Structural Classification of Proteins
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Fold: Phospholipase D/nuclease

beta-alpha-beta-alpha-beta-alpha-beta(4)-alpha; mixed sheet: order 1765234

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Phospholipase D/nuclease [56023]
    beta-alpha-beta-alpha-beta-alpha-beta(4)-alpha; mixed sheet: order 1765234

Superfamilies:

  1. Phospholipase D/nuclease [56024] (5)
    link to SUPERFAMILY database - Superfamily
    1. Nuclease [56025] (1)
      1. Nuclease Nuc [56026]
        1. Salmonella typhimurium [TaxId: 90371] [56027] (2)
          1. 1byr picpic
            1. chain a [41450] picpiclink
          2. 1bys picpic
            complexed with wo4
            1. chain a [41451] picpiclink
    2. Phospholipase D [64391] (1)
      duplication: contains two domains of this fold arranged as in the Nuc dimer
      1. Phospholipase D [64392]
        1. Streptomyces sp. [TaxId: 1931] [64393] (8)
          SQ P84147
          1. 1v0w picpic
            complexed with po3
            1. region a:6-263 [108220] picpiclink
            2. region a:264-514 [108221] picpiclink
          2. 1f0i picpic
            complexed with po4
            1. region a:6-263 [59566] picpiclink
            2. region a:264-514 [59567] picpiclink
          3. 1v0u picpic
            complexed with po3
            1. region a:6-263 [108216] picpiclink
            2. region a:264-513 [108217] picpiclink
          4. 1v0t picpic
            complexed with po3
            1. region a:6-263 [108214] picpiclink
            2. region a:264-513 [108215] picpiclink
          5. 1v0r picpic
            complexed with wo5
            1. region a:6-263 [108210] picpiclink
            2. region a:264-514 [108211] picpiclink
          6. 1v0y picpic
            complexed with hi5
            1. region a:6-263 [108222] picpiclink
            2. region a:264-514 [108223] picpiclink
          7. 1v0v picpic
            complexed with po3
            1. region a:6-263 [108218] picpiclink
            2. region a:264-513 [108219] picpiclink
          8. 1v0s picpic
            1. region a:6-263 [108212] picpiclink
            2. region a:264-514 [108213] picpiclink
    3. Tyrosyl-DNA phosphodiesterase TDP1 [69815] (2)
      1. Tyrosyl-DNA phosphodiesterase TDP1 [69816]
        1. Human (Homo sapiens) [TaxId: 9606] [69817] (12)
          1. 1jy1 picpic
            1. region a:145-350 [67438] picpiclink
            2. region a:351-608 [67439] picpiclink
          2. 1rff picpic
            complexed with spm, vo4; mutant
            1. region a:162-350 [97376] picpiclink
            2. region a:351-608 [97377] picpiclink
            3. region b:162-350 [97378] picpiclink
            4. region b:351-607 [97379] picpiclink
          3. 1mu7 picpic
            complexed with gol, wo4; mutant
            1. region a:162-350 [79475] picpiclink
            2. region a:351-608 [79476] picpiclink
            3. region b:158-350 [79477] picpiclink
            4. region b:351-608 [79478] picpiclink
          4. 1rgt picpic
            complexed with otr, ots, spm, vo4; mutant
            1. region a:162-350 [97446] picpiclink
            2. region a:351-608 [97447] picpiclink
            3. region b:162-350 [97448] picpiclink
            4. region b:351-607 [97449] picpiclink
          5. 1mu9 picpic
            complexed with gol, vo4; mutant
            1. region a:162-350 [79479] picpiclink
            2. region a:351-608 [79480] picpiclink
            3. region b:159-350 [79481] picpiclink
            4. region b:351-608 [79482] picpiclink
          6. 1rg1 picpic
            complexed with ots, spm, vo4; mutant
            1. region a:162-350 [97415] picpiclink
            2. region a:351-608 [97416] picpiclink
            3. region b:162-350 [97417] picpiclink
            4. region b:351-607 [97418] picpiclink
          7. 1rg2 picpic
            complexed with otr, ots, spm, vo4; mutant
            1. region a:162-350 [97419] picpiclink
            2. region a:351-608 [97420] picpiclink
            3. region b:159-350 [97421] picpiclink
            4. region b:351-608 [97422] picpiclink
          8. 1qzq picpic
            1. region a:161-350 [96655] picpiclink
            2. region a:351-608 [96656] picpiclink
            3. region b:161-350 [96657] picpiclink
            4. region b:351-608 [96658] picpiclink
          9. 1rfi picpic
            complexed with spm, vo4; mutant
            1. region a:162-350 [97380] picpiclink
            2. region a:351-608 [97381] picpiclink
            3. region b:162-350 [97382] picpiclink
            4. region b:351-607 [97383] picpiclink
          10. 1rgu picpic
            complexed with ots, spm, vo4; mutant
            1. region a:162-350 [97450] picpiclink
            2. region a:351-608 [97451] picpiclink
            3. region b:162-350 [97452] picpiclink
            4. region b:351-607 [97453] picpiclink
          11. 1rh0 picpic
            complexed with ots, spm, vo4; mutant
            1. region a:162-350 [97458] picpiclink
            2. region a:351-608 [97459] picpiclink
            3. region b:162-350 [97460] picpiclink
            4. region b:351-607 [97461] picpiclink
          12. 1nop picpic
            complexed with a topoisomerase I-derived peptide, chain C
            complexed with vo4; mutant
            1. region a:162-350 [85928] picpiclink
            2. region a:351-608 [85929] picpiclink
            3. region b:159-350 [85930] picpiclink
            4. region b:351-607 [85931] picpiclink
        2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [111180] (1)
          SQ P38319 79-538
          1. 1q32 picpic
            1. region a:79-293 [104507] picpiclink
            2. region a:302-538 [104508] picpiclink
            3. region b:79-293 [104509] picpiclink
            4. region b:302-538 [104510] picpiclink
            5. region c:79-293 [104511] picpiclink
            6. region c:302-538 [104512] picpiclink
            7. region d:79-293 [104513] picpiclink
            8. region d:302-538 [104514] picpiclink
    4. Polyphosphate kinase C-terminal domain [143860] (2)
      C-terminal part of Pfam 02503; similar to PLD; contains two domains of this fold arranged as in the Nuc dimer
      1. Polyphosphate kinase, PPK [143861]
        1. Porphyromonas gingivalis [TaxId: 837] [143862] (4)
          SQ Q7MTR1 318-505! SQ Q7MTR1 506-691
          1. 2o8r picpicxrefxrefxrefxref
            complexed with so4; mutant
            1. region a:318-505 [138935] picpiclink
          2. 2o8r picpicxrefxrefxrefxref
            complexed with so4; mutant
            1. region a:506-691 [138936] picpiclink
          3. 2o8r picpicxrefxrefxrefxref
            automatically matched to 2O8R A:318-505
            complexed with so4; mutant
            1. region b:318-505 [138939] picpiclink
          4. 2o8r picpicxrefxrefxrefxref
            automatically matched to 2O8R A:506-691
            complexed with so4; mutant
            1. region b:506-690 [138940] picpiclink
        2. Escherichia coli [TaxId: 562] [143863] (8)
          SQ P0A7B1 315-501! SQ P0A7B1 502-688
          1. 1xdp picpicxrefxrefxrefxref
            automatically matched to 1XDO A:315-501
            complexed with atp, mg
            1. region a:315-501 [121898] picpiclink
          2. 1xdp picpicxrefxrefxrefxref
            automatically matched to 1XDO A:502-688
            complexed with atp, mg
            1. region a:502-688 [121899] picpiclink
          3. 1xdp picpicxrefxrefxrefxref
            automatically matched to 1XDO A:315-501
            complexed with atp, mg
            1. region b:315-501 [121902] picpiclink
          4. 1xdp picpicxrefxrefxrefxref
            automatically matched to 1XDO A:502-688
            complexed with atp, mg
            1. region b:502-688 [121903] picpiclink
          5. 1xdo picpicxrefxrefxrefxref
            1. region a:315-501 [121890] picpiclink
          6. 1xdo picpicxrefxrefxrefxref
            1. region a:502-688 [121891] picpiclink
          7. 1xdo picpicxrefxrefxrefxref
            automatically matched to 1XDO A:315-501
            1. region b:315-501 [121894] picpiclink
          8. 1xdo picpicxrefxrefxrefxref
            automatically matched to 1XDO A:502-688
            1. region b:502-688 [121895] picpiclink
    5. TrmB middle domain-like [160780] (1)
      N-terminal part of PfamB 004822
      1. Transcriptional regulator TrmB [160781]
        1. Thermococcus litoralis [TaxId: 2265] [160782] (1)
          SQ Q7LYW4 110-246
          1. 2f5t picpicxref
            complexed with imd, mal
            1. region x:110-246 [146997] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
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