Structural Classification of Proteins
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Superfamily: CAD & PB1 domains

contain extra helix; similar heterodimerization modes; possibly related to the ubiquitin-like superfamily
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: beta-Grasp (ubiquitin-like) [54235]
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. Superfamily: CAD & PB1 domains [54277]
    contain extra helix; similar heterodimerization modes; possibly related to the ubiquitin-like superfamily
    link to SUPERFAMILY database - Superfamily

Families:

  1. CAD domain [54278] (5)
    1. Cell death-inducing effector B (CIDE-B), N-terminal domain [54279]
      1. Human (Homo sapiens) [TaxId: 9606] [54280] (1)
        1. 1d4b picpic
          1. chain a [37638] picpiclink
    2. Caspase-activated DNase (CAD), DFF40, N-terminal domain [54281]
      1. Mouse (Mus musculus) [TaxId: 10090] [54282] (2)
        1. 1c9f picpic
          1. chain a [37639] picpiclink
        2. 1f2r picpicxref
          1. chain c [37640] picpiclink
      2. Human (Homo sapiens) [TaxId: 9606] [64223] (1)
        1. 1ibx picpicxref
          mutant
          1. chain a [62231] picpiclink
    3. Inhibitor of caspase-activated DNase (ICAD), DFF45, N-terminal domain [54283]
      1. Mouse (Mus musculus) [TaxId: 10090] [54284] (1)
        1. 1f2r picpicxref
          1. chain i [37641] picpiclink
      2. Human (Homo sapiens) [TaxId: 9606] [64224] (1)
        1. 1ibx picpicxref
          chimera with B1 domain of streptococcal protein G (disordered)
          mutant
          1. chain b [62232] picpiclink
  2. PB1 domain [64225] (11)
    Pfam 00564
    forms heterodimers, although not all PB1 domain pairs associate.
    1. Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) [102790]
      1. Human (Homo sapiens) [TaxId: 9606] [102791] (1)
        1. 1oey picpicxref
          mutant
          1. chain a [92800] picpiclink
          2. chain b [92801] picpiclink
          3. chain c [92802] picpiclink
          4. chain d [92803] picpiclink
    2. Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) [102792]
      1. Human (Homo sapiens) [TaxId: 9606] [102793] (1)
        1. 1oey picpicxref
          mutant
          1. chain j [92804] picpiclink
          2. chain k [92805] picpiclink
          3. chain l [92806] picpiclink
          4. chain m [92807] picpiclink
    3. Bud emergence mediator Bemp1 [64226]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64227] (2)
        1. 1ip9 picpic
          1. chain a [62638] picpiclink
        2. 1ipg picpic
          1. chain a [62639] picpiclink
    4. Cell division control protein 24, CDC24, C-terminal domain [89834]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [89835] (3)
        1. 1pqs picpic
          cloning artifact: lacks the N-terminal strand of the common fold and has a rearranged beta-sheet
          1. chain a [88277] picpiclink
        2. 1q1o picpic
          1. chain a [95596] picpiclink
        3. 1tz1 picpic
          automatically matched to d1pqsa_
          1. region a:780-854 [119391] picpiclink
    5. Protein kinase C, iota type [110804]
      1. Human (Homo sapiens) [TaxId: 9606] [110805] (2)
        SQ P41743 16-98 ! SQ P41743 16-99
        1. 1wmh picpicxref
          1. chain a [114744] picpiclink
        2. 1vd2 picpic
          1. chain a [108517] picpiclink
    6. Mitogen activated protein kinase kinase 5, Map2k5 [117827]
      1. Mouse (Mus musculus) [TaxId: 10090] [117828] (1)
        SQ Q9D222 7-107
        1. 1wi0 picpic
          Structural genomics target
          1. chain a [114657] picpiclink
      2. Human (Homo sapiens) [TaxId: 9606] [142975] (2)
        SQ Q13163 4-108
        1. 2npt picpicxrefxref
          1. region a:4-108 [138448] picpiclink
        2. 2npt picpicxrefxref
          automatically matched to 2NPT A:4-108
          1. region c:4-108 [138450] picpiclink
    7. Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) [117829]
      1. Human (Homo sapiens) [TaxId: 9606] [117830] (2)
        SQ Q14596 1-85
        1. 2bkf picpic
          complexed with gol
          1. region a:1-85 [128699] picpiclink
        2. 1wj6 picpic
          Structural genomics target
          1. chain a [114693] picpiclink
    8. Partitioning defective-6 homolog alpha, PAR-6 alpha [117831]
      1. Human (Homo sapiens) [TaxId: 9606] [117832] (1)
        SQ Q9NPB6 14-95
        1. 1wmh picpicxref
          1. chain b [114745] picpiclink
    9. Mitogen-activated protein kinase kinase kinase 2, MEKK 2 [142976]
      1. Human (Homo sapiens) [TaxId: 9606] [142977] (3)
        SQ Q9Y2U5 42-123! SQ Q9Y2U5 43-132
        1. 2npt picpicxrefxref
          1. region b:42-123 [138449] picpiclink
        2. 2npt picpicxrefxref
          automatically matched to 2NPT B:42-123
          1. region d:42-122 [138451] picpiclink
        3. 2cu1 picpic
          mutant
          1. region a:8-97 [130802] picpiclink
    10. Mitogen-activated protein kinase kinase kinase 3, MEKK 3 [142978]
      1. Human (Homo sapiens) [TaxId: 9606] [142979] (2)
        SQ Q99759 42-123! SQ Q99759 43-122
        1. 2c60 picpic
          complexed with ca, gol
          1. region a:43-122 [129966] picpiclink
        2. 2o2v picpic
          1. region b:42-123 [138893] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk