Structural Classification of Proteins
Family: Translational machinery components
Lineage:
Root:
scop
Class:
Alpha and beta proteins (a+b)
[53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold:
Ribosomal protein S5 domain 2-like
[54210]
core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover
Superfamily:
Ribosomal protein S5 domain 2-like
[54211]
uperfamily
Family:
Translational machinery components
[54212]
Protein Domains:
Elongation factor G (EF-G), domain IV [54213]
Thermus thermophilus
[TaxId: 274]
[54214] (9)
2bv3
automatically matched to d1dar_3
complexed with gnp, mg; mutant
region a:479-599
[129239]
2efg
complexed with gdp
region a:476-599
[37548]
2bm0
automatically matched to d1dar_3
complexed with gdp, mg; mutant
region a:479-599
[128750]
1fnm
complexed with gdp, mg; mutant
region a:483-599
[37546]
1dar
complexed with gdp
region a:476-599
[37547]
2bm1
automatically matched to d1dar_3
complexed with gdp, mg; mutant
region a:479-599
[128755]
1efg
complexed with gdp
region a:477-599
[37550]
1elo
region a:476-599
[37549]
1ktv
region a:476-599
[91029]
region b:476-599
[91033]
Thermus thermophilus, EF-G-2
[TaxId: 274]
[142925] (2)
SQ
Q5SI76
448-562
TTHA1498
2dy1
automatically matched to d1wdta3
complexed with gtp, mg
region a:455-569
[146609]
1wdt
complexed with gtp, mg
region a:455-569
[120913]
Elongation factor 2 (eEF-2), domain IV [82575]
Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]
[82576] (22)
SQ
P32324
1n0u
complexed with so1
region a:561-725
[79759]
1u2r
complexed with apr, dde, gdp, mg, so1
region a:561-725
[107619]
1n0v
region c:561-725
[79764]
region d:561-725
[79769]
2npf
automatically matched to d1n0ua3
complexed with gdp, mou
region a:561-725
[138434]
2npf
automatically matched to d1n0ua3
complexed with gdp, mou
region b:561-725
[138439]
1zm9
automatically matched to d1n0ua3
complexed with dde, p34
region a:561-725
[125338]
1zm9
automatically matched to d1n0ua3
complexed with dde, p34
region c:561-725
[125344]
1zm9
automatically matched to d1n0ua3
complexed with dde, p34
region e:561-725
[125350]
1zm4
automatically matched to d1n0ua3
complexed with dde, tad
region a:561-725
[125318]
1zm4
automatically matched to d1n0ua3
complexed with dde, tad
region c:561-725
[125324]
1zm4
automatically matched to d1n0ua3
complexed with dde, tad
region e:561-725
[125330]
2e1r
automatically matched to d1n0ua3
complexed with gdp, sod
region a:561-725
[131968]
1zm3
automatically matched to d1n0ua3
complexed with dde
region a:561-725
[125300]
1zm3
automatically matched to d1n0ua3
complexed with dde
region c:561-725
[125306]
1zm3
automatically matched to d1n0ua3
complexed with dde
region e:561-725
[125312]
1zm2
automatically matched to d1n0ua3
complexed with apr, dde
region a:561-725
[125282]
1zm2
automatically matched to d1n0ua3
complexed with apr, dde
region c:561-725
[125288]
1zm2
automatically matched to d1n0ua3
complexed with apr, dde
region e:561-725
[125294]
2p8z
automatically matched to d1n0ua3
complexed with apr, dde, gnp, so1
region t:561-724
[139553]
2p8x
automatically matched to d1n0ua3
complexed with apr, dde, gnp
region t:561-724
[139543]
2p8y
automatically matched to d1n0ua3
complexed with apr, dde, gdp, so1
region t:561-724
[139548]
2p8w
automatically matched to d1n0ua3
complexed with gnp
region t:561-724
[139538]
Ribosomal protein S5, C-terminal domain [54215]
Bacillus stearothermophilus
[TaxId: 1422]
[54216] (1)
1pkp
region a:78-148
[37551]
Thermus thermophilus
[TaxId: 274]
[54217] (36)
SQ
P27152
! SQ
P80373
2uub
automatically matched to d1i94e1
complexed with 6mz, cm0, k, mg, par, zn
region e:74-154
[139936]
1fjg
complexed with mg, par, scm, sry, zn
region e:74-154
[37553]
1j5e
complexed with unx, zn
region e:74-154
[71547]
2uxc
automatically matched to d1i94e1
complexed with k, mg, par, zn
region e:74-154
[140007]
2uuc
automatically matched to d1i94e1
complexed with 6mz, cm0, k, mg, par, zn
region e:74-154
[139956]
2uua
automatically matched to d1i94e1
complexed with 6mz, cm0, k, mg, par, zn
region e:74-154
[139916]
1xmq
complexed with mg, par, t6a, zn
region e:74-154
[115533]
1n32
complexed with mg, par, psu, zn
region e:74-154
[79873]
2uu9
automatically matched to d1i94e1
complexed with 6mz, cm0, k, mg, par, zn
region e:74-154
[139896]
1xnq
complexed with mg, par, zn
region e:74-154
[115607]
1xnr
complexed with mg, par, zn
region e:74-154
[115629]
1hr0
complexed with mg, zn
region e:74-154
[37554]
1hnz
complexed with hyg, mg, zn
region e:74-154
[37555]
2j02
automatically matched to d1i94e1
complexed with 5mu, mg, par, zn
region e:74-154
[137869]
2j00
automatically matched to d1i94e1
complexed with 5mu, mg, par, zn
region e:74-154
[137842]
1xmo
complexed with mg, mnu, par, t6a, zn
region e:74-154
[115503]
1hnw
complexed with mg, tac, zn
region e:74-154
[37556]
2e5l
automatically matched to d1i94e1
complexed with zn
region e:74-154
[132028]
1i94
complexed with mg, wo2, zn
region e:74-157
[61995]
1hnx
complexed with mg, pcy, zn
region e:74-154
[37557]
1n33
complexed with mg, par, psu, zn
region e:74-154
[79895]
2hhh
automatically matched to d1i94e1
complexed with ksg
region e:74-154
[136480]
1i96
complexed with mg, wo2, zn
region e:74-157
[62039]
1n34
complexed with zn
region e:74-154
[79917]
1i97
complexed with mg, tac, wo2, zn
region e:74-157
[62062]
1n36
complexed with zn
region e:74-154
[79940]
1i95
complexed with ede, mg, wo2, zn
region e:74-157
[62017]
2f4v
automatically matched to d1i94e1
complexed with ab9, d2c, k, mg, zn
region e:74-154
[132941]
2hgp
automatically matched to d1i94e1
region h:74-154
[136424]
2hgi
automatically matched to d1i94e1
region h:74-154
[136403]
2hgr
automatically matched to d1i94e1
region h:74-154
[136445]
2ow8
automatically matched to d1i94e1
complexed with 2mg, 4oc, 4su, 5mc, 5mu, 7mg, h2u, m2g, ma6, mia, psu, ur3
region f:74-154
[139402]
1yl4
automatically matched to d1i94e1
region h:74-154
[123600]
2b64
automatically matched to d1i94e1
complexed with psu, yyg
region e:74-154
[127936]
2b9o
automatically matched to d1i94e1
complexed with psu, yyg
region e:74-154
[128166]
2b9m
automatically matched to d1i94e1
complexed with psu, yyg
region e:74-154
[128129]
Escherichia coli
[TaxId: 562]
[159906] (24)
SQ
P0A7W1
78-158
2qal
automatically matched to 2AVY E:78-158
complexed with mg, nmy
region e:78-158
[150217]
2qan
automatically matched to 2AVY E:78-158
complexed with mg, nmy
region e:78-158
[150271]
2qbf
automatically matched to 2AVY E:78-158
complexed with mg
region e:78-158
[150491]
2qbd
automatically matched to 2AVY E:78-158
complexed with mg
region e:78-158
[150437]
1vs5
automatically matched to 2AVY E:78-158
complexed with ksg, mg
region e:78-158
[144439]
3df1
automatically matched to 2AVY E:78-158
complexed with hyg, mg
region e:78-158
[157606]
3df3
automatically matched to 2AVY E:78-158
complexed with hyg, mg
region e:78-158
[157660]
1vs7
automatically matched to 2AVY E:78-158
complexed with ksg, mg
region e:78-158
[144480]
2qoy
automatically matched to 2AVY E:78-158
complexed with mg, nmy, scm
region e:78-158
[151094]
2qp0
automatically matched to 2AVY E:78-158
complexed with mg, nmy, scm
region e:78-158
[151147]
2avy
Representative structure
complexed with mg
region e:78-158
[144846]
2aw7
automatically matched to 2AVY E:78-158
complexed with mg
region e:78-158
[144889]
2qb9
automatically matched to 2AVY E:78-158
complexed with lll, mg
region e:78-158
[150331]
2qbb
automatically matched to 2AVY E:78-158
complexed with lll, mg
region e:78-158
[150384]
2i2p
automatically matched to 2AVY E:78-158
complexed with mg
region e:78-158
[145424]
2i2u
automatically matched to 2AVY E:78-158
complexed with mg
region e:78-158
[145466]
2qbh
automatically matched to 2AVY E:78-158
complexed with lll, mg
region e:78-158
[150545]
2qbj
automatically matched to 2AVY E:78-158
complexed with lll, mg
region e:78-158
[150599]
2qou
automatically matched to 2AVY E:78-158
complexed with mg, scm
region e:78-158
[150988]
2qow
automatically matched to 2AVY E:78-158
complexed with mg, scm
region e:78-158
[151041]
2z4m
automatically matched to 2AVY E:78-158
complexed with mg, par
region e:78-158
[154109]
2vho
automatically matched to 2AVY E:78-158
complexed with mg
region e:78-158
[153126]
2z4k
automatically matched to 2AVY E:78-158
complexed with mg, par
region e:78-158
[154055]
2vhp
automatically matched to 2AVY E:78-158
complexed with mg
region e:78-158
[153148]
Ribosomal protein S9 [54218]
Thermus thermophilus
[TaxId: 274]
[54219] (39)
SQ
P80374
2vqe
automatically matched to d1fjgi_
complexed with k, mg, par, tm2, zn
region i:2-128
[153433]
1fjg
complexed with mg, par, scm, sry, zn
chain i
[37559]
2vqf
automatically matched to d1fjgi_
complexed with k, mg, par, tm2, zn
region i:2-128
[153452]
1j5e
complexed with unx, zn
chain i
[71552]
2uxc
automatically matched to d1fjgi_
complexed with k, mg, par, zn
region i:2-128
[140012]
1xmq
complexed with mg, par, t6a, zn
chain i
[115538]
1n32
complexed with mg, par, psu, zn
chain i
[79878]
1xnq
complexed with mg, par, zn
chain i
[115612]
1xnr
complexed with mg, par, zn
chain i
[115634]
1hr0
complexed with mg, zn
chain i
[37560]
1hnz
complexed with hyg, mg, zn
chain i
[37561]
2j02
automatically matched to d1fjgi_
complexed with 5mu, mg, par, zn
region i:2-128
[137874]
2j00
automatically matched to d1fjgi_
complexed with 5mu, mg, par, zn
region i:2-128
[137847]
2uxd
automatically matched to d1fjgi_
complexed with k, mg, par, zn
region i:2-128
[152289]
1xmo
complexed with mg, mnu, par, t6a, zn
chain i
[115508]
1hnw
complexed with mg, tac, zn
chain i
[37562]
2e5l
automatically matched to d1fjgi_
complexed with zn
region i:2-128
[132033]
3d5a
automatically matched to d1fjgi_
complexed with mg, zn
region i:2-128
[157343]
3d5c
automatically matched to d1fjgi_
complexed with mg, zn
region i:2-128
[157373]
1i94
complexed with mg, wo2, zn
chain i
[62000]
1hnx
complexed with mg, pcy, zn
chain i
[37563]
1n33
complexed with mg, par, psu, zn
chain i
[79900]
2hhh
automatically matched to d1fjgi_
complexed with ksg
region i:2-128
[136485]
1i96
complexed with mg, wo2, zn
chain i
[62044]
2uxb
automatically matched to d1fjgi_
complexed with k, mg, par, zn
region i:2-128
[152270]
1n34
complexed with zn
chain i
[79922]
2v46
automatically matched to d1fjgi_
complexed with 5mu, mg, zn
region i:2-128
[152491]
2v48
automatically matched to d1fjgi_
complexed with 5mu, mg, zn
region i:2-128
[152527]
1i97
complexed with mg, tac, wo2, zn
chain i
[62067]
1n36
complexed with zn
chain i
[79945]
1i95
complexed with ede, mg, wo2, zn
chain i
[62022]
2f4v
automatically matched to d1fjgi_
complexed with ab9, d2c, k, mg, zn
region i:2-128
[132946]
2qnh
automatically matched to d1fjgi_
complexed with 2mg, 5mc, 7mg, m2g, ma6, psu
region j:2-128
[150933]
2ow8
automatically matched to d1fjgi_
complexed with 2mg, 4oc, 4su, 5mc, 5mu, 7mg, h2u, m2g, ma6, mia, psu, ur3
region j:2-128
[139407]
2r1g
automatically matched to d1fjgi_
region g:2-128
[151522]
1yl4
automatically matched to d1fjgi_
region l:2-128
[123605]
2b64
automatically matched to d1fjgi_
complexed with psu, yyg
region i:2-128
[127941]
2b9o
automatically matched to d1fjgi_
complexed with psu, yyg
region i:2-128
[128171]
2b9m
automatically matched to d1fjgi_
complexed with psu, yyg
region i:2-128
[128134]
Escherichia coli
[TaxId: 562]
[159907] (26)
SQ
P0A7X3
3-129
2gy9
automatically matched to 2AVY I:3-129
region i:4-129
[145234]
2gyb
automatically matched to 2AVY I:3-129
region i:4-129
[145256]
2qal
automatically matched to 2AVY I:3-129
complexed with mg, nmy
region i:3-129
[150222]
2qan
automatically matched to 2AVY I:3-129
complexed with mg, nmy
region i:3-129
[150276]
2qbf
automatically matched to 2AVY I:3-129
complexed with mg
region i:3-129
[150496]
2qbd
automatically matched to 2AVY I:3-129
complexed with mg
region i:3-129
[150442]
1vs5
automatically matched to 2AVY I:3-129
complexed with ksg, mg
region i:3-129
[144443]
3df1
automatically matched to 2AVY I:3-129
complexed with hyg, mg
region i:3-129
[157611]
3df3
automatically matched to 2AVY I:3-129
complexed with hyg, mg
region i:3-129
[157665]
1vs7
automatically matched to 2AVY I:3-129
complexed with ksg, mg
region i:3-129
[144484]
2qoy
automatically matched to 2AVY I:3-129
complexed with mg, nmy, scm
region i:3-129
[151099]
2qp0
automatically matched to 2AVY I:3-129
complexed with mg, nmy, scm
region i:3-129
[151152]
2avy
Representative structure
complexed with mg
region i:3-129
[144850]
2aw7
automatically matched to 2AVY I:3-129
complexed with mg
region i:3-129
[144893]
2qb9
automatically matched to 2AVY I:3-129
complexed with lll, mg
region i:3-129
[150336]
2qbb
automatically matched to 2AVY I:3-129
complexed with lll, mg
region i:3-129
[150389]
2i2p
automatically matched to 2AVY I:3-129
complexed with mg
region i:3-129
[145428]
2i2u
automatically matched to 2AVY I:3-129
complexed with mg
region i:3-129
[145470]
2qbh
automatically matched to 2AVY I:3-129
complexed with lll, mg
region i:3-129
[150550]
2qbj
automatically matched to 2AVY I:3-129
complexed with lll, mg
region i:3-129
[150604]
2qou
automatically matched to 2AVY I:3-129
complexed with mg, scm
region i:3-129
[150993]
2qow
automatically matched to 2AVY I:3-129
complexed with mg, scm
region i:3-129
[151046]
2z4m
automatically matched to 2AVY I:3-129
complexed with mg, par
region i:3-129
[154114]
2vho
automatically matched to 2AVY I:3-129
complexed with mg
region i:3-129
[153131]
2z4k
automatically matched to 2AVY I:3-129
complexed with mg, par
region i:3-129
[154060]
2vhp
automatically matched to 2AVY I:3-129
complexed with mg
region i:3-129
[153153]
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Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright
© 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk