Structural Classification of Proteins
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Superfamily: Pentein

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Pentein, beta/alpha-propeller [55908]
    duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis
  4. Superfamily: Pentein [55909]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Ribosome anti-association factor eIF6 (aIF6) [55910] (2)
    1. Ribosome anti-association factor eIF6 (aIF6) [55911]
      1. Archaeon Methanococcus jannaschii [TaxId: 2190] [55912] (1)
        1. 1g61 picpic
          1. chain a [41126] picpiclink
          2. chain b [41127] picpiclink
      2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55913] (1)
        1. 1g62 picpic
          mutant
          1. chain a [41128] picpiclink
  2. Amidinotransferase [55914] (2)
    common fold is elaborated with many active site-forming insertions
    1. L-arginine: glycine amidinotransferase [55915]
      1. Human (Homo sapiens) [TaxId: 9606] [55916] (11)
        1. 1jdw picpic
          complexed with bme
          1. chain a [41129] picpiclink
        2. 2jdw picpic
          1. chain a [41130] picpiclink
        3. 7jdw picpic
          complexed with dav
          1. chain a [41131] picpiclink
        4. 8jdw picpic
          complexed with aln
          1. chain a [41132] picpiclink
        5. 1jdx picpic
          complexed with nor
          1. chain a [41133] picpiclink
        6. 5jdw picpic
          complexed with glc
          1. chain a [41134] picpiclink
        7. 3jdw picpic
          complexed with orn
          1. chain a [41136] picpiclink
        8. 6jdw picpic
          complexed with gab
          1. chain a [41135] picpiclink
        9. 9jdw picpic
          complexed with aba
          1. chain a [41138] picpiclink
        10. 4jdw picpic
          mutant
          1. chain a [41137] picpiclink
        11. 2jdx picpic
          mutant
          1. chain a [41139] picpiclink
    2. L-arginine: inosamine-phosphate amidinotransferase [55917]
      1. Streptomyces griseus [TaxId: 1911] [55918] (1)
        1. 1bwd picpic
          1. chain a [41140] picpiclink
          2. chain b [41141] picpiclink
  3. Dimethylarginine dimethylaminohydrolase DDAH [64380] (1)
    functionally related to the amidinotransferase, similar active sites
    1. Dimethylarginine dimethylaminohydrolase DDAH [64381]
      1. Pseudomonas aeruginosa [TaxId: 287] [64382] (1)
        1. 1h70 picpic
          complexed with cir; mutant
          1. chain a [60711] picpiclink
  4. Arginine deiminase [103232] (2)
    functionally related to the amidinotransferase, similar active sites
    1. Arginine deiminase [103233]
      1. Pseudomonas aeruginosa [TaxId: 287] [103234] (17)
        1. 2a9g picpic
          complexed with arg; mutant
          1. region a:6-417 [126435] picpiclink
        2. 2aaf picpic
          complexed with cyr; mutant
          1. region a:6-417 [126471] picpiclink
        3. 2a9g picpic
          automatically matched to 2A9G A:6-417
          complexed with arg; mutant
          1. region b:6-416 [126436] picpiclink
        4. 2a9g picpic
          automatically matched to 2A9G A:6-417
          complexed with arg; mutant
          1. region c:6-417 [126437] picpiclink
        5. 2a9g picpic
          automatically matched to 2A9G A:6-417
          complexed with arg; mutant
          1. region d:6-417 [126438] picpiclink
        6. 2aaf picpic
          automatically matched to 2AAF A:6-417
          complexed with cyr; mutant
          1. region b:6-417 [126472] picpiclink
        7. 2aaf picpic
          automatically matched to 2AAF A:6-417
          complexed with cyr; mutant
          1. region c:7-417 [126473] picpiclink
        8. 2aaf picpic
          automatically matched to 2AAF A:6-417
          complexed with cyr; mutant
          1. region d:6-417 [126474] picpiclink
        9. 1rxx picpic
          1. chain a [98061] picpiclink
          2. chain b [98062] picpiclink
          3. chain c [98063] picpiclink
          4. chain d [98064] picpiclink
        10. 2aci picpic
          mutant
          1. region a:6-417 [126551] picpiclink
        11. 2aci picpic
          automatically matched to 2ACI A:6-417
          mutant
          1. region b:6-417 [126552] picpiclink
        12. 2aci picpic
          automatically matched to 2ACI A:6-417
          mutant
          1. region c:7-417 [126553] picpiclink
        13. 2aci picpic
          automatically matched to 2ACI A:6-417
          mutant
          1. region d:6-417 [126554] picpiclink
        14. 2abr picpic
          complexed with cyr; mutant
          1. region a:6-417 [126530] picpiclink
        15. 2abr picpic
          automatically matched to 2ABR A:6-417
          complexed with cyr; mutant
          1. region b:6-417 [126531] picpiclink
        16. 2abr picpic
          automatically matched to 2ABR A:6-417
          complexed with cyr; mutant
          1. region c:7-417 [126532] picpiclink
        17. 2abr picpic
          automatically matched to 2ABR A:6-417
          complexed with cyr; mutant
          1. region d:6-416 [126533] picpiclink
      2. Mycoplasma arginini [TaxId: 2094] [103235] (2)
        1. 1s9r picpic
          complexed with arg, trs, unx
          1. chain a [98758] picpiclink
          2. chain b [98759] picpiclink
        2. 1lxy picpic
          complexed with cir, trs
          1. chain a [91154] picpiclink
          2. chain b [91155] picpiclink
  5. Peptidylarginine deiminase Pad4, catalytic C-terminal domain [111152] (1)
    # functionally related to the amidinotransferase, similar active sites
    1. Peptidylarginine deiminase Pad4, catalytic C-terminal domain [111153]
      1. Human (Homo sapiens) [TaxId: 9606] [111154] (7)
        SQ Q9UM07
        1. 2dex picpicxrefxref
          automatically matched to d1wd8a3
          complexed with ca, so4; mutant
          1. region x:294-663 [131438] picpiclink
        2. 2dew picpicxrefxref
          automatically matched to d1wd8a3
          complexed with ca, so4; mutant
          1. region x:294-663 [131435] picpiclink
        3. 2dey picpicxrefxref
          automatically matched to d1wd8a3
          complexed with ace, ca, so4; mutant
          1. region x:294-663 [131441] picpiclink
        4. 2dw5 picpicxrefxref
          automatically matched to d1wd8a3
          complexed with bfb, ca, so4
          1. region a:294-663 [131807] picpiclink
        5. 1wda picpicxrefxref
          complexed with bag, ca, so4; mutant
          1. region a:294-663 [109245] picpiclink
        6. 1wd9 picpicxrefxref
          complexed with ca, so4; mutant
          1. region a:294-663 [109242] picpiclink
        7. 1wd8 picpicxrefxref
          1. region a:294-663 [109239] picpiclink
  6. Porphyromonas-type peptidylarginine deiminase [111155] (6)
    Pfam 04371; functionally related to the amidinotransferase, similar active site
    1. Agmatine iminohydrolase [111156]
      1. Thale-cress (Arabidopsis thaliana) [TaxId: 3702] [111157] (3)
        SQ Q8GWW7
        1. 1vkp picpic
          Structural genomics target
          complexed with edo, mg, mpo
          1. chain a [108686] picpiclink
          2. chain b [108687] picpiclink
        2. 2q3u picpic
          automatically matched to d1vkpa_
          complexed with edo, mg, mpo
          1. region a:5-376 [139809] picpiclink
        3. 2q3u picpic
          automatically matched to d1vkpa_
          complexed with edo, mg, mpo
          1. region b:7-376 [139810] picpiclink
      2. Streptococcus mutans [TaxId: 1309] [143807] (12)
        SQ Q8DW17 2-370
        1. 2ewo picpic
          1. region a:2-370 [132476] picpiclink
        2. 2ewo picpic
          automatically matched to 2EWO A:2-370
          1. region b:2-370 [132477] picpiclink
        3. 2ewo picpic
          automatically matched to 2EWO A:2-370
          1. region c:2-370 [132478] picpiclink
        4. 2ewo picpic
          automatically matched to 2EWO A:2-370
          1. region d:2-370 [132479] picpiclink
        5. 2ewo picpic
          automatically matched to 2EWO A:2-370
          1. region e:2-370 [132480] picpiclink
        6. 2ewo picpic
          automatically matched to 2EWO A:2-370
          1. region f:2-370 [132481] picpiclink
        7. 2ewo picpic
          automatically matched to 2EWO A:2-370
          1. region g:2-370 [132482] picpiclink
        8. 2ewo picpic
          automatically matched to 2EWO A:2-370
          1. region h:2-370 [132483] picpiclink
        9. 2ewo picpic
          automatically matched to 2EWO A:2-370
          1. region i:2-370 [132484] picpiclink
        10. 2ewo picpic
          automatically matched to 2EWO A:2-370
          1. region j:2-370 [132485] picpiclink
        11. 2ewo picpic
          automatically matched to 2EWO A:2-370
          1. region k:2-370 [132486] picpiclink
        12. 2ewo picpic
          automatically matched to 2EWO A:2-370
          1. region l:2-370 [132487] picpiclink
      3. Enterococcus faecalis [TaxId: 1351] [160717] (6)
        SQ Q837U5 2-365
        1. 2jer picpic
          complexed with agt, arg, gln, glu, gly, ile, lys, pro, thr, val
          1. region a:2-365 [148019] picpiclink
        2. 2jer picpic
          automatically matched to 2JER A:2-365
          complexed with agt, arg, gln, glu, gly, ile, lys, pro, thr, val
          1. region b:2-365 [148020] picpiclink
        3. 2jer picpic
          automatically matched to 2JER A:2-365
          complexed with agt, arg, gln, glu, gly, ile, lys, pro, thr, val
          1. region c:2-365 [148021] picpiclink
        4. 2jer picpic
          automatically matched to 2JER A:2-365
          complexed with agt, arg, gln, glu, gly, ile, lys, pro, thr, val
          1. region d:2-365 [148022] picpiclink
        5. 2jer picpic
          automatically matched to 2JER A:2-365
          complexed with agt, arg, gln, glu, gly, ile, lys, pro, thr, val
          1. region e:2-365 [148023] picpiclink
        6. 2jer picpic
          automatically matched to 2JER A:2-365
          complexed with agt, arg, gln, glu, gly, ile, lys, pro, thr, val
          1. region f:2-365 [148024] picpiclink
    2. Putative peptidyl-arginine deiminase [111158]
      1. Helicobacter pylori J99 [TaxId: 85963] [111159] (1)
        SQ Q9ZN18
        1. 2cmu picpic
          1. region a:3-332 [146414] picpiclink
      2. Chlorobium tepidum [TaxId: 1097] [118089] (1)
        SQ Q8KCB6
        1. 1xkn picpic
          Structural genomics target
          complexed with cl, na
          1. chain a [115414] picpiclink
      3. Porphyromonas gingivalis [TaxId: 837] [143808] (2)
        SQ Q7MXM8 3-341
        1. 1zbr picpic
          1. region a:3-341 [124868] picpiclink
        2. 1zbr picpic
          automatically matched to 1ZBR A:3-341
          1. region b:3-341 [124869] picpiclink
  7. Succinylarginine dihydrolase-like [143809] (1)
    Pfam 04996
    1. Succinylarginine dihydrolase [143810]
      1. Escherichia coli [TaxId: 562] [143811] (14)
        SQ P76216 2-441
        1. 1ynh picpic
          automatically matched to 1YNF A:2-441
          complexed with k, suo
          1. region a:3-441 [123729] picpiclink
        2. 1ynh picpic
          automatically matched to 1YNF A:2-441
          complexed with k, suo
          1. region b:2-441 [123730] picpiclink
        3. 1ynh picpic
          automatically matched to 1YNF A:2-441
          complexed with k, suo
          1. region c:3-441 [123731] picpiclink
        4. 1ynh picpic
          automatically matched to 1YNF A:2-441
          complexed with k, suo
          1. region d:3-441 [123732] picpiclink
        5. 1ynf picpic
          complexed with k
          1. region a:2-441 [123723] picpiclink
        6. 1ynf picpic
          automatically matched to 1YNF A:2-441
          complexed with k
          1. region b:2-441 [123724] picpiclink
        7. 1ynf picpic
          automatically matched to 1YNF A:2-441
          complexed with k
          1. region c:2-441 [123725] picpiclink
        8. 1ynf picpic
          automatically matched to 1YNF A:2-441
          complexed with k
          1. region d:2-441 [123726] picpiclink
        9. 1ynf picpic
          automatically matched to 1YNF A:2-441
          complexed with k
          1. region e:2-441 [123727] picpiclink
        10. 1ynf picpic
          automatically matched to 1YNF A:2-441
          complexed with k
          1. region f:2-441 [123728] picpiclink
        11. 1yni picpic
          complexed with k, sug; mutant
          1. region a:2-441 [123733] picpiclink
        12. 1yni picpic
          automatically matched to 1YNI A:2-441
          complexed with k, sug; mutant
          1. region b:2-441 [123734] picpiclink
        13. 1yni picpic
          automatically matched to 1YNI A:2-441
          complexed with k, sug; mutant
          1. region c:2-441 [123735] picpiclink
        14. 1yni picpic
          automatically matched to 1YNI A:2-441
          complexed with k, sug; mutant
          1. region d:2-441 [123736] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk