Structural Classification of Proteins
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Family: DNA gyrase/MutL, second domain

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Ribosomal protein S5 domain 2-like [54210]
    core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover
  4. Superfamily: Ribosomal protein S5 domain 2-like [54211]
    link to SUPERFAMILY database - Superfamily
  5. Family: DNA gyrase/MutL, second domain [54224]

Protein Domains:

  1. DNA mismatch repair protein MutL [54225]
    1. Escherichia coli [TaxId: 562] [54226] (6)
      1. 1b63 picpicxref
        complexed with anp, edo, mg
        1. region a:217-331 [37566] picpiclink
      2. 1nhi picpicxref
        complexed with anp, edo, k, mg
        1. region a:217-331 [85718] picpiclink
      3. 1b62 picpicxref
        complexed with adp, mg
        1. region a:217-332 [37567] picpiclink
      4. 1nhj picpicxref
        complexed with anp, mg, na; mutant
        1. region a:217-331 [85720] picpiclink
      5. 1nhh picpicxref
        complexed with anp, edo, mg, rb
        1. region a:217-331 [85716] picpiclink
      6. 1bkn picpicxref
        1. region a:217-331 [37568] picpiclink
        2. region b:617-731 [37569] picpiclink
  2. DNA mismatch repair protein PMS2 [69656]
    1. Human (Homo sapiens) [TaxId: 9606] [69657] (3)
      1. 1h7s picpicxref
        1. region a:232-365 [65705] picpiclink
        2. region b:232-365 [65707] picpiclink
      2. 1ea6 picpicxref
        complexed with adp, mg
        1. region a:232-364 [64871] picpiclink
        2. region b:232-364 [64873] picpiclink
      3. 1h7u picpicxref
        complexed with atg, mg
        1. region a:232-364 [65709] picpiclink
        2. region b:232-364 [65711] picpiclink
  3. DNA gyrase B [54227]
    1. Escherichia coli [TaxId: 562] [54228] (1)
      1. 1ei1 picpicxref
        complexed with anp, gol, so4; mutant
        1. region a:221-392 [37570] picpiclink
        2. region b:621-792 [37571] picpiclink
    2. Thermus thermophilus [TaxId: 274] [75352] (1)
      1. 1kij picpicxref
        complexed with fmt, nov
        1. region a:221-392 [72514] picpiclink
        2. region b:221-392 [72516] picpiclink
  4. DNA topoisomerase II [102751]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [102752] (2)
      1. 1pvg picpicxref
        complexed with anp, mg
        1. region a:246-406 [95161] picpiclink
        2. region b:246-405 [95163] picpiclink
      2. 1qzr picpicxref
        complexed with anp, cdx, mg
        1. region a:246-410 [96659] picpiclink
        2. region b:246-405 [96661] picpiclink
  5. Topoisomerase IV subunit B [102753]
    1. Escherichia coli [TaxId: 562] [102754] (1)
      1. 1s16 picpicxref
        complexed with anp, mg, so4
        1. region a:1217-1383 [98331] picpiclink
        2. region b:2217-2383 [98333] picpiclink
  6. Topoisomerase VI-B subunit [82577]
    contains an H2TH domain inserted in front of this domain and after the N-terminal ATPase domain
    1. Archaeon Sulfolobus shibatae [TaxId: 2286] [82578] (10)
      1. 2hkj picpicxrefxref
        automatically matched to d1mu5a2
        complexed with dms, mg, rdc
        1. region a:307-470 [136554] picpiclink
      2. 1z5b picpicxrefxrefxrefxref
        automatically matched to d1mu5a2
        complexed with adp, alf, mg, so4
        1. region a:307-469 [124465] picpiclink
      3. 1z5b picpicxrefxrefxrefxref
        automatically matched to d1mu5a2
        complexed with adp, alf, mg, so4
        1. region b:307-463 [124468] picpiclink
      4. 1z59 picpicxrefxref
        automatically matched to d1mu5a2
        complexed with adp, mg
        1. region a:307-470 [124456] picpiclink
      5. 1mu5 picpicxrefxref
        complexed with ca
        1. region a:307-470 [79473] picpiclink
      6. 1z5c picpicxrefxrefxrefxref
        automatically matched to d1mu5a2
        complexed with adp, mg, po4
        1. region a:307-469 [124471] picpiclink
      7. 1z5c picpicxrefxrefxrefxref
        automatically matched to d1mu5a2
        complexed with adp, mg, po4
        1. region b:307-463 [124474] picpiclink
      8. 1z5a picpicxrefxrefxrefxref
        automatically matched to d1mu5a2
        complexed with adp, mg
        1. region a:307-469 [124459] picpiclink
      9. 1z5a picpicxrefxrefxrefxref
        automatically matched to d1mu5a2
        complexed with adp, mg
        1. region b:307-463 [124462] picpiclink
      10. 1mx0 picpicxrefxref
        complexed with anp, mg, mse, na
        1. region a:307-467 [79619] picpiclink
        2. region b:307-458 [79622] picpiclink
        3. region c:307-469 [79625] picpiclink
        4. region d:307-464 [79628] picpiclink
        5. region e:307-461 [79631] picpiclink
        6. region f:307-463 [79634] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk