Structural Classification of Proteins
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Superfamily: Pentein

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Pentein, beta/alpha-propeller [55908]
    duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis
  4. Superfamily: Pentein [55909]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Ribosome anti-association factor eIF6 (aIF6) [55910] (2)
    1. Ribosome anti-association factor eIF6 (aIF6) [55911]
      1. Archaeon Methanococcus jannaschii [TaxId: 2190] [55912] (1) picpic
      2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55913] (1) picpic
  2. Amidinotransferase [55914] (2)
    common fold is elaborated with many active site-forming insertions
    1. L-arginine: glycine amidinotransferase [55915]
      1. Human (Homo sapiens) [TaxId: 9606] [55916] (11) picpic
    2. L-arginine: inosamine-phosphate amidinotransferase [55917]
      1. Streptomyces griseus [TaxId: 1911] [55918] (1) picpic
  3. Dimethylarginine dimethylaminohydrolase DDAH [64380] (1)
    functionally related to the amidinotransferase, similar active sites
    1. Dimethylarginine dimethylaminohydrolase DDAH [64381]
      1. Pseudomonas aeruginosa [TaxId: 287] [64382] (1) picpic
  4. Arginine deiminase [103232] (2)
    functionally related to the amidinotransferase, similar active sites
    1. Arginine deiminase [103233]
      1. Pseudomonas aeruginosa [TaxId: 287] [103234] (17) picpic
      2. Mycoplasma arginini [TaxId: 2094] [103235] (2) picpic
  5. Peptidylarginine deiminase Pad4, catalytic C-terminal domain [111152] (1)
    # functionally related to the amidinotransferase, similar active sites
    1. Peptidylarginine deiminase Pad4, catalytic C-terminal domain [111153]
      1. Human (Homo sapiens) [TaxId: 9606] [111154] (7) picpic
        SQ Q9UM07
  6. Porphyromonas-type peptidylarginine deiminase [111155] (6)
    Pfam 04371; functionally related to the amidinotransferase, similar active site
    1. Agmatine iminohydrolase [111156]
      1. Thale-cress (Arabidopsis thaliana) [TaxId: 3702] [111157] (3) picpic
        SQ Q8GWW7
      2. Streptococcus mutans [TaxId: 1309] [143807] (12) picpic
        SQ Q8DW17 2-370
      3. Enterococcus faecalis [TaxId: 1351] [160717] (6) picpic
        SQ Q837U5 2-365
    2. Putative peptidyl-arginine deiminase [111158]
      1. Helicobacter pylori J99 [TaxId: 85963] [111159] (1) picpic
        SQ Q9ZN18
      2. Chlorobium tepidum [TaxId: 1097] [118089] (1) picpic
        SQ Q8KCB6
      3. Porphyromonas gingivalis [TaxId: 837] [143808] (2) picpic
        SQ Q7MXM8 3-341
  7. Succinylarginine dihydrolase-like [143809] (1)
    Pfam 04996
    1. Succinylarginine dihydrolase [143810]
      1. Escherichia coli [TaxId: 562] [143811] (14) picpic
        SQ P76216 2-441
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk