Structural Classification of Proteins
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Fold: TBP-like

beta-alpha-beta(4)-alpha

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: TBP-like [55944]
    beta-alpha-beta(4)-alpha

Superfamilies:

  1. TATA-box binding protein-like [55945] (2)
    link to SUPERFAMILY database - Superfamily
    1. TATA-box binding protein (TBP), C-terminal domain [55946] (5)
      duplication: consists of two clear structural repeats
      1. TATA-box binding protein (TBP), C-terminal domain [55947]
        structure of the N-terminal domain is not known yet
        1. Human (Homo sapiens) [TaxId: 9606] [55948] (5) picpic
        2. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [55949] (13) picpic
        3. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55950] (8) picpic
        4. Archaeon Pyrococcus woesei [TaxId: 2262] [55951] (3) picpic
        5. Archaeon Sulfolobus acidocaldarius [TaxId: 2285] [103238] (1) picpic
    2. DNA repair glycosylase, N-terminal domain [55952] (2)
      contains a single copy of this fold
      1. 3-Methyladenine DNA glycosylase II (gene alkA or aidA) [55953]
        1. Escherichia coli [TaxId: 562] [55954] (35) picpic
          SQ P04395
      2. 8-oxoguanine glycosylase [55955]
        1. Human (Homo sapiens) [TaxId: 9606] [55956] (23) picpic
  2. MoaD-related protein, C-terminal domain [103239] (1)
    contains a single copy of this fold
    link to SUPERFAMILY database - Superfamily
    1. MoaD-related protein, C-terminal domain [103240] (1)
      1. MoaD-related protein, C-terminal domain [103241]
        1. Thermus thermophilus [TaxId: 274] [103242] (1) picpic
  3. KA1-like [103243] (2)
    contains a single copy of this fold
    link to SUPERFAMILY database - Superfamily
    1. Kinase associated domain 1, KA1 [103244] (1)
      Pfam 02149
      1. Map/microtubule affinity-regulating kinase 3 [103245]
        1. Mouse (Mus musculus) [TaxId: 10090] [103246] (2) picpic
          SQ Q8C6G9 373-452
    2. Ssp2 C-terminal domain-like [160723] (3)
      PfamB 166430
      1. Carbon catabolite-derepressing protein kinase SNF1 [160724]
        1. Saccharomyces cerevisiae [TaxId: 4932] [160725] (2) picpic
          SQ P06782 460-630
      2. Snf1-like protein kinase ssp2 [160726]
        1. Schizosaccharomyces pombe [TaxId: 4896] [160727] (12) picpic
          SQ O74536 449-576
      3. 5'-AMP-activated protein kinase catalytic subunit alpha-1, AMPK1 [160728]
        1. Rat (Rattus norvegicus) [TaxId: 10116] [160729] (3) picpic
          SQ P54645 396-548
  4. TT1751-like [103247] (1)
    contains a single copy of this fold decorated with additional structures; forms dimer
    link to SUPERFAMILY database - Superfamily
    1. TT1751-like [103248] (2)
      Pfam 03625; DUF302
      1. Unnamed hypothetical protein [103249]
        1. Bacillus stearothermophilus [TaxId: 1422] [103250] (1) picpic
      2. Hypothetical protein TT1751 (TTHA1732) [111164]
        1. Thermus thermophilus HB8 [TaxId: 300852] [111165] (1) picpic
          SQ Q84BQ8
  5. Cell-division protein ZipA, C-terminal domain [64383] (1)
    contains a single copy of this fold
    link to SUPERFAMILY database - Superfamily
    1. Cell-division protein ZipA, C-terminal domain [64384] (1)
      1. Cell-division protein ZipA, C-terminal domain [64385]
        1. Escherichia coli [TaxId: 562] [64386] (10) picpic
  6. Phosphoglucomutase, C-terminal domain [55957] (1)
    contains a single copy of this fold and an extra beta-strand at the C-terminus
    link to SUPERFAMILY database - Superfamily
    1. Phosphoglucomutase, C-terminal domain [55958] (4)
      Pfam 00408
      1. Phosphoglucomutase [55959]
        1. Rabbit (Oryctolagus cuniculus) [TaxId: 9986] [55960] (6) picpic
      2. Exocytosis-sensitive phosphoprotein, pp63/parafusin [69811]
        1. Paramecium tetraurelia [TaxId: 5888] [69812] (2) picpic
      3. Phosphomannomutase/phosphoglucomutase [81375]
        1. Pseudomonas aeruginosa [TaxId: 287] [81374] (12) picpic
      4. Phosphoacetylglucosamine mutase [118093]
        1. Mouse (Mus musculus) [TaxId: 10090] [118094] (1) picpic
          SQ Q9CYR6 442-540
  7. Bet v1-like [55961] (10)
    contains a single copy of this fold with a alpha-beta2 insertion after the first helix; there is a cavity between the beta-sheet and the long C-terminal helix
    link to SUPERFAMILY database - Superfamily
    1. Pathogenesis-related protein 10 (PR10)-like [55962] (8)
      1. Major tree pollen allergen [55963]
        1. White birch (Betula verrucosa), Bet v 1 [TaxId: 3505] [55964] (5) picpic
        2. European white birch (Betula pendula), Bet v I-a [TaxId: 3505] [55965] (1) picpic
        3. European white birch (Betula pendula), Bet v 1-l [TaxId: 3505] [82782] (1) picpic
        4. Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229] [64387] (2) picpic
      2. Plant pathogenesis-related protein PR10 [75543]
        1. Yellow lupine (Lupinus luteus) [TaxId: 3873] [75544] (4) picpic
        2. Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171] [143818] (4) picpic
          SQ Q6T6J0 2-148
      3. Hypothetical protein At1G24000 [103251]
        1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [103252] (3) picpic
      4. Major allergen api g 1 [143819]
        1. Celery (Apium graveolens) [TaxId: 4045] [143820] (2) picpic
          SQ P49372 2-154
    2. STAR domain [55966] (4)
      1. Lipid transport domain of Mln64 [55967]
        1. Human (Homo sapiens) [TaxId: 9606] [55968] (1) picpic
      2. Cholesterol-regulated Start protein 4 (Stard4). [75545]
        1. Mouse (Mus musculus) [TaxId: 10090] [75546] (1) picpic
      3. Phosphatidylcholine transfer protein [75547]
        1. Human (Homo sapiens) [TaxId: 9606] [75548] (3) picpic
      4. Star-related lipid transfer protein 13 [160730]
        1. Human (Homo sapiens) [TaxId: 9606] [160731] (3) picpic
          SQ Q9Y3M8 908-1104
    3. Phoshatidylinositol transfer protein, PITP [64388] (4)
      1. Phoshatidylinositol transfer protein, PITP [64389]
        1. Rat (Rattus norvegicus) [TaxId: 10116] [64390] (1) picpic
        2. Mouse (Mus musculus) [TaxId: 10090] [75549] (1) picpic
        3. Human (Homo sapiens) [TaxId: 9606] [103253] (1) picpic
        4. Rat (Rattus norvegicus), beta isoform [TaxId: 10116] [143821] (1) picpic
          SQ P53812 1-270
    4. Ring hydroxylating alpha subunit catalytic domain [55969] (7)
      Pfam 00848; contains a few insertion and C-terminal extension compared with Bet v1
      1. Naphthalene 1,2-dioxygenase alpha subunit, C-domain [55970]
        1. Pseudomonas putida [TaxId: 303] [55971] (16) picpic
        2. Rhodococcus sp. ncimb12038 [TaxId: 92694] [143822] (6) picpic
          SQ Q9X3R9 163-441
      2. Biphenyl dioxygenase large subunit BphA1, C-terminal domain [111166]
        1. Rhodococcus sp. (strain RHA1) [TaxId: 101510] [111167] (2) picpic
          SQ Q53122 17-451
      3. 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO [143823]
        1. Pseudomonas putida [TaxId: 303] [143824] (1) picpic
          SQ O05935 164-442
      4. Large subunit of cumene dioxygenase cumA1 [143825]
        1. Pseudomonas fluorescens [TaxId: 294] [143826] (1) picpic
          SQ Q51743 181-459
      5. Terminal oxygenase component of carbazole CarAa [143827]
        1. Janthinobacterium sp. j3 [TaxId: 213804] [143828] (10) picpic
          SQ Q84II6 143-384
      6. Nitrobenzene dioxygenase alpha subunit, NBDO-alpha [143829]
        1. Comamonas sp. JS765 [TaxId: 58226] [143830] (3) picpic
          SQ Q8RTL4 153-439
    5. AHSA1 domain [111168] (11)
      Pfam 05146
      1. Hypothetical protein NE0264 [111169]
        1. Nitrosomonas europaea [TaxId: 915] [111170] (1) picpic
          SQ Q82XK1
      2. Hypothetical protein MM0500 [118095]
        1. Methanosarcina mazei [TaxId: 2209] [118096] (1) picpic
          SQ Q8PZJ2
      3. Hypothetical protein BH1534 [118097]
        1. Bacillus halodurans [TaxId: 86665] [118098] (1) picpic
          SQ Q9KCN5
      4. Hypothetical protein BC4709 [118099]
        1. Bacillus cereus [TaxId: 1396] [118100] (1) picpic
          SQ Q816V6
      5. Calicheamicin gene cluster protein CalC [143831]
        possible link between the AHSA1 (Pfam 08327) and oligoketide cyclase/dehydrase-like (new Pfam 03364) families
        1. Micromonospora echinospora [TaxId: 1877] [143832] (3) picpic
          SQ Q8KNF0 27-181
      6. Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 [143833]
        1. Human (Homo sapiens) [TaxId: 9606] [143834] (1) picpic
          SQ O95433 204-335
      7. Hypothetical protein CV1439 [143835]
        1. Chromobacterium violaceum [TaxId: 536] [143836] (6) picpic
          SQ Q7NY36 2-144
      8. Hypothetical protein EF2215 [160732]
        1. Enterococcus faecalis [TaxId: 1351] [160733] (1) picpic
          SQ Q832L1 1-160
      9. Uncharacterized protein SPO3351 [160734]
        1. Silicibacter pomeroyi [TaxId: 89184] [160735] (1) picpic
          SQ Q5LN61 2-144
      10. Hypothetical protein SA2116 [160736]
        1. Staphylococcus aureus [TaxId: 1280] [160737] (1) picpic
          SQ Q2FEH1 5-168
      11. Uncharacterized protein BPP1335 [160738]
        1. Bordetella parapertussis [TaxId: 519] [160739] (1) picpic
          SQ Q7WAN9 1-183
    6. oligoketide cyclase/dehydrase-like [118101] (3)
      Pfam 03654
      1. Hypothetical protein CC1736 [118102]
        1. Caulobacter crescentus [TaxId: 155892] [118103] (1) picpic
          SQ Q9A7I7
      2. Hypothetical protein TTHA0849 [143837]
        1. Thermus thermophilus [TaxId: 274] [143838] (4) picpic
          SQ Q5SK03 2-147
      3. Multifunctional enzyme TcmN, cyclase/aromatase domain [160740]
        1. Streptomyces glaucescens [TaxId: 1907] [160741] (3) picpic
          SQ P16559 1-152! SQ P16559 1-155
    7. PA1206-like [143839] (1)
      1. Hypothetical protein PA1206 [143840]
        1. Pseudomonas aeruginosa [TaxId: 287] [143841] (2) picpic
          SQ Q9I4D2 1-151
    8. Atu1531-like [160742] (2)
      Pfam 10604; Polyketide cyclase/dehydrase and lipid transport
      1. Uncharacterized protein XoxI [160743]
        1. Bacillus cereus [TaxId: 1396] [160744] (2) picpic
          SQ Q81AY6 3-140
      2. Uncharacterized protein Atu1531 [160745]
        1. Agrobacterium tumefaciens [TaxId: 358] [160746] (2) picpic
          SQ Q7CZ16 1-133
    9. Smu440-like [160747] (1)
      PfamB 094079
      1. Hypothetical protein SMU440 [160748]
        1. Streptococcus mutans [TaxId: 1309] [160749] (2) picpic
          SQ Q8DVN6 1-137
    10. CoxG-like [160750] (2)
      Pfam 06240
      1. Hypothetical protein APE2225 [160751]
        1. Aeropyrum pernix [TaxId: 56636] [160752] (2) picpic
          SQ Q9Y9R3 1-147
      2. Hypothetical protein GKP20 [160753]
        1. Geobacillus kaustophilus [TaxId: 1462] [160754] (1) picpic
          SQ Q5QL47 1-147
  8. Rbstp2229 protein [111171] (1)
    forms segment-swapped dimers further organized in hexamers
    link to SUPERFAMILY database - Superfamily
    1. Rbstp2229 protein [111172] (1)
      1. Rbstp2229 protein [111173]
        1. Bacillus stearothermophilus [TaxId: 1422] [111174] (1) picpic
          SQ P84137
  9. RalF, C-terminal domain [118104] (1)
    contains a single copy of this fold decorated with additional structures
    link to SUPERFAMILY database - Superfamily
    1. RalF, C-terminal domain [118105] (1)
      1. RalF, C-terminal domain [118106]
        1. Legionella pneumophila [TaxId: 446] [118107] (1) picpic
          SQ Q8RT31 2-353
  10. YwmB-like [143842] (1)
    duplication: tandem repeat of two circularly permuted motifs, alpha-beta-alpha-beta(4), assembled as in the TATA-box binding domain; forms a swapped dimer by exchanging the equivalent parts of the C-terminal motifs
    link to SUPERFAMILY database - Superfamily
    1. YwmB-like [143843] (1)
      1. Hypothetical protein YwmB [143844]
        1. Bacillus subtilis [TaxId: 1423] [143845] (1) picpic
          SQ O32277 31-244
  11. YugN-like [160755] (1)
    1. YugN-like [160756] (1)
      Pfam 08868
      1. Uncharacterized protein ABC2387 [160757]
        YugN homologue
        1. Bacillus clausii [TaxId: 79880] [160758] (1) picpic
          SQ Q5WFD8 1-114
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk