Structural Classification of Proteins

Family: TATA-box binding protein (TBP), C-terminal domain

: duplication: consists of two clear structural repeats

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: TBP-like [55944]
beta-alpha-beta(4)-alpha
Superfamily: TATA-box binding protein-like [55945]
uperfamily
Family: TATA-box binding protein (TBP), C-terminal domain [55946]
duplication: consists of two clear structural repeats

Protein Domains:

TATA-box binding protein (TBP), C-terminal domain [55947]
structure of the N-terminal domain is not known yet
1. Human (Homo sapiens) [TaxId: 9606] [55948] (5)
  1. 1cdw
    protein/DNA complex
    1. region a:155-252 [41212]
    2. region a:253-333 [41213]
  2. 1nvp
    1. region a:159-252 [92209]
    2. region a:253-338 [92210]
  3. 1jfi
    1. region c:356-456 [62938]
    2. region c:457-538 [62939]
  4. 1c9b
    1. region b:158-252 [41216]
    2. region b:253-337 [41217]
    3. region f:158-252 [41218]
    4. region f:253-337 [41219]
    5. region j:158-252 [41220]
    6. region j:253-337 [41221]
    7. region n:158-252 [41222]
    8. region n:253-337 [41223]
    9. region r:158-252 [41224]
    10. region r:253-337 [41225]
  5. 1tgh
    protein/DNA complex
    1. region a:155-252 [41214]
    2. region a:253-334 [41215]
2. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [55949] (13)
  1. 1qna
    1. region a:17-115 [41226]
    2. region a:116-198 [41227]
    3. region b:12-115 [41228]
    4. region b:116-197 [41229]
  2. 1qn5
    1. region a:16-115 [41234]
    2. region a:116-198 [41235]
    3. region b:12-115 [41236]
    4. region b:116-197 [41237]
  3. 1qn3
    1. region a:16-115 [41250]
    2. region a:116-198 [41251]
    3. region b:12-115 [41252]
    4. region b:116-198 [41253]
  4. 1qn4
    1. region a:16-115 [41238]
    2. region a:116-198 [41239]
    3. region b:12-115 [41240]
    4. region b:116-198 [41241]
  5. 1qn9
    1. region a:16-115 [41230]
    2. region a:116-198 [41231]
    3. region b:12-115 [41232]
    4. region b:116-197 [41233]
  6. 1qne
    1. region a:12-115 [41246]
    2. region a:116-198 [41247]
    3. region b:11-115 [41248]
    4. region b:116-198 [41249]
  7. 1qn8
    1. region a:16-115 [41258]
    2. region a:116-198 [41259]
    3. region b:12-115 [41260]
    4. region b:116-198 [41261]
  8. 1qn6
    1. region a:15-115 [41254]
    2. region a:116-198 [41255]
    3. region b:12-115 [41256]
    4. region b:116-198 [41257]
  9. 1vok
    complexed with so4
    1. region a:7-115 [41242]
    2. region a:116-198 [41243]
    3. region b:12-115 [41244]
    4. region b:116-199 [41245]
  10. 1qn7
    1. region a:13-115 [41262]
    2. region a:116-198 [41263]
    3. region b:12-115 [41264]
    4. region b:116-197 [41265]
  11. 1qnb
    1. region a:16-115 [41266]
    2. region a:116-198 [41267]
    3. region b:12-115 [41268]
    4. region b:116-198 [41269]
  12. 1qnc
    1. region a:16-115 [41270]
    2. region a:116-198 [41271]
    3. region b:12-115 [41272]
    4. region b:116-198 [41273]
  13. 1vol
    protein/DNA complex
    1. region b:12-115 [41274]
    2. region b:116-198 [41275]
3. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55950] (8)
  1. 1nh2
    complexed with 5iu
    1. region a:61-155 [91872]
    2. region a:156-240 [91873]
  2. 1ytb
    complexed with DNA containing TATA-box
    protein/DNA complex
    1. region a:61-155 [41276]
    2. region a:156-240 [41277]
    3. region b:61-155 [41278]
    4. region b:156-240 [41279]
  3. 1rm1
    automatically matched to d1ngma1
    1. region a:61-155 [118778]
  4. 1rm1
    automatically matched to d1ngma2
    1. region a:156-240 [118779]
  5. 1ytf
    protein/DNA complex
    1. region a:61-155 [41280]
    2. region a:156-240 [41281]
  6. 1tbp
    1. region a:61-155 [41282]
    2. region a:156-240 [41283]
    3. region b:61-155 [41284]
    4. region b:156-240 [41285]
  7. 1ngm
    a ternary complex with DNA and Brf1 peptide
    1. region a:61-155 [85685]
    2. region a:156-240 [85686]
    3. region e:61-155 [85688]
    4. region e:156-240 [85689]
    5. region i:61-155 [85691]
    6. region i:156-240 [85692]
    7. region m:61-155 [85694]
    8. region m:156-240 [85695]
  8. 1tba
    1. region b:61-155 [41286]
    2. region b:156-240 [41287]
4. Archaeon Pyrococcus woesei [TaxId: 2262] [55951] (3)
  1. 1ais
    protein/DNA complex; complexed with 5iu
    1. region a:1-92 [41288]
    2. region a:93-181 [41289]
  2. 1d3u
    1. region a:1-92 [41290]
    2. region a:93-181 [41291]
  3. 1pcz
    1. region a:2-92 [41292]
    2. region a:93-184 [41293]
    3. region b:2-92 [41294]
    4. region b:93-184 [41295]
5. Archaeon Sulfolobus acidocaldarius [TaxId: 2285] [103238] (1)
  1. 1mp9
    1. region a:5-96 [91385]
    2. region a:97-197 [91386]
    3. region b:3-96 [91387]
    4. region b:97-191 [91388]