Structural Classification of Proteins
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Fold: ATP-grasp

Consists of two subdomains with different alpha+beta folds
shares functional and structural similarities with the PIPK and protein kinase superfamilies

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: ATP-grasp [56058]
    Consists of two subdomains with different alpha+beta folds
    shares functional and structural similarities with the PIPK and protein kinase superfamilies

Superfamilies:

  1. Glutathione synthetase ATP-binding domain-like [56059] (9)
    link to SUPERFAMILY database - Superfamily
    1. ATP-binding domain of peptide synthetases [56060] (4)
      1. Prokaryotic glutathione synthetase, C-domain [56061]
        1. Escherichia coli [TaxId: 562] [56062] (4)
          1. 1gsa picpicxref
            complexed with adp, gtt, mg, so4
            1. region a:123-314 [41477] picpiclink
          2. 1gsh picpicxref
            1. region a:123-316 [41478] picpiclink
          3. 2glt picpicxref
            1. region a:123-316 [41479] picpiclink
          4. 1glv picpicxref
            mutant
            1. region a:123-316 [41480] picpiclink
      2. D-ala-D-ala ligase, C-domain [56063]
        1. Escherichia coli, gene ddlB [TaxId: 562] [56064] (3)
          1. 1iow picpicxref
            complexed with adp, mg, phy; mutant
            1. region a:97-306 [41481] picpiclink
          2. 2dln picpicxref
            complexed with adp, mg, phy
            1. region a:97-306 [41483] picpiclink
          3. 1iov picpicxref
            complexed with adp, mg, pob
            1. region a:97-306 [41482] picpiclink
      3. D-alanine:D-lactate ligase VanA, C-domain [56065]
        1. Leuconostoc mesenteroides, Ddl2 [TaxId: 1245] [56066] (1)
          1. 1ehi picpicxref
            complexed with adp, mg, phy
            1. region a:135-362 [41484] picpiclink
            2. region b:535-770 [41485] picpiclink
        2. Enterococcus faecium [TaxId: 1352] [64402] (1)
          1. 1e4e picpicxref
            complexed with adp, gol, mg, phy, so4
            1. region a:132-342 [59222] picpiclink
            2. region b:132-341 [59224] picpiclink
    2. Lysine biosynthesis enzyme LysX ATP-binding domain [103281] (1)
      1. Lysine biosynthesis enzyme LysX ATP-binding domain [103282]
        1. Thermus thermophilus [TaxId: 274] [103283] (2)
          1. 1uc8 picpicxref
            1. region a:89-280 [99166] picpiclink
            2. region b:89-280 [99168] picpiclink
          2. 1uc9 picpicxref
            complexed with adp
            1. region a:89-280 [99170] picpiclink
            2. region b:89-280 [99172] picpiclink
    3. BC ATP-binding domain-like [56067] (8)
      1. Biotin carboxylase (BC), domain 2 [56068]
        subunit of acetyl-CoA and pyruvate carboxylases
        1. Escherichia coli [TaxId: 562] [56069] (13)
          1. 2j9g picpicxrefxrefxrefxref
            automatically matched to d1bnca3
            complexed with adp, anp, mg, so4
            1. region a:115-330 [147939] picpiclink
          2. 2j9g picpicxrefxrefxrefxref
            automatically matched to d1bnca3
            complexed with adp, anp, mg, so4
            1. region b:115-330 [147942] picpiclink
          3. 2gpw picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1bnca3
            mutant
            1. region a:115-330 [135499] picpiclink
          4. 2gpw picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1bnca3
            mutant
            1. region b:115-330 [135502] picpiclink
          5. 2gpw picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1bnca3
            mutant
            1. region c:115-330 [135505] picpiclink
          6. 2gpw picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1bnca3
            mutant
            1. region d:115-330 [135508] picpiclink
          7. 1dv1 picpicxrefxref
            complexed with po4
            1. region a:115-330 [41486] picpiclink
            2. region b:115-330 [41487] picpiclink
          8. 2vr1 picpicxrefxrefxrefxref
            automatically matched to d1bnca3
            complexed with atf, cl
            1. region a:115-330 [153491] picpiclink
          9. 2vr1 picpicxrefxrefxrefxref
            automatically matched to d1bnca3
            complexed with atf, cl
            1. region b:115-330 [153494] picpiclink
          10. 1bnc picpicxrefxref
            complexed with po4
            1. region a:115-330 [41488] picpiclink
            2. region b:115-330 [41489] picpiclink
          11. 1dv2 picpicxrefxref
            complexed with atp; mutant
            1. region a:115-330 [41490] picpiclink
            2. region b:115-330 [41491] picpiclink
          12. 2gps picpicxrefxrefxrefxref
            automatically matched to d1bnca3
            mutant
            1. region a:115-330 [135489] picpiclink
          13. 2gps picpicxrefxrefxrefxref
            automatically matched to d1bnca3
            mutant
            1. region b:115-330 [135492] picpiclink
        2. Aquifex aeolicus [TaxId: 63363] [103284] (1)
          1. 1ulz picpicxrefxref
            mutant
            1. region a:115-328 [99577] picpiclink
      2. Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 [56070]
        1. Escherichia coli [TaxId: 562] [56071] (1)
          1. 1gso picpicxrefxref
            mutant
            1. region a:104-327 [41492] picpiclink
        2. Thermotoga maritima [TaxId: 2336] [111187] (1)
          SQ Q9X0X7
          1. 1vkz picpicxrefxref
            Structural genomics target
            complexed with edo; mutant
            1. region a:94-313 [108700] picpiclink
            2. region b:94-313 [108703] picpiclink
      3. N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 [56072]
        1. Escherichia coli [TaxId: 562] [56073] (6)
          1. 3etj picpicxrefxrefxrefxref
            automatically matched to d1b6ra3
            complexed with adp, cl, mg, pi; mutant
            1. region a:79-276 [158206] picpiclink
          2. 3etj picpicxrefxrefxrefxref
            automatically matched to d1b6ra3
            complexed with adp, cl, mg, pi; mutant
            1. region b:79-276 [158209] picpiclink
          3. 3eth picpicxrefxrefxrefxref
            automatically matched to d1b6ra3
            complexed with atp, mg; mutant
            1. region a:79-276 [158200] picpiclink
          4. 3eth picpicxrefxrefxrefxref
            automatically matched to d1b6ra3
            complexed with atp, mg; mutant
            1. region b:79-276 [158203] picpiclink
          5. 1b6r picpicxrefxref
            1. region a:79-276 [41493] picpiclink
          6. 1b6s picpicxrefxref
            1. region a:79-276 [41494] picpiclink
            2. region b:79-276 [41495] picpiclink
            3. region c:79-276 [41496] picpiclink
            4. region d:79-276 [41497] picpiclink
      4. Glycinamide ribonucleotide transformylase PurT, domain 2 [56074]
        1. Escherichia coli [TaxId: 562] [56075] (7)
          1. 1kjq picpicxrefxref
            complexed with adp, cl, edo, mg, mpo, na
            1. region a:113-318 [72618] picpiclink
            2. region b:113-318 [72621] picpiclink
          2. 1kj9 picpicxrefxref
            complexed with atp, cl, edo, mg, mpo, na
            1. region a:113-318 [72591] picpiclink
            2. region b:113-318 [72594] picpiclink
          3. 1kj8 picpicxrefxref
            complexed with atp, cl, edo, gar, mg, mpo, na
            1. region a:113-318 [72585] picpiclink
            2. region b:113-318 [72588] picpiclink
          4. 1kji picpicxrefxref
            complexed with acp, cl, edo, mg, mpo, na
            1. region a:113-318 [72603] picpiclink
            2. region b:113-318 [72606] picpiclink
          5. 1kjj picpicxrefxref
            complexed with ags, cl, mg, mpo, na
            1. region a:113-318 [72609] picpiclink
            2. region b:113-318 [72612] picpiclink
          6. 1ez1 picpicxrefxref
            complexed with act, anp, gar, mg, mpo, na
            1. region a:113-318 [41500] picpiclink
            2. region b:113-318 [41501] picpiclink
          7. 1eyz picpicxrefxref
            complexed with anp, cl, mg, mpo, na
            1. region a:113-318 [41498] picpiclink
            2. region b:113-318 [41499] picpiclink
      5. Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains [56076]
        duplication: CPS large subunit contains two full BC-like lobes: carboxyphosphate and carbamoyl phosphate domains
        1. Escherichia coli [TaxId: 562] [56077] (10)
          SQ P00968
          1. 1a9x picpicxrefxrefxrefxrefxref
            complexed with adp, cl, k, mn, net, orn, po4; mutant
            1. region a:128-402 [41502] picpiclink
            2. region a:677-935 [41503] picpiclink
            3. region c:2128-2402 [41504] picpiclink
            4. region c:2677-2935 [41505] picpiclink
            5. region e:4128-4402 [41506] picpiclink
            6. region e:4677-4935 [41507] picpiclink
            7. region g:6128-6402 [41508] picpiclink
            8. region g:6677-6935 [41509] picpiclink
          2. 1c30 picpicxrefxrefxrefxrefxref
            1. region a:128-402 [41510] picpiclink
            2. region a:677-935 [41511] picpiclink
            3. region c:128-402 [41512] picpiclink
            4. region c:677-935 [41513] picpiclink
            5. region e:128-402 [41514] picpiclink
            6. region e:677-935 [41515] picpiclink
            7. region g:128-402 [41516] picpiclink
            8. region g:677-935 [41517] picpiclink
          3. 1cs0 picpicxrefxrefxrefxrefxref
            1. region a:128-402 [41518] picpiclink
            2. region a:677-935 [41519] picpiclink
            3. region c:128-402 [41520] picpiclink
            4. region c:677-935 [41521] picpiclink
            5. region e:128-402 [41522] picpiclink
            6. region e:677-935 [41523] picpiclink
            7. region g:128-402 [41524] picpiclink
            8. region g:677-935 [41525] picpiclink
          4. 1t36 picpicxrefxrefxrefxrefxref
            complexed with adp, cl, k, mn, net, orn, po4, u; mutant
            1. region a:128-402 [106305] picpiclink
            2. region a:677-935 [106306] picpiclink
            3. region c:128-402 [106313] picpiclink
            4. region c:677-935 [106314] picpiclink
            5. region e:128-402 [106321] picpiclink
            6. region e:677-935 [106322] picpiclink
            7. region g:128-402 [106329] picpiclink
            8. region g:677-935 [106330] picpiclink
          5. 1jdb picpicxrefxrefxrefxrefxref
            complexed with adp, cl, e4n, k, mn, orn, po4
            1. region b:128-402 [41550] picpiclink
            2. region b:677-935 [41551] picpiclink
            3. region e:128-402 [41552] picpiclink
            4. region e:677-935 [41553] picpiclink
            5. region h:128-402 [41554] picpiclink
            6. region h:677-935 [41555] picpiclink
            7. region k:128-402 [41556] picpiclink
            8. region k:677-935 [41557] picpiclink
          6. 1kee picpicxrefxrefxrefxrefxref
            complexed with 143, adp, cl, k, mn, net, orn, pi
            1. region a:128-402 [68496] picpiclink
            2. region a:677-935 [68497] picpiclink
            3. region c:128-402 [68504] picpiclink
            4. region c:677-935 [68505] picpiclink
            5. region e:128-402 [68512] picpiclink
            6. region e:677-935 [68513] picpiclink
            7. region g:128-402 [68520] picpiclink
            8. region g:677-935 [68521] picpiclink
          7. 1m6v picpicxrefxrefxrefxrefxref
            complexed with adp, cl, k, mn, net, orn, pi; mutant
            1. region a:128-402 [74540] picpiclink
            2. region a:677-935 [74541] picpiclink
            3. region c:128-402 [74548] picpiclink
            4. region c:677-935 [74549] picpiclink
            5. region e:128-402 [74556] picpiclink
            6. region e:677-935 [74557] picpiclink
            7. region g:128-402 [74564] picpiclink
            8. region g:677-935 [74565] picpiclink
          8. 1c3o picpicxrefxrefxrefxrefxref
            1. region a:128-402 [41526] picpiclink
            2. region a:677-935 [41527] picpiclink
            3. region c:128-402 [41528] picpiclink
            4. region c:677-935 [41529] picpiclink
            5. region e:128-402 [41530] picpiclink
            6. region e:677-935 [41531] picpiclink
            7. region g:128-402 [41532] picpiclink
            8. region g:677-935 [41533] picpiclink
          9. 1ce8 picpicxrefxrefxrefxrefxref
            complexed with adp, cl, imp, k, mn, net, orn, pi
            1. region a:128-402 [41534] picpiclink
            2. region a:677-935 [41535] picpiclink
            3. region c:128-402 [41536] picpiclink
            4. region c:677-935 [41537] picpiclink
            5. region e:128-402 [41538] picpiclink
            6. region e:677-935 [41539] picpiclink
            7. region g:128-402 [41540] picpiclink
            8. region g:677-935 [41541] picpiclink
          10. 1bxr picpicxrefxrefxrefxrefxref
            complexed with anp, cl, k, mn, net, orn
            1. region a:128-402 [41542] picpiclink
            2. region a:677-935 [41543] picpiclink
            3. region c:128-402 [41544] picpiclink
            4. region c:677-935 [41545] picpiclink
            5. region e:128-402 [41546] picpiclink
            6. region e:677-935 [41547] picpiclink
            7. region g:128-402 [41548] picpiclink
            8. region g:677-935 [41549] picpiclink
      6. Acetyl-CoA carboxylase, BC-M subdomain [118120]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [118121] (2)
          SQ Q00955 13-566
          1. 1w96 picpicxrefxref
            complexed with s1a
            1. region a:184-450 [114399] picpiclink
            2. region b:184-450 [114402] picpiclink
            3. region c:184-450 [114405] picpiclink
          2. 1w93 picpicxrefxref
            1. region a:184-450 [114396] picpiclink
    4. Synapsin C-terminal domain [56078] (3)
      1. Synapsin [56079]
        1. Cow (Bos taurus) [TaxId: 9913] [56080] (2)
          1. 1auv picpicxref
            1. region a:214-417 [41558] picpiclink
            2. region b:214-417 [41559] picpiclink
          2. 1aux picpicxref
            complexed with ca, sap
            1. region a:214-417 [41560] picpiclink
            2. region b:214-417 [41561] picpiclink
        2. Rat (Rattus norvegicus) [TaxId: 10116] [103285] (2)
          1. 1pk8 picpicxref
            complexed with atp, ca, egl
            1. region a:214-417 [94808] picpiclink
            2. region b:214-417 [94810] picpiclink
            3. region c:214-417 [94812] picpiclink
            4. region d:214-417 [94814] picpiclink
            5. region e:214-416 [94816] picpiclink
            6. region f:214-417 [94818] picpiclink
            7. region g:214-417 [94820] picpiclink
            8. region h:214-417 [94822] picpiclink
          2. 1px2 picpicxref
            complexed with atp, ca
            1. region a:214-417 [95274] picpiclink
            2. region b:214-417 [95276] picpiclink
      2. Synapsin II [90030]
        1. Rat (Rattus norvegicus) [TaxId: 10116] [90031] (2)
          1. 1i7n picpicxref
            1. region a:215-420 [83682] picpiclink
            2. region b:215-420 [83684] picpiclink
          2. 1i7l picpicxref
            complexed with atp
            1. region a:215-421 [83678] picpiclink
            2. region b:215-421 [83680] picpiclink
    5. Succinyl-CoA synthetase, beta-chain, N-terminal domain [56081] (2)
      1. Succinyl-CoA synthetase, beta-chain, N-terminal domain [56082]
        1. Escherichia coli [TaxId: 562] [56083] (18)
          1. 2nu7 picpicxrefxrefxrefxrefxrefxref
            automatically matched to d1cqib2
            complexed with coa, po4, so4; mutant
            1. region b:1-238 [148407] picpiclink
          2. 2nu7 picpicxrefxrefxrefxrefxrefxref
            automatically matched to d1cqib2
            complexed with coa, po4, so4; mutant
            1. region e:1-238 [148411] picpiclink
          3. 2nu8 picpicxrefxrefxrefxrefxrefxref
            automatically matched to d1cqib2
            complexed with coa, gol, po4, so4; mutant
            1. region b:1-238 [148415] picpiclink
          4. 2nu8 picpicxrefxrefxrefxrefxrefxref
            automatically matched to d1cqib2
            complexed with coa, gol, po4, so4; mutant
            1. region e:1-238 [148419] picpiclink
          5. 1jkj picpicxrefxrefxref
            complexed with coa, gol, po4, so4
            1. region b:1-238 [66803] picpiclink
            2. region e:1-238 [66807] picpiclink
          6. 2nu6 picpicxrefxrefxrefxrefxrefxref
            automatically matched to d1cqib2
            complexed with coa, so4; mutant
            1. region b:1-238 [148399] picpiclink
          7. 2nu6 picpicxrefxrefxrefxrefxrefxref
            automatically matched to d1cqib2
            complexed with coa, so4; mutant
            1. region e:1-238 [148403] picpiclink
          8. 1cqj picpicxrefxrefxref
            1. region b:1-238 [41564] picpiclink
            2. region e:1-238 [41565] picpiclink
          9. 2scu picpicxrefxrefxref
            complexed with coa, so4
            1. region b:1-238 [41562] picpiclink
            2. region e:1-238 [41563] picpiclink
          10. 2nu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1cqib2
            complexed with coa, so4; mutant
            1. region b:1-238 [148423] picpiclink
          11. 2nu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1cqib2
            complexed with coa, so4; mutant
            1. region e:1-238 [148427] picpiclink
          12. 2nu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1cqib2
            complexed with coa, so4; mutant
            1. region g:1-238 [148431] picpiclink
          13. 2nu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1cqib2
            complexed with coa, so4; mutant
            1. region i:1-238 [148435] picpiclink
          14. 1jll picpicxrefxrefxref
            complexed with coa, po4, so4; mutant
            1. region b:1-238 [66854] picpiclink
            2. region e:1-238 [66858] picpiclink
          15. 2nua picpicxrefxrefxrefxrefxrefxref
            automatically matched to d1cqib2
            complexed with coa, po4, so4; mutant
            1. region b:1-238 [148439] picpiclink
          16. 2nua picpicxrefxrefxrefxrefxrefxref
            automatically matched to d1cqib2
            complexed with coa, po4, so4; mutant
            1. region e:1-238 [148443] picpiclink
          17. 1cqi picpicxrefxrefxref
            1. region b:1-238 [41568] picpiclink
            2. region e:1-238 [41569] picpiclink
          18. 1scu picpicxrefxrefxref
            complexed with coa, phs
            1. region b:1-238 [41566] picpiclink
            2. region e:1-238 [41567] picpiclink
        2. Pig (Sus scrofa) [TaxId: 9823] [56084] (6)
          GTP-specific enzyme
          1. 1euc picpicxrefxrefxref
            complexed with po4, so4, zn; mutant
            1. region b:0-245 [41570] picpiclink
          2. 1eud picpicxrefxrefxref
            complexed with so4; mutant
            1. region b:0-245 [41571] picpiclink
          3. 2fp4 picpicxrefxrefxref
            automatically matched to d1eucb2
            complexed with gtp, k, mg
            1. region b:1-245 [133898] picpiclink
          4. 2fpp picpicxrefxrefxref
            automatically matched to d1eucb2
            complexed with cl, so4
            1. region b:1-245 [133918] picpiclink
          5. 2fpg picpicxrefxrefxref
            automatically matched to d1eucb2
            complexed with gdp, k, po4
            1. region b:1-245 [133903] picpiclink
          6. 2fpi picpicxrefxrefxref
            automatically matched to d1eucb2
            complexed with so4
            1. region b:1-245 [133907] picpiclink
    6. Pyruvate phosphate dikinase, N-terminal domain [56085] (3)
      1. Pyruvate phosphate dikinase, N-terminal domain [56086]
        the common fold is interrupted by a 4-helical subdomain (residues 112-198)
        1. Clostridium symbiosum [TaxId: 1512] [56087] (7)
          1. 1kbl picpicxrefxref
            complexed with nh4, so4
            1. region a:2-376 [68386] picpiclink
          2. 1kc7 picpicxrefxref
            complexed with mg, ppr, so4
            1. region a:2-376 [68425] picpiclink
          3. 1dik picpicxrefxref
            CASP1
            complexed with so4
            1. region a:2-376 [41572] picpiclink
          4. 1ggo picpicxrefxref
            complexed with so4; mutant
            1. region a:2-376 [41573] picpiclink
          5. 2dik picpicxrefxref
            complexed with so4; mutant
            1. region a:2-376 [41574] picpiclink
          6. 2r82 picpicxrefxref
            automatically matched to d1ggoa3
            complexed with so4; mutant
            1. region a:2-376 [151669] picpiclink
          7. 1jde picpicxrefxref
            complexed with so4; mutant
            1. region a:2-376 [66548] picpiclink
        2. Trypanosoma brucei [TaxId: 5691] [75557] (1)
          1. 1h6z picpicxrefxref
            1. region a:1-405 [70908] picpiclink
        3. Maize (Zea mays) [TaxId: 4577] [143889] (2)
          SQ P11155 74-453
          1. 1vbg picpicxrefxref
            complexed with mg, so4
            1. region a:3-382 [119953] picpiclink
          2. 1vbh picpicxrefxref
            automatically matched to 1VBG A:3-382
            complexed with mg, pep, so4
            1. region a:3-382 [119956] picpiclink
    7. Eukaryotic glutathione synthetase ATP-binding domain [56088] (2)
      circularly permuted version of prokaryotic enzyme
      1. Eukaryotic glutathione synthetase ATP-binding domain [56089]
        1. Human (Homo sapiens) [TaxId: 9606] [56090] (1)
          1. 2hgs picpicxref
            complexed with adp, gsh, mg, sul
            1. region a:3-201,a:304-474 [75997] picpiclink
        2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [82788] (2)
          1. 1m0w picpicxref
            complexed with 3gc, anp, mg, so4
            1. region a:6-210,a:324-491 [78364] picpiclink
            2. region b:1005-1210,b:1324-1491 [78366] picpiclink
          2. 1m0t picpicxref
            complexed with so4
            1. region a:5-213,a:324-491 [78356] picpiclink
            2. region b:1005-1213,b:1324-1491 [78358] picpiclink
    8. Glutathionylspermidine synthase ATP-binding domain-like [143890] (1)
      both terminal parts of Pfam 03738; GSP; overal similarity of the Pfam domain to the Eukaryotic glutathione synthetase
      1. Glutathionylspermidine synthase, synthetase domain [143891]
        1. Escherichia coli [TaxId: 562] [143892] (10)
          SQ P0AES0 201-378,497-615
          1. 2io8 picpicxrefxrefxrefxref
            automatically matched to 2IO7 A:201-378,A:497-615
            complexed with adp, cys, mg
            1. region a:201-378,a:497-615 [137551] picpiclink
          2. 2io8 picpicxrefxrefxrefxref
            automatically matched to 2IO7 A:201-378,A:497-615
            complexed with adp, cys, mg
            1. region b:201-378,b:497-615 [137554] picpiclink
          3. 2io9 picpicxrefxrefxrefxref
            automatically matched to 2IO7 A:201-378,A:497-615
            complexed with adp, gsh, mg
            1. region a:201-378,a:497-615 [137557] picpiclink
          4. 2io9 picpicxrefxrefxrefxref
            automatically matched to 2IO7 A:201-378,A:497-615
            complexed with adp, gsh, mg
            1. region b:201-378,b:497-615 [137560] picpiclink
          5. 2iob picpicxrefxrefxrefxref
            automatically matched to 2IO7 A:201-378,A:497-615
            1. region a:201-378,a:497-615 [137569] picpiclink
          6. 2iob picpicxrefxrefxrefxref
            automatically matched to 2IO7 A:201-378,A:497-615
            1. region b:201-378,b:497-615 [137572] picpiclink
          7. 2ioa picpicxrefxrefxrefxref
            automatically matched to 2IO7 A:201-378,A:497-615
            complexed with adp, gga, mg
            1. region a:201-378,a:497-615 [137563] picpiclink
          8. 2ioa picpicxrefxrefxrefxref
            automatically matched to 2IO7 A:201-378,A:497-615
            complexed with adp, gga, mg
            1. region b:201-378,b:497-615 [137566] picpiclink
          9. 2io7 picpicxrefxrefxrefxref
            complexed with anp, mg
            1. region a:201-378,a:497-615 [137545] picpiclink
          10. 2io7 picpicxrefxrefxrefxref
            automatically matched to 2IO7 A:201-378,A:497-615
            complexed with anp, mg
            1. region b:201-378,b:497-615 [137548] picpiclink
    9. PurP ATP-binding domain-like [160804] (3)
      Pfam 06973; DUF1297
      1. 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP [160805]
        1. Thermococcus kodakaraensis [TaxId: 311400] [160806] (3)
          SQ Q5JD28 98-310
          1. 2pbz picpicxrefxrefxref
            complexed with atp
            1. region a:100-312 [149372] picpiclink
          2. 2pbz picpicxrefxrefxref
            automatically matched to 2PBZ A:100-312
            complexed with atp
            1. region b:100-312 [149374] picpiclink
          3. 2pbz picpicxrefxrefxref
            automatically matched to 2PBZ A:100-312
            complexed with atp
            1. region c:100-312 [149376] picpiclink
        2. Methanocaldococcus jannaschii [TaxId: 2190] [160807] (4)
          SQ Q57600 124-361
          1. 2r7k picpicxref
            complexed with acp, amz, cl, so4
            1. region a:124-361 [151648] picpiclink
          2. 2r7l picpicxref
            automatically matched to 2R7K A:124-361
            complexed with amz, atp, cl, so4
            1. region a:124-361 [151650] picpiclink
          3. 2r7m picpicxref
            automatically matched to 2R7K A:124-361
            complexed with amp, cl, so4
            1. region a:124-361 [151652] picpiclink
          4. 2r7n picpicxref
            automatically matched to 2R7K A:124-361
            complexed with adp, cl, fai, so4
            1. region a:124-361 [151654] picpiclink
        3. Pyrococcus furiosus [TaxId: 2261] [160808] (12)
          SQ Q8U0R7 100-334
          1. 2r85 picpicxrefxref
            automatically matched to 2R84 A:100-334
            complexed with amp, cl, mpd, na
            1. region a:100-334 [151677] picpiclink
          2. 2r85 picpicxrefxref
            automatically matched to 2R84 A:100-334
            complexed with amp, cl, mpd, na
            1. region b:100-334 [151679] picpiclink
          3. 2r84 picpicxrefxref
            complexed with amp, amz, cl, mpd, na
            1. region a:100-334 [151673] picpiclink
          4. 2r84 picpicxrefxref
            automatically matched to 2R84 A:100-334
            complexed with amp, amz, cl, mpd, na
            1. region b:100-334 [151675] picpiclink
          5. 2r87 picpicxrefxrefxrefxrefxrefxref
            automatically matched to 2R84 A:100-334
            complexed with adp, po4
            1. region a:100-334 [151685] picpiclink
          6. 2r87 picpicxrefxrefxrefxrefxrefxref
            automatically matched to 2R84 A:100-334
            complexed with adp, po4
            1. region b:100-334 [151687] picpiclink
          7. 2r87 picpicxrefxrefxrefxrefxrefxref
            automatically matched to 2R84 A:100-334
            complexed with adp, po4
            1. region c:100-334 [151689] picpiclink
          8. 2r87 picpicxrefxrefxrefxrefxrefxref
            automatically matched to 2R84 A:100-334
            complexed with adp, po4
            1. region d:100-334 [151691] picpiclink
          9. 2r87 picpicxrefxrefxrefxrefxrefxref
            automatically matched to 2R84 A:100-334
            complexed with adp, po4
            1. region e:100-334 [151693] picpiclink
          10. 2r87 picpicxrefxrefxrefxrefxrefxref
            automatically matched to 2R84 A:100-334
            complexed with adp, po4
            1. region f:100-334 [151695] picpiclink
          11. 2r86 picpicxrefxref
            automatically matched to 2R84 A:100-334
            complexed with atp, mpd, na, po4
            1. region a:100-334 [151681] picpiclink
          12. 2r86 picpicxrefxref
            automatically matched to 2R84 A:100-334
            complexed with atp, mpd, na, po4
            1. region b:100-334 [151683] picpiclink
  2. DNA ligase/mRNA capping enzyme, catalytic domain [56091] (4)
    has a circularly permuted topology
    link to SUPERFAMILY database - Superfamily
    1. ATP-dependent DNA ligase catalytic domain [56092] (3)
      1. ATP-dependent DNA ligase, N-terminal domain [56093]
        1. Bacteriophage T7 [TaxId: 10760] [56094] (1)
          1. 1a0i picpicxref
            complexed with atp; mutant
            1. region a:2-240 [41577] picpiclink
        2. Chlorella virus PBCV-1 [TaxId: 10506] [56095] (7)
          1. 1fvi picpicxref
            complexed with amp, so4; mutant
            1. region a:2-189 [41578] picpiclink
          2. 2q2t picpicxref
            automatically matched to d1p8la2
            complexed with amp, omc
            1. region a:2-189 [150015] picpiclink
          3. 2q2u picpicxrefxrefxrefxref
            automatically matched to d1p8la2
            complexed with omc
            1. region a:2-189 [150017] picpiclink
          4. 2q2u picpicxrefxrefxrefxref
            automatically matched to d1p8la2
            complexed with omc
            1. region b:2-189 [150019] picpiclink
          5. 2q2u picpicxrefxrefxrefxref
            automatically matched to d1p8la2
            complexed with omc
            1. region c:2-189 [150021] picpiclink
          6. 2q2u picpicxrefxrefxrefxref
            automatically matched to d1p8la2
            complexed with omc
            1. region d:2-189 [150023] picpiclink
          7. 1p8l picpicxref
            complexed with amp
            1. region a:2-189 [94364] picpiclink
      2. DNA ligase I (LIG1) [118122]
        1. Human (Homo sapiens) [TaxId: 9606] [118123] (1)
          SQ P18858 262-901
          1. 1x9n picpicxrefxref
            complexed with amp, doc
            1. region a:534-753 [115004] picpiclink
    2. Adenylation domain of NAD+-dependent DNA ligase [56096] (3)
      1. Adenylation domain of NAD+-dependent DNA ligase [56097]
        contains additional, N-terminal all-alpha subdomain
        1. Bacillus stearothermophilus [TaxId: 1422] [56098] (1)
          1. 1b04 picpic
            1. chain a [41579] picpiclink
            2. chain b [41580] picpiclink
        2. Thermus filiformis [TaxId: 276] [56099] (2)
          1. 1dgs picpicxrefxref
            complexed with amp, zn
            1. region a:1-314 [41581] picpiclink
            2. region b:2001-2314 [41582] picpiclink
          2. 1v9p picpicxrefxref
            complexed with amp, zn
            1. region a:1-317 [100546] picpiclink
            2. region b:2001-2317 [100549] picpiclink
        3. Enterococcus faecalis [TaxId: 1351] [118124] (2)
          SQ Q837V6 5-317
          1. 1ta8 picpic
            complexed with gol, nmn, so4
            1. chain a [112375] picpiclink
          2. 1tae picpic
            complexed with na, nad, so4
            1. chain a [112376] picpiclink
            2. chain b [112377] picpiclink
            3. chain c [112378] picpiclink
            4. chain d [112379] picpiclink
    3. mRNA capping enzyme [56100] (2)
      1. RNA guanylyltransferase (mRNA capping enzyme), N-terminal domain [56101]
        1. Chlorella virus PBCV-1 [TaxId: 10506] [56102] (3)
          1. 1ckm picpicxref
            complexed with gtp
            1. region a:11-238 [41585] picpiclink
            2. region b:11-238 [41586] picpiclink
          2. 1ckn picpicxref
            complexed with gpl, gtp, mn, so4
            1. region a:11-238 [41587] picpiclink
            2. region b:11-238 [41588] picpiclink
          3. 1cko picpicxref
            complexed with gp3, zn
            1. region a:11-238 [41589] picpiclink
      2. mRNA capping enzyme alpha subunit [90032]
        1. Yeast (Candida albicans) [TaxId: 5476] [90033] (1)
          1. 1p16 picpicxref
            complexed with the phosphorylated carboxyl-terminal peptide of RNA polymerase II, chains C and D
            complexed with g, gtp, mse, po4, sep; mutant
            1. region a:1-245 [87662] picpiclink
            2. region b:1-245 [87664] picpiclink
    4. RNA ligase [103286] (2)
      1. RNA ligase 2, N-terminal domain [103287]
        1. Bacteriophage T4 [TaxId: 10665] [103288] (1)
          1. 1s68 picpic
            complexed with amp
            1. chain a [98591] picpiclink
      2. RNA editing ligase MP52 [118125]
        1. Trypanosoma brucei [TaxId: 5691] [118126] (1)
          SQ P82863 52-316
          1. 1xdn picpic
            complexed with atp, mg
            1. chain a [115168] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk