Structural Classification of Proteins

Superfamily: TATA-box binding protein-like

: uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: TBP-like [55944]
beta-alpha-beta(4)-alpha
Superfamily: TATA-box binding protein-like [55945]
uperfamily

Families:

TATA-box binding protein (TBP), C-terminal domain [55946] (5)
duplication: consists of two clear structural repeats
1. TATA-box binding protein (TBP), C-terminal domain [55947]
  structure of the N-terminal domain is not known yet
  1. Human (Homo sapiens) [TaxId: 9606] [55948] (5)
    1. 1cdw
      protein/DNA complex
      1. region a:155-252 [41212]
      2. region a:253-333 [41213]
    2. 1nvp
      1. region a:159-252 [92209]
      2. region a:253-338 [92210]
    3. 1jfi
      1. region c:356-456 [62938]
      2. region c:457-538 [62939]
    4. 1c9b
      1. region b:158-252 [41216]
      2. region b:253-337 [41217]
      3. region f:158-252 [41218]
      4. region f:253-337 [41219]
      5. region j:158-252 [41220]
      6. region j:253-337 [41221]
      7. region n:158-252 [41222]
      8. region n:253-337 [41223]
      9. region r:158-252 [41224]
      10. region r:253-337 [41225]
    5. 1tgh
      protein/DNA complex
      1. region a:155-252 [41214]
      2. region a:253-334 [41215]
  2. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [55949] (13)
    1. 1qna
      1. region a:17-115 [41226]
      2. region a:116-198 [41227]
      3. region b:12-115 [41228]
      4. region b:116-197 [41229]
    2. 1qn5
      1. region a:16-115 [41234]
      2. region a:116-198 [41235]
      3. region b:12-115 [41236]
      4. region b:116-197 [41237]
    3. 1qn3
      1. region a:16-115 [41250]
      2. region a:116-198 [41251]
      3. region b:12-115 [41252]
      4. region b:116-198 [41253]
    4. 1qn4
      1. region a:16-115 [41238]
      2. region a:116-198 [41239]
      3. region b:12-115 [41240]
      4. region b:116-198 [41241]
    5. 1qn9
      1. region a:16-115 [41230]
      2. region a:116-198 [41231]
      3. region b:12-115 [41232]
      4. region b:116-197 [41233]
    6. 1qne
      1. region a:12-115 [41246]
      2. region a:116-198 [41247]
      3. region b:11-115 [41248]
      4. region b:116-198 [41249]
    7. 1qn8
      1. region a:16-115 [41258]
      2. region a:116-198 [41259]
      3. region b:12-115 [41260]
      4. region b:116-198 [41261]
    8. 1qn6
      1. region a:15-115 [41254]
      2. region a:116-198 [41255]
      3. region b:12-115 [41256]
      4. region b:116-198 [41257]
    9. 1vok
      complexed with so4
      1. region a:7-115 [41242]
      2. region a:116-198 [41243]
      3. region b:12-115 [41244]
      4. region b:116-199 [41245]
    10. 1qn7
      1. region a:13-115 [41262]
      2. region a:116-198 [41263]
      3. region b:12-115 [41264]
      4. region b:116-197 [41265]
    11. 1qnb
      1. region a:16-115 [41266]
      2. region a:116-198 [41267]
      3. region b:12-115 [41268]
      4. region b:116-198 [41269]
    12. 1qnc
      1. region a:16-115 [41270]
      2. region a:116-198 [41271]
      3. region b:12-115 [41272]
      4. region b:116-198 [41273]
    13. 1vol
      protein/DNA complex
      1. region b:12-115 [41274]
      2. region b:116-198 [41275]
  3. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55950] (8)
    1. 1nh2
      complexed with 5iu
      1. region a:61-155 [91872]
      2. region a:156-240 [91873]
    2. 1ytb
      complexed with DNA containing TATA-box
      protein/DNA complex
      1. region a:61-155 [41276]
      2. region a:156-240 [41277]
      3. region b:61-155 [41278]
      4. region b:156-240 [41279]
    3. 1rm1
      automatically matched to d1ngma1
      1. region a:61-155 [118778]
    4. 1rm1
      automatically matched to d1ngma2
      1. region a:156-240 [118779]
    5. 1ytf
      protein/DNA complex
      1. region a:61-155 [41280]
      2. region a:156-240 [41281]
    6. 1tbp
      1. region a:61-155 [41282]
      2. region a:156-240 [41283]
      3. region b:61-155 [41284]
      4. region b:156-240 [41285]
    7. 1ngm
      a ternary complex with DNA and Brf1 peptide
      1. region a:61-155 [85685]
      2. region a:156-240 [85686]
      3. region e:61-155 [85688]
      4. region e:156-240 [85689]
      5. region i:61-155 [85691]
      6. region i:156-240 [85692]
      7. region m:61-155 [85694]
      8. region m:156-240 [85695]
    8. 1tba
      1. region b:61-155 [41286]
      2. region b:156-240 [41287]
  4. Archaeon Pyrococcus woesei [TaxId: 2262] [55951] (3)
    1. 1ais
      protein/DNA complex; complexed with 5iu
      1. region a:1-92 [41288]
      2. region a:93-181 [41289]
    2. 1d3u
      1. region a:1-92 [41290]
      2. region a:93-181 [41291]
    3. 1pcz
      1. region a:2-92 [41292]
      2. region a:93-184 [41293]
      3. region b:2-92 [41294]
      4. region b:93-184 [41295]
  5. Archaeon Sulfolobus acidocaldarius [TaxId: 2285] [103238] (1)
    1. 1mp9
      1. region a:5-96 [91385]
      2. region a:97-197 [91386]
      3. region b:3-96 [91387]
      4. region b:97-191 [91388]
DNA repair glycosylase, N-terminal domain [55952] (2)
contains a single copy of this fold
1. 3-Methyladenine DNA glycosylase II (gene alkA or aidA) [55953]
  1. Escherichia coli [TaxId: 562] [55954] (35)
    SQ P04395
    1. 1mpg
      complexed with gol
      1. region a:1-99 [41296]
      2. region b:1-99 [41297]
    2. 3cw7
      automatically matched to d1diza2
      complexed with 8og
      1. region a:1-99 [157028]
    3. 3cw7
      automatically matched to d1diza2
      complexed with 8og
      1. region b:1-99 [157030]
    4. 3cw7
      automatically matched to d1diza2
      complexed with 8og
      1. region c:1-99 [157032]
    5. 3cw7
      automatically matched to d1diza2
      complexed with 8og
      1. region d:1-99 [157034]
    6. 3cws
      automatically matched to d1diza2
      complexed with 2fi
      1. region a:1-99 [157053]
    7. 3cws
      automatically matched to d1diza2
      complexed with 2fi
      1. region b:1-99 [157055]
    8. 3cws
      automatically matched to d1diza2
      complexed with 2fi
      1. region c:1-99 [157057]
    9. 3cws
      automatically matched to d1diza2
      complexed with 2fi
      1. region d:1-99 [157059]
    10. 3cwa
      automatically matched to d1diza2
      complexed with 8og
      1. region a:1-99 [157038]
    11. 3cwa
      automatically matched to d1diza2
      complexed with 8og
      1. region b:1-99 [157040]
    12. 3cwa
      automatically matched to d1diza2
      complexed with 8og
      1. region c:1-99 [157042]
    13. 3cwa
      automatically matched to d1diza2
      complexed with 8og
      1. region d:1-99 [157044]
    14. 1pvs
      complexed with 7hp
      1. region a:1-99 [104330]
      2. region b:1-99 [104332]
    15. 3cvs
      automatically matched to d1diza2
      complexed with 8og
      1. region a:1-99 [157012]
    16. 3cvs
      automatically matched to d1diza2
      complexed with 8og
      1. region b:1-99 [157014]
    17. 3cvs
      automatically matched to d1diza2
      complexed with 8og
      1. region c:1-99 [157016]
    18. 3cvs
      automatically matched to d1diza2
      complexed with 8og
      1. region d:1-99 [157018]
    19. 3cwt
      automatically matched to d1diza2
      complexed with 2fi
      1. region a:1-99 [157061]
    20. 3cwt
      automatically matched to d1diza2
      complexed with 2fi
      1. region b:1-99 [157063]
    21. 3cwt
      automatically matched to d1diza2
      complexed with 2fi
      1. region c:1-99 [157065]
    22. 3cwt
      automatically matched to d1diza2
      complexed with 2fi
      1. region d:1-99 [157067]
    23. 3cvt
      automatically matched to d1diza2
      complexed with 8og
      1. region a:1-99 [157020]
    24. 3cvt
      automatically matched to d1diza2
      complexed with 8og
      1. region b:1-99 [157022]
    25. 3cvt
      automatically matched to d1diza2
      complexed with 8og
      1. region c:1-99 [157024]
    26. 3cvt
      automatically matched to d1diza2
      complexed with 8og
      1. region d:1-99 [157026]
    27. 1diz
      protein/DNA complex; complexed with na, nri
      1. region a:1-99 [41298]
      2. region b:1-99 [41299]
    28. 3cwu
      automatically matched to d1diza2
      complexed with 2fe
      1. region a:1-99 [157069]
    29. 3cwu
      automatically matched to d1diza2
      complexed with 2fe
      1. region b:1-99 [157071]
    30. 3cwu
      automatically matched to d1diza2
      complexed with 2fe
      1. region c:1-99 [157073]
    31. 3cwu
      automatically matched to d1diza2
      complexed with 2fe
      1. region d:1-99 [157075]
    32. 3d4v
      automatically matched to d1diza2
      complexed with fmg
      1. region a:1-99 [157303]
    33. 3d4v
      automatically matched to d1diza2
      complexed with fmg
      1. region b:1-99 [157305]
    34. 3d4v
      automatically matched to d1diza2
      complexed with fmg
      1. region c:1-99 [157307]
    35. 3d4v
      automatically matched to d1diza2
      complexed with fmg
      1. region d:1-99 [157309]
2. 8-oxoguanine glycosylase [55955]
  1. Human (Homo sapiens) [TaxId: 9606] [55956] (23)
    1. 2noh
      automatically matched to d1ebma2
      complexed with 8og, ca; mutant
      1. region a:12-135 [138410]
    2. 1m3q
      complexed with ang, ca, drz; mutant
      1. region a:9-135 [91185]
    3. 1ko9
      complexed with so4
      1. region a:12-135 [68718]
    4. 1lwy
      borohydride trapped intermediate
      complexed with ped
      1. region a:9-135 [78286]
    5. 2nob
      automatically matched to d1ebma2
      complexed with 8og, ca; mutant
      1. region a:12-135 [138404]
    6. 1m3h
      complexed with ca, ddx; mutant
      1. region a:9-135 [91177]
    7. 1ebm
      complexed with ca, oxo; mutant
      1. region a:9-135 [41300]
    8. 1lww
      borohydride trapped intermediate
      complexed with brg, ca, ped
      1. region a:9-135 [78284]
    9. 2noe
      automatically matched to d1ebma2
      complexed with 8og, ca; mutant
      1. region a:12-135 [138406]
    10. 1n39
      complexed with 3dr, ca; mutant
      1. region a:9-135 [85290]
    11. 1hu0
      borohydride trapped intermediate complex
      complexed with ca, oxg, ped
      1. region a:9-135 [76724]
    12. 1n3a
      complexed with 3dr, ca; mutant
      1. region a:9-135 [85292]
    13. 1lwv
      borohydride trapped intermediate
      complexed with ang, ca, ped
      1. region a:9-135 [78282]
    14. 2nof
      automatically matched to d1ebma2
      complexed with 8og, ca; mutant
      1. region a:12-135 [138408]
    15. 1yqr
      automatically matched to d1ebma2
      complexed with 8og, ca; mutant
      1. region a:12-135 [123898]
    16. 2nol
      automatically matched to d1ebma2
      complexed with 8og, ca; mutant
      1. region a:12-135 [138412]
    17. 1yqm
      automatically matched to d1ebma2
      complexed with 7gu, ca; mutant
      1. region a:12-135 [123894]
    18. 1yql
      automatically matched to d1ebma2
      complexed with ca, ppw; mutant
      1. region a:12-135 [123892]
    19. 2noz
      automatically matched to d1ebma2
      complexed with 8og, ca; mutant
      1. region a:12-135 [138415]
    20. 1yqk
      automatically matched to d1ebma2
      complexed with ca, gol; mutant
      1. region a:12-135 [123890]
    21. 1fn7
      complexed with 3dr, ca
      1. region a:9-135 [59893]
    22. 2i5w
      automatically matched to d1ebma2
      complexed with 8og, ca, gol; mutant
      1. region a:12-135 [137070]
    23. 1n3c
      complexed with 8og, ca; mutant
      1. region a:9-135 [85294]