Family: DNA polymerase processivity factor

duplication: consists of two domains of this fold

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a+b) [53931]
   Mainly antiparallel beta sheets (segregated alpha and beta regions)
3. Fold: DNA clamp [55978]
   contains two helices and two beta sheets
   duplication: fold has internal pseudo two-fold symmetry
4. Superfamily: DNA clamp [55979]
   uperfamily
5. Family: DNA polymerase processivity factor [55983]
   duplication: consists of two domains of this fold

Protein Domains:

1. gp45 sliding clamp [55984]
   1. Bacteriophage RB69 [TaxId: 12353] [55985] (2)
      1. 1b77
         1. region a:1-110 [41362]
         2. region a:111-228 [41363]
         3. region b:1-110 [41364]
         4. region b:111-228 [41365]
         5. region c:1-110 [41366]
         6. region c:111-228 [41367]
      2. 1b8h
         1. region a:1-110 [41368]
         2. region a:111-228 [41369]
         3. region b:1-110 [41370]
         4. region b:111-228 [41371]
         5. region c:1-110 [41372]
         6. region c:111-228 [41373]
   2. Bacteriophage T4 [TaxId: 10665] [55986] (1)
      1. 1czd
         1. region a:1001-1110 [41374]
         2. region a:1111-1228 [41375]
         3. region b:2001-2110 [41376]
         4. region b:2111-2228 [41377]
         5. region c:3001-3110 [41378]
         6. region c:3111-3228 [41379]
2. UL42 [55987]
   1. Human herpesvirus type 1 [TaxId: 10298] [55988] (1)
      1. 1dml
         1. region a:29-169 [41380]
         2. region a:170-319 [41381]
         3. region c:29-169 [41382]
         4. region c:170-319 [41383]
         5. region e:28-169 [41384]
         6. region e:170-319 [41385]
         7. region g:28-169 [41386]
         8. region g:170-319 [41387]
3. Proliferating cell nuclear antigen (PCNA) [55989]
   1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55990] (5)
      SQ P15873
      1. 1plq
         CASP1
         complexed with hg
         1. region a:1-126 [41388]
         2. region a:127-258 [41389]
      2. 2od8
         automatically matched to d1plq_1
         1. region a:1-126 [139024]
      3. 2od8
         automatically matched to d1plq_2
         1. region a:127-255 [139025]
      4. 1sxj
         complexed with adp, atg, mg; mutant
         1. region f:1-126 [106091]
         2. region f:127-256 [106092]
         3. region g:1-126 [106093]
         4. region g:127-255 [106094]
         5. region h:1-126 [106095]
         6. region h:127-254 [106096]
      5. 1plr
         1. region a:1-126 [41390]
         2. region a:127-258 [41391]
   2. Human (Homo sapiens) [TaxId: 9606] [55991] (31)
      SQ P12004
      1. 1u7b
         complexed with a target peptide
         1. region a:1-126 [113083]
         2. region a:127-255 [113084]
      2. 1axc
         1. region a:1-126 [41392]
         2. region a:127-255 [41393]
         3. region c:1-126 [41394]
         4. region c:127-255 [41395]
         5. region e:1-126 [41396]
         6. region e:127-255 [41397]
      3. 1vym
         automatically matched to d1axca1
         1. region a:1-126 [120542]
      4. 1vym
         automatically matched to d1axca2
         1. region a:127-255 [120543]
      5. 1vym
         automatically matched to d1axca1
         1. region b:1-126 [120544]
      6. 1vym
         automatically matched to d1axca2
         1. region b:127-255 [120545]
      7. 1vym
         automatically matched to d1axca1
         1. region c:1-126 [120546]
      8. 1vym
         automatically matched to d1axca2
         1. region c:127-255 [120547]
      9. 1u76
         complexed with a target peptide
         1. region a:1-126 [113077]
         2. region a:127-255 [113078]
         3. region c:1-126 [113079]
         4. region c:127-255 [113080]
         5. region e:1-126 [113081]
         6. region e:127-255 [113082]
      10. 1vyj
          automatically matched to d1axca1
          1. region a:1-126 [120530]
      11. 1vyj
          automatically matched to d1axca2
          1. region a:127-255 [120531]
      12. 1vyj
          automatically matched to d1axca1
          1. region c:1-126 [120532]
      13. 1vyj
          automatically matched to d1axca2
          1. region c:127-255 [120533]
      14. 1vyj
          automatically matched to d1axca1
          1. region e:1-126 [120534]
      15. 1vyj
          automatically matched to d1axca2
          1. region e:127-255 [120535]
      16. 1vyj
          automatically matched to d1axca1
          1. region g:1-126 [120536]
      17. 1vyj
          automatically matched to d1axca2
          1. region g:127-255 [120537]
      18. 1vyj
          automatically matched to d1axca1
          1. region i:1-126 [120538]
      19. 1vyj
          automatically matched to d1axca2
          1. region i:127-255 [120539]
      20. 1vyj
          automatically matched to d1axca1
          1. region k:1-126 [120540]
      21. 1vyj
          automatically matched to d1axca2
          1. region k:127-255 [120541]
      22. 1ul1
          automatically matched to d1axca1
          complexed with mg
          1. region a:1-126 [119684]
      23. 1ul1
          automatically matched to d1axca2
          complexed with mg
          1. region a:127-255 [119685]
      24. 1ul1
          automatically matched to d1axca1
          complexed with mg
          1. region b:1-126 [119686]
      25. 1ul1
          automatically matched to d1axca2
          complexed with mg
          1. region b:127-255 [119687]
      26. 1ul1
          automatically matched to d1axca1
          complexed with mg
          1. region c:1-126 [119688]
      27. 1ul1
          automatically matched to d1axca2
          complexed with mg
          1. region c:127-255 [119689]
      28. 1w60
          automatically matched to d1axca1
          1. region a:1-126 [120648]
      29. 1w60
          automatically matched to d1axca2
          1. region a:127-255 [120649]
      30. 1w60
          automatically matched to d1axca1
          1. region b:1-126 [120650]
      31. 1w60
          automatically matched to d1axca2
          1. region b:127-255 [120651]
   3. Archaeon Pyrococcus furiosus [TaxId: 2261] [55992] (4)
      1. 1iz5
         mutant
         1. region a:2-120 [83834]
         2. region a:126-246 [83835]
         3. region b:2-120 [83836]
         4. region b:126-246 [83837]
      2. 1ge8
         mutant
         1. region a:2-117 [41398]
         2. region a:126-247 [41399]
      3. 1iz4
         mutant
         1. region a:2-120 [83832]
         2. region a:126-247 [83833]
      4. 1isq
         complexed with ace; mutant
         1. region a:2-119 [76779]
         2. region a:126-247 [76780]
   4. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [103254] (3)
      1. 1rwz
         1. region a:1-122 [98005]
         2. region a:123-244 [98006]
      2. 1rxz
         complexed with a FEN-1 peptide, chain B
         1. region a:1-122 [98067]
         2. region a:123-245 [98068]
      3. 1rxm
         complexed with a FEN-1 peptide, chain B
         1. region a:1-122 [98035]
         2. region a:123-245 [98036]
   5. Archaeon Sulfolobus tokodaii [TaxId: 111955] [111175] (1)
      SQ Q975N2
      1. 1ud9
         complexed with zn
         1. region a:1-119 [107768]
         2. region a:127-245 [107769]
         3. region b:1-119 [107770]
         4. region b:127-245 [107771]
         5. region c:1-119 [107772]
         6. region c:127-245 [107773]
         7. region d:1-119 [107774]
         8. region d:127-245 [107775]
4. UL44 [111176]
   1. Human cytomegalovirus, HHV-5 [TaxId: 10359] [111177] (3)
      SQ P16790 1-290
      1. 1t6l
         1. region a:10-135 [106574]
         2. region a:136-270 [106575]
      2. 1yyp
         automatically matched to d1t6la1
         complexed with edo, so4
         1. region a:10-135 [124248]
      3. 1yyp
         automatically matched to d1t6la2
         complexed with edo, so4
         1. region a:136-270 [124249]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk