Structural Classification of Proteins

Family: Ribonuclease PH domain 1-like

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Ribosomal protein S5 domain 2-like [54210]
core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover
Superfamily: Ribosomal protein S5 domain 2-like [54211]
uperfamily
Family: Ribonuclease PH domain 1-like [54229]

Protein Domains:

Ribonuclease PH, domain 1 [102758]
1. Aquifex aeolicus [TaxId: 63363] [102759] (4)
  1. 1uds
    complexed with po4, so4; mutant
    1. region a:2-150 [99219]
  2. 1udq
    complexed with po4, so4; mutant
    1. region a:2-150 [99217]
  3. 1udo
    complexed with po4, so4; mutant
    1. region a:2-150 [99215]
  4. 1udn
    complexed with po4, so4
    1. region a:2-150 [99213]
2. Pseudomonas aeruginosa [TaxId: 287] [102760] (2)
  1. 1r6l
    complexed with nhe, so4
    1. region a:1-151 [97153]
  2. 1r6m
    complexed with po4
    1. region a:1-151 [97155]
3. Bacillus subtilis [TaxId: 1423] [102761] (3)
  1. 1oys
    mutant
    1. region a:1-151 [93758]
  2. 1oyp
    complexed with sul
    1. region a:1-151 [93734]
    2. region b:1-151 [93736]
    3. region c:1-151 [93738]
    4. region d:1-151 [93740]
    5. region e:1-151 [93742]
    6. region f:1-151 [93744]
  3. 1oyr
    complexed with cd, sul
    1. region a:1-151 [93746]
    2. region b:1-151 [93748]
    3. region c:1-151 [93750]
    4. region d:1-151 [93752]
    5. region e:1-151 [93754]
    6. region f:1-151 [93756]
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 [54230]
duplication of two-domain units formed by domains 1-2 and 4-5
1. Streptomyces antibioticus [TaxId: 1890] [54231] (2)
  1. 1e3h
    complexed with so4
    1. region a:3-151 [37572]
    2. region a:346-482 [37573]
  2. 1e3p
    complexed with so4, wo4
    1. region a:3-151 [37574]
    2. region a:346-482 [37575]
Exosome complex exonuclease RRP42 [159908]
1. Human (Homo sapiens) [TaxId: 9606] [159909] (1)
  SQ Q15024 5-191
  1. 2nn6
    mutant
    1. region e:5-191 [148303]
Exosome complex exonuclease RRP46 [159910]
1. Human (Homo sapiens) [TaxId: 9606] [159911] (1)
  SQ Q9NQT4 25-146
  1. 2nn6
    mutant
    1. region d:25-146 [148301]
Exosome complex exonuclease RRP45 [159912]
1. Human (Homo sapiens) [TaxId: 9606] [159913] (1)
  SQ Q86Y41 1-184
  1. 2nn6
    mutant
    1. region a:1-184 [148295]
Exosome complex exonuclease RRP43 [159914]
1. Human (Homo sapiens) [TaxId: 9606] [159915] (1)
  SQ Q96B26 7-187
  1. 2nn6
    mutant
    1. region c:7-187 [148299]
Exosome complex exonuclease MTR3 [159916]
1. Human (Homo sapiens) [TaxId: 9606] [159917] (1)
  SQ Q5RKV6 29-175
  1. 2nn6
    mutant
    1. region f:29-175 [148305]
Exosome complex exonuclease RRP41 [159918]
1. Human (Homo sapiens) [TaxId: 9606] [159919] (1)
  SQ Q9NPD3 7-151
  1. 2nn6
    mutant
    1. region b:6-150 [148297]
Exosome complex exonuclease 2,ECX2 [159920]
1. Archaeoglobus fulgidus [TaxId: 2234] [159921] (6)
  SQ O29756 3-178
  1. 2ba0
    1. region g:3-178 [146111]
  2. 2ba0
    automatically matched to 2BA0 G:3-178
    1. region h:3-178 [146113]
  3. 2ba0
    automatically matched to 2BA0 G:3-178
    1. region i:3-178 [146115]
  4. 2ba1
    automatically matched to 2BA0 G:3-178
    complexed with zn
    1. region g:3-178 [146123]
  5. 2ba1
    automatically matched to 2BA0 G:3-178
    complexed with zn
    1. region h:3-178 [146125]
  6. 2ba1
    automatically matched to 2BA0 G:3-178
    complexed with zn
    1. region i:3-178 [146127]
2. Sulfolobus solfataricus [TaxId: 2287] [159922] (51)
  SQ Q9UXC0 1-191
  1. 2je6
    complexed with 1pe, cl, peg; mutant
    1. region a:1-191 [147991]
  2. 2jea
    automatically matched to 2JE6 A:1-191
    complexed with 1pe; mutant
    1. region a:1-191 [148008]
  3. 2jeb
    automatically matched to 2JE6 A:1-191
    complexed with 1pe, cl, mn; mutant
    1. region a:1-191 [148015]
  4. 2br2
    automatically matched to 2JE6 A:1-191
    complexed with cl
    1. region a:1-191 [146165]
  5. 2br2
    automatically matched to 2JE6 A:1-191
    complexed with cl
    1. region c:1-191 [146169]
  6. 2br2
    automatically matched to 2JE6 A:1-191
    complexed with cl
    1. region e:1-191 [146173]
  7. 2br2
    automatically matched to 2JE6 A:1-191
    complexed with cl
    1. region g:1-191 [146177]
  8. 2br2
    automatically matched to 2JE6 A:1-191
    complexed with cl
    1. region i:1-191 [146181]
  9. 2br2
    automatically matched to 2JE6 A:1-191
    complexed with cl
    1. region k:1-191 [146185]
  10. 2br2
    automatically matched to 2JE6 A:1-191
    complexed with cl
    1. region m:1-191 [146189]
  11. 2br2
    automatically matched to 2JE6 A:1-191
    complexed with cl
    1. region o:1-191 [146193]
  12. 2br2
    automatically matched to 2JE6 A:1-191
    complexed with cl
    1. region q:1-191 [146197]
  13. 2br2
    automatically matched to 2JE6 A:1-191
    complexed with cl
    1. region s:1-191 [146201]
  14. 2br2
    automatically matched to 2JE6 A:1-191
    complexed with cl
    1. region u:1-191 [146205]
  15. 2br2
    automatically matched to 2JE6 A:1-191
    complexed with cl
    1. region w:1-191 [146209]
  16. 2c37
    automatically matched to 2JE6 A:1-191
    complexed with cl, na, rp5, u5p
    1. region a:1-191 [146228]
  17. 2c37
    automatically matched to 2JE6 A:1-191
    complexed with cl, na, rp5, u5p
    1. region c:1-191 [146232]
  18. 2c37
    automatically matched to 2JE6 A:1-191
    complexed with cl, na, rp5, u5p
    1. region e:1-191 [146236]
  19. 2c37
    automatically matched to 2JE6 A:1-191
    complexed with cl, na, rp5, u5p
    1. region g:1-191 [146240]
  20. 2c37
    automatically matched to 2JE6 A:1-191
    complexed with cl, na, rp5, u5p
    1. region i:1-191 [146244]
  21. 2c37
    automatically matched to 2JE6 A:1-191
    complexed with cl, na, rp5, u5p
    1. region k:1-191 [146248]
  22. 2c37
    automatically matched to 2JE6 A:1-191
    complexed with cl, na, rp5, u5p
    1. region m:1-191 [146252]
  23. 2c37
    automatically matched to 2JE6 A:1-191
    complexed with cl, na, rp5, u5p
    1. region o:1-191 [146256]
  24. 2c37
    automatically matched to 2JE6 A:1-191
    complexed with cl, na, rp5, u5p
    1. region q:1-191 [146260]
  25. 2c37
    automatically matched to 2JE6 A:1-191
    complexed with cl, na, rp5, u5p
    1. region s:1-191 [146264]
  26. 2c37
    automatically matched to 2JE6 A:1-191
    complexed with cl, na, rp5, u5p
    1. region u:1-191 [146268]
  27. 2c37
    automatically matched to 2JE6 A:1-191
    complexed with cl, na, rp5, u5p
    1. region w:1-191 [146272]
  28. 2c38
    automatically matched to 2JE6 A:1-191
    complexed with amp, cl
    1. region a:1-191 [146276]
  29. 2c38
    automatically matched to 2JE6 A:1-191
    complexed with amp, cl
    1. region c:1-191 [146280]
  30. 2c38
    automatically matched to 2JE6 A:1-191
    complexed with amp, cl
    1. region e:1-191 [146284]
  31. 2c38
    automatically matched to 2JE6 A:1-191
    complexed with amp, cl
    1. region g:1-191 [146288]
  32. 2c38
    automatically matched to 2JE6 A:1-191
    complexed with amp, cl
    1. region i:1-191 [146292]
  33. 2c38
    automatically matched to 2JE6 A:1-191
    complexed with amp, cl
    1. region k:1-191 [146296]
  34. 2c38
    automatically matched to 2JE6 A:1-191
    complexed with amp, cl
    1. region m:1-191 [146300]
  35. 2c38
    automatically matched to 2JE6 A:1-191
    complexed with amp, cl
    1. region o:1-191 [146304]
  36. 2c38
    automatically matched to 2JE6 A:1-191
    complexed with amp, cl
    1. region q:1-191 [146308]
  37. 2c38
    automatically matched to 2JE6 A:1-191
    complexed with amp, cl
    1. region s:1-191 [146312]
  38. 2c38
    automatically matched to 2JE6 A:1-191
    complexed with amp, cl
    1. region u:1-191 [146316]
  39. 2c38
    automatically matched to 2JE6 A:1-191
    complexed with amp, cl
    1. region w:1-191 [146320]
  40. 2c39
    automatically matched to 2JE6 A:1-191
    complexed with adp
    1. region a:1-191 [146324]
  41. 2c39
    automatically matched to 2JE6 A:1-191
    complexed with adp
    1. region c:1-191 [146328]
  42. 2c39
    automatically matched to 2JE6 A:1-191
    complexed with adp
    1. region e:1-191 [146332]
  43. 2c39
    automatically matched to 2JE6 A:1-191
    complexed with adp
    1. region g:1-191 [146336]
  44. 2c39
    automatically matched to 2JE6 A:1-191
    complexed with adp
    1. region i:1-191 [146338]
  45. 2c39
    automatically matched to 2JE6 A:1-191
    complexed with adp
    1. region k:1-191 [146342]
  46. 2c39
    automatically matched to 2JE6 A:1-191
    complexed with adp
    1. region m:1-191 [146346]
  47. 2c39
    automatically matched to 2JE6 A:1-191
    complexed with adp
    1. region o:1-191 [146350]
  48. 2c39
    automatically matched to 2JE6 A:1-191
    complexed with adp
    1. region q:1-191 [146354]
  49. 2c39
    automatically matched to 2JE6 A:1-191
    complexed with adp
    1. region s:1-191 [146358]
  50. 2c39
    automatically matched to 2JE6 A:1-191
    complexed with adp
    1. region u:1-191 [146362]
  51. 2c39
    automatically matched to 2JE6 A:1-191
    complexed with adp
    1. region w:1-191 [146366]
Exosome complex exonuclease 1, ECX1 [159923]
1. Sulfolobus solfataricus [TaxId: 2287] [159924] (50)
  SQ Q9UXC2 8-155
  1. 2je6
    complexed with 1pe, cl, peg; mutant
    1. region b:8-155 [147993]
  2. 2jea
    automatically matched to 2JE6 B:8-155
    complexed with 1pe; mutant
    1. region b:8-155 [148010]
  3. 2jeb
    automatically matched to 2JE6 B:8-155
    complexed with 1pe, cl, mn; mutant
    1. region b:9-155 [148017]
  4. 2br2
    complexed with cl
    1. region b:8-155 [146167]
  5. 2br2
    automatically matched to 2BR2 B:8-155
    complexed with cl
    1. region d:8-155 [146171]
  6. 2br2
    automatically matched to 2BR2 B:8-155
    complexed with cl
    1. region f:8-155 [146175]
  7. 2br2
    automatically matched to 2BR2 B:8-155
    complexed with cl
    1. region h:8-155 [146179]
  8. 2br2
    automatically matched to 2BR2 B:8-155
    complexed with cl
    1. region j:8-155 [146183]
  9. 2br2
    automatically matched to 2BR2 B:8-155
    complexed with cl
    1. region l:8-155 [146187]
  10. 2br2
    automatically matched to 2BR2 B:8-155
    complexed with cl
    1. region n:8-155 [146191]
  11. 2br2
    automatically matched to 2BR2 B:8-155
    complexed with cl
    1. region p:8-155 [146195]
  12. 2br2
    automatically matched to 2BR2 B:8-155
    complexed with cl
    1. region r:8-155 [146199]
  13. 2br2
    automatically matched to 2BR2 B:8-155
    complexed with cl
    1. region t:8-155 [146203]
  14. 2br2
    automatically matched to 2BR2 B:8-155
    complexed with cl
    1. region v:8-155 [146207]
  15. 2br2
    automatically matched to 2BR2 B:8-155
    complexed with cl
    1. region x:8-155 [146211]
  16. 2c37
    automatically matched to 2BR2 B:8-155
    complexed with cl, na, rp5, u5p
    1. region b:8-155 [146230]
  17. 2c37
    automatically matched to 2BR2 B:8-155
    complexed with cl, na, rp5, u5p
    1. region d:8-155 [146234]
  18. 2c37
    automatically matched to 2BR2 B:8-155
    complexed with cl, na, rp5, u5p
    1. region f:8-155 [146238]
  19. 2c37
    automatically matched to 2BR2 B:8-155
    complexed with cl, na, rp5, u5p
    1. region h:8-155 [146242]
  20. 2c37
    automatically matched to 2BR2 B:8-155
    complexed with cl, na, rp5, u5p
    1. region j:8-155 [146246]
  21. 2c37
    automatically matched to 2BR2 B:8-155
    complexed with cl, na, rp5, u5p
    1. region l:8-155 [146250]
  22. 2c37
    automatically matched to 2BR2 B:8-155
    complexed with cl, na, rp5, u5p
    1. region n:8-155 [146254]
  23. 2c37
    automatically matched to 2BR2 B:8-155
    complexed with cl, na, rp5, u5p
    1. region p:8-155 [146258]
  24. 2c37
    automatically matched to 2BR2 B:8-155
    complexed with cl, na, rp5, u5p
    1. region r:8-155 [146262]
  25. 2c37
    automatically matched to 2BR2 B:8-155
    complexed with cl, na, rp5, u5p
    1. region t:8-155 [146266]
  26. 2c37
    automatically matched to 2BR2 B:8-155
    complexed with cl, na, rp5, u5p
    1. region v:8-155 [146270]
  27. 2c37
    automatically matched to 2BR2 B:8-155
    complexed with cl, na, rp5, u5p
    1. region x:8-155 [146274]
  28. 2c38
    automatically matched to 2BR2 B:8-155
    complexed with amp, cl
    1. region b:8-155 [146278]
  29. 2c38
    automatically matched to 2BR2 B:8-155
    complexed with amp, cl
    1. region d:8-155 [146282]
  30. 2c38
    automatically matched to 2BR2 B:8-155
    complexed with amp, cl
    1. region f:8-155 [146286]
  31. 2c38
    automatically matched to 2BR2 B:8-155
    complexed with amp, cl
    1. region h:8-155 [146290]
  32. 2c38
    automatically matched to 2BR2 B:8-155
    complexed with amp, cl
    1. region j:8-155 [146294]
  33. 2c38
    automatically matched to 2BR2 B:8-155
    complexed with amp, cl
    1. region l:8-155 [146298]
  34. 2c38
    automatically matched to 2BR2 B:8-155
    complexed with amp, cl
    1. region n:8-155 [146302]
  35. 2c38
    automatically matched to 2BR2 B:8-155
    complexed with amp, cl
    1. region p:8-155 [146306]
  36. 2c38
    automatically matched to 2BR2 B:8-155
    complexed with amp, cl
    1. region r:8-155 [146310]
  37. 2c38
    automatically matched to 2BR2 B:8-155
    complexed with amp, cl
    1. region t:8-155 [146314]
  38. 2c38
    automatically matched to 2BR2 B:8-155
    complexed with amp, cl
    1. region v:9-155 [146318]
  39. 2c38
    automatically matched to 2BR2 B:8-155
    complexed with amp, cl
    1. region x:8-155 [146322]
  40. 2c39
    automatically matched to 2BR2 B:8-155
    complexed with adp
    1. region b:8-155 [146326]
  41. 2c39
    automatically matched to 2BR2 B:8-155
    complexed with adp
    1. region d:8-155 [146330]
  42. 2c39
    automatically matched to 2BR2 B:8-155
    complexed with adp
    1. region f:8-155 [146334]
  43. 2c39
    automatically matched to 2BR2 B:8-155
    complexed with adp
    1. region j:8-155 [146340]
  44. 2c39
    automatically matched to 2BR2 B:8-155
    complexed with adp
    1. region l:8-155 [146344]
  45. 2c39
    automatically matched to 2BR2 B:8-155
    complexed with adp
    1. region n:10-155 [146348]
  46. 2c39
    automatically matched to 2BR2 B:8-155
    complexed with adp
    1. region p:8-155 [146352]
  47. 2c39
    automatically matched to 2BR2 B:8-155
    complexed with adp
    1. region r:8-155 [146356]
  48. 2c39
    automatically matched to 2BR2 B:8-155
    complexed with adp
    1. region t:8-155 [146360]
  49. 2c39
    automatically matched to 2BR2 B:8-155
    complexed with adp
    1. region v:9-155 [146364]
  50. 2c39
    automatically matched to 2BR2 B:8-155
    complexed with adp
    1. region x:8-155 [146368]
2. Archaeoglobus fulgidus [TaxId: 2234] [159925] (6)
  SQ O29757 10-153
  1. 2ba0
    1. region d:10-153 [146105]
  2. 2ba0
    automatically matched to 2BA0 D:10-153
    1. region e:10-153 [146107]
  3. 2ba0
    automatically matched to 2BA0 D:10-153
    1. region f:10-153 [146109]
  4. 2ba1
    automatically matched to 2BA0 D:10-153
    complexed with zn
    1. region d:10-153 [146117]
  5. 2ba1
    automatically matched to 2BA0 D:10-153
    complexed with zn
    1. region e:10-153 [146119]
  6. 2ba1
    automatically matched to 2BA0 D:10-153
    complexed with zn
    1. region f:10-153 [146121]