Structural Classification of Proteins
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Fold: Pentein, beta/alpha-propeller

duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Pentein, beta/alpha-propeller [55908]
    duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis

Superfamilies:

  1. Pentein [55909] (7)
    link to SUPERFAMILY database - Superfamily
    1. Ribosome anti-association factor eIF6 (aIF6) [55910] (2)
      1. Ribosome anti-association factor eIF6 (aIF6) [55911]
        1. Archaeon Methanococcus jannaschii [TaxId: 2190] [55912] (1)
          1. 1g61 picpic
            1. chain a [41126] picpiclink
            2. chain b [41127] picpiclink
        2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55913] (1)
          1. 1g62 picpic
            mutant
            1. chain a [41128] picpiclink
    2. Amidinotransferase [55914] (2)
      common fold is elaborated with many active site-forming insertions
      1. L-arginine: glycine amidinotransferase [55915]
        1. Human (Homo sapiens) [TaxId: 9606] [55916] (11)
          1. 1jdw picpic
            complexed with bme
            1. chain a [41129] picpiclink
          2. 2jdw picpic
            1. chain a [41130] picpiclink
          3. 7jdw picpic
            complexed with dav
            1. chain a [41131] picpiclink
          4. 8jdw picpic
            complexed with aln
            1. chain a [41132] picpiclink
          5. 1jdx picpic
            complexed with nor
            1. chain a [41133] picpiclink
          6. 5jdw picpic
            complexed with glc
            1. chain a [41134] picpiclink
          7. 3jdw picpic
            complexed with orn
            1. chain a [41136] picpiclink
          8. 6jdw picpic
            complexed with gab
            1. chain a [41135] picpiclink
          9. 9jdw picpic
            complexed with aba
            1. chain a [41138] picpiclink
          10. 4jdw picpic
            mutant
            1. chain a [41137] picpiclink
          11. 2jdx picpic
            mutant
            1. chain a [41139] picpiclink
      2. L-arginine: inosamine-phosphate amidinotransferase [55917]
        1. Streptomyces griseus [TaxId: 1911] [55918] (1)
          1. 1bwd picpic
            1. chain a [41140] picpiclink
            2. chain b [41141] picpiclink
    3. Dimethylarginine dimethylaminohydrolase DDAH [64380] (1)
      functionally related to the amidinotransferase, similar active sites
      1. Dimethylarginine dimethylaminohydrolase DDAH [64381]
        1. Pseudomonas aeruginosa [TaxId: 287] [64382] (1)
          1. 1h70 picpic
            complexed with cir; mutant
            1. chain a [60711] picpiclink
    4. Arginine deiminase [103232] (2)
      functionally related to the amidinotransferase, similar active sites
      1. Arginine deiminase [103233]
        1. Pseudomonas aeruginosa [TaxId: 287] [103234] (17)
          1. 2a9g picpic
            complexed with arg; mutant
            1. region a:6-417 [126435] picpiclink
          2. 2aaf picpic
            complexed with cyr; mutant
            1. region a:6-417 [126471] picpiclink
          3. 2a9g picpic
            automatically matched to 2A9G A:6-417
            complexed with arg; mutant
            1. region b:6-416 [126436] picpiclink
          4. 2a9g picpic
            automatically matched to 2A9G A:6-417
            complexed with arg; mutant
            1. region c:6-417 [126437] picpiclink
          5. 2a9g picpic
            automatically matched to 2A9G A:6-417
            complexed with arg; mutant
            1. region d:6-417 [126438] picpiclink
          6. 2aaf picpic
            automatically matched to 2AAF A:6-417
            complexed with cyr; mutant
            1. region b:6-417 [126472] picpiclink
          7. 2aaf picpic
            automatically matched to 2AAF A:6-417
            complexed with cyr; mutant
            1. region c:7-417 [126473] picpiclink
          8. 2aaf picpic
            automatically matched to 2AAF A:6-417
            complexed with cyr; mutant
            1. region d:6-417 [126474] picpiclink
          9. 1rxx picpic
            1. chain a [98061] picpiclink
            2. chain b [98062] picpiclink
            3. chain c [98063] picpiclink
            4. chain d [98064] picpiclink
          10. 2aci picpic
            mutant
            1. region a:6-417 [126551] picpiclink
          11. 2aci picpic
            automatically matched to 2ACI A:6-417
            mutant
            1. region b:6-417 [126552] picpiclink
          12. 2aci picpic
            automatically matched to 2ACI A:6-417
            mutant
            1. region c:7-417 [126553] picpiclink
          13. 2aci picpic
            automatically matched to 2ACI A:6-417
            mutant
            1. region d:6-417 [126554] picpiclink
          14. 2abr picpic
            complexed with cyr; mutant
            1. region a:6-417 [126530] picpiclink
          15. 2abr picpic
            automatically matched to 2ABR A:6-417
            complexed with cyr; mutant
            1. region b:6-417 [126531] picpiclink
          16. 2abr picpic
            automatically matched to 2ABR A:6-417
            complexed with cyr; mutant
            1. region c:7-417 [126532] picpiclink
          17. 2abr picpic
            automatically matched to 2ABR A:6-417
            complexed with cyr; mutant
            1. region d:6-416 [126533] picpiclink
        2. Mycoplasma arginini [TaxId: 2094] [103235] (2)
          1. 1s9r picpic
            complexed with arg, trs, unx
            1. chain a [98758] picpiclink
            2. chain b [98759] picpiclink
          2. 1lxy picpic
            complexed with cir, trs
            1. chain a [91154] picpiclink
            2. chain b [91155] picpiclink
    5. Peptidylarginine deiminase Pad4, catalytic C-terminal domain [111152] (1)
      # functionally related to the amidinotransferase, similar active sites
      1. Peptidylarginine deiminase Pad4, catalytic C-terminal domain [111153]
        1. Human (Homo sapiens) [TaxId: 9606] [111154] (7)
          SQ Q9UM07
          1. 2dex picpicxrefxref
            automatically matched to d1wd8a3
            complexed with ca, so4; mutant
            1. region x:294-663 [131438] picpiclink
          2. 2dew picpicxrefxref
            automatically matched to d1wd8a3
            complexed with ca, so4; mutant
            1. region x:294-663 [131435] picpiclink
          3. 2dey picpicxrefxref
            automatically matched to d1wd8a3
            complexed with ace, ca, so4; mutant
            1. region x:294-663 [131441] picpiclink
          4. 2dw5 picpicxrefxref
            automatically matched to d1wd8a3
            complexed with bfb, ca, so4
            1. region a:294-663 [131807] picpiclink
          5. 1wda picpicxrefxref
            complexed with bag, ca, so4; mutant
            1. region a:294-663 [109245] picpiclink
          6. 1wd9 picpicxrefxref
            complexed with ca, so4; mutant
            1. region a:294-663 [109242] picpiclink
          7. 1wd8 picpicxrefxref
            1. region a:294-663 [109239] picpiclink
    6. Porphyromonas-type peptidylarginine deiminase [111155] (6)
      Pfam 04371; functionally related to the amidinotransferase, similar active site
      1. Agmatine iminohydrolase [111156]
        1. Thale-cress (Arabidopsis thaliana) [TaxId: 3702] [111157] (3)
          SQ Q8GWW7
          1. 1vkp picpic
            Structural genomics target
            complexed with edo, mg, mpo
            1. chain a [108686] picpiclink
            2. chain b [108687] picpiclink
          2. 2q3u picpic
            automatically matched to d1vkpa_
            complexed with edo, mg, mpo
            1. region a:5-376 [139809] picpiclink
          3. 2q3u picpic
            automatically matched to d1vkpa_
            complexed with edo, mg, mpo
            1. region b:7-376 [139810] picpiclink
        2. Streptococcus mutans [TaxId: 1309] [143807] (12)
          SQ Q8DW17 2-370
          1. 2ewo picpic
            1. region a:2-370 [132476] picpiclink
          2. 2ewo picpic
            automatically matched to 2EWO A:2-370
            1. region b:2-370 [132477] picpiclink
          3. 2ewo picpic
            automatically matched to 2EWO A:2-370
            1. region c:2-370 [132478] picpiclink
          4. 2ewo picpic
            automatically matched to 2EWO A:2-370
            1. region d:2-370 [132479] picpiclink
          5. 2ewo picpic
            automatically matched to 2EWO A:2-370
            1. region e:2-370 [132480] picpiclink
          6. 2ewo picpic
            automatically matched to 2EWO A:2-370
            1. region f:2-370 [132481] picpiclink
          7. 2ewo picpic
            automatically matched to 2EWO A:2-370
            1. region g:2-370 [132482] picpiclink
          8. 2ewo picpic
            automatically matched to 2EWO A:2-370
            1. region h:2-370 [132483] picpiclink
          9. 2ewo picpic
            automatically matched to 2EWO A:2-370
            1. region i:2-370 [132484] picpiclink
          10. 2ewo picpic
            automatically matched to 2EWO A:2-370
            1. region j:2-370 [132485] picpiclink
          11. 2ewo picpic
            automatically matched to 2EWO A:2-370
            1. region k:2-370 [132486] picpiclink
          12. 2ewo picpic
            automatically matched to 2EWO A:2-370
            1. region l:2-370 [132487] picpiclink
        3. Enterococcus faecalis [TaxId: 1351] [160717] (6)
          SQ Q837U5 2-365
          1. 2jer picpic
            complexed with agt, arg, gln, glu, gly, ile, lys, pro, thr, val
            1. region a:2-365 [148019] picpiclink
          2. 2jer picpic
            automatically matched to 2JER A:2-365
            complexed with agt, arg, gln, glu, gly, ile, lys, pro, thr, val
            1. region b:2-365 [148020] picpiclink
          3. 2jer picpic
            automatically matched to 2JER A:2-365
            complexed with agt, arg, gln, glu, gly, ile, lys, pro, thr, val
            1. region c:2-365 [148021] picpiclink
          4. 2jer picpic
            automatically matched to 2JER A:2-365
            complexed with agt, arg, gln, glu, gly, ile, lys, pro, thr, val
            1. region d:2-365 [148022] picpiclink
          5. 2jer picpic
            automatically matched to 2JER A:2-365
            complexed with agt, arg, gln, glu, gly, ile, lys, pro, thr, val
            1. region e:2-365 [148023] picpiclink
          6. 2jer picpic
            automatically matched to 2JER A:2-365
            complexed with agt, arg, gln, glu, gly, ile, lys, pro, thr, val
            1. region f:2-365 [148024] picpiclink
      2. Putative peptidyl-arginine deiminase [111158]
        1. Helicobacter pylori J99 [TaxId: 85963] [111159] (1)
          SQ Q9ZN18
          1. 2cmu picpic
            1. region a:3-332 [146414] picpiclink
        2. Chlorobium tepidum [TaxId: 1097] [118089] (1)
          SQ Q8KCB6
          1. 1xkn picpic
            Structural genomics target
            complexed with cl, na
            1. chain a [115414] picpiclink
        3. Porphyromonas gingivalis [TaxId: 837] [143808] (2)
          SQ Q7MXM8 3-341
          1. 1zbr picpic
            1. region a:3-341 [124868] picpiclink
          2. 1zbr picpic
            automatically matched to 1ZBR A:3-341
            1. region b:3-341 [124869] picpiclink
    7. Succinylarginine dihydrolase-like [143809] (1)
      Pfam 04996
      1. Succinylarginine dihydrolase [143810]
        1. Escherichia coli [TaxId: 562] [143811] (14)
          SQ P76216 2-441
          1. 1ynh picpic
            automatically matched to 1YNF A:2-441
            complexed with k, suo
            1. region a:3-441 [123729] picpiclink
          2. 1ynh picpic
            automatically matched to 1YNF A:2-441
            complexed with k, suo
            1. region b:2-441 [123730] picpiclink
          3. 1ynh picpic
            automatically matched to 1YNF A:2-441
            complexed with k, suo
            1. region c:3-441 [123731] picpiclink
          4. 1ynh picpic
            automatically matched to 1YNF A:2-441
            complexed with k, suo
            1. region d:3-441 [123732] picpiclink
          5. 1ynf picpic
            complexed with k
            1. region a:2-441 [123723] picpiclink
          6. 1ynf picpic
            automatically matched to 1YNF A:2-441
            complexed with k
            1. region b:2-441 [123724] picpiclink
          7. 1ynf picpic
            automatically matched to 1YNF A:2-441
            complexed with k
            1. region c:2-441 [123725] picpiclink
          8. 1ynf picpic
            automatically matched to 1YNF A:2-441
            complexed with k
            1. region d:2-441 [123726] picpiclink
          9. 1ynf picpic
            automatically matched to 1YNF A:2-441
            complexed with k
            1. region e:2-441 [123727] picpiclink
          10. 1ynf picpic
            automatically matched to 1YNF A:2-441
            complexed with k
            1. region f:2-441 [123728] picpiclink
          11. 1yni picpic
            complexed with k, sug; mutant
            1. region a:2-441 [123733] picpiclink
          12. 1yni picpic
            automatically matched to 1YNI A:2-441
            complexed with k, sug; mutant
            1. region b:2-441 [123734] picpiclink
          13. 1yni picpic
            automatically matched to 1YNI A:2-441
            complexed with k, sug; mutant
            1. region c:2-441 [123735] picpiclink
          14. 1yni picpic
            automatically matched to 1YNI A:2-441
            complexed with k, sug; mutant
            1. region d:2-441 [123736] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk