Structural Classification of Proteins
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Superfamily: Phospholipase D/nuclease

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Phospholipase D/nuclease [56023]
    beta-alpha-beta-alpha-beta-alpha-beta(4)-alpha; mixed sheet: order 1765234
  4. Superfamily: Phospholipase D/nuclease [56024]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Nuclease [56025] (1)
    1. Nuclease Nuc [56026]
      1. Salmonella typhimurium [TaxId: 90371] [56027] (2) picpic
  2. Phospholipase D [64391] (1)
    duplication: contains two domains of this fold arranged as in the Nuc dimer
    1. Phospholipase D [64392]
      1. Streptomyces sp. [TaxId: 1931] [64393] (8) picpic
        SQ P84147
  3. Tyrosyl-DNA phosphodiesterase TDP1 [69815] (2)
    1. Tyrosyl-DNA phosphodiesterase TDP1 [69816]
      1. Human (Homo sapiens) [TaxId: 9606] [69817] (12) picpic
      2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [111180] (1) picpic
        SQ P38319 79-538
  4. Polyphosphate kinase C-terminal domain [143860] (2)
    C-terminal part of Pfam 02503; similar to PLD; contains two domains of this fold arranged as in the Nuc dimer
    1. Polyphosphate kinase, PPK [143861]
      1. Porphyromonas gingivalis [TaxId: 837] [143862] (4) picpic
        SQ Q7MTR1 318-505! SQ Q7MTR1 506-691
      2. Escherichia coli [TaxId: 562] [143863] (8) picpic
        SQ P0A7B1 315-501! SQ P0A7B1 502-688
  5. TrmB middle domain-like [160780] (1)
    N-terminal part of PfamB 004822
    1. Transcriptional regulator TrmB [160781]
      1. Thermococcus litoralis [TaxId: 2265] [160782] (1) picpic
        SQ Q7LYW4 110-246
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk