Structural Classification of Proteins
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Fold: DNase I-like

contains beta-sandwich; duplication of alpha+beta motif

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: DNase I-like [56218]
    contains beta-sandwich; duplication of alpha+beta motif

Superfamilies:

  1. DNase I-like [56219] (3)
    link to SUPERFAMILY database - Superfamily
    1. DNase I-like [56220] (8)
      1. DNA-repair enzyme exonuclease III [56221]
        1. Escherichia coli [TaxId: 562] [56222] (1)
          1. 1ako picpic
            1. chain a [41779] picpiclink
      2. DNA repair endonuclease Hap1 [56223]
        Major apurinic/apyrimidinic endonuclease APE1
        1. Human (Homo sapiens) [TaxId: 9606] [56224] (9)
          1. 1hd7 picpic
            complexed with pb
            1. chain a [41780] picpiclink
          2. 1bix picpic
            complexed with pt, sm
            1. chain a [41781] picpiclink
          3. 1e9n picpic
            complexed with pb
            1. chain a [41782] picpiclink
            2. chain b [41783] picpiclink
          4. 1dew picpic
            1. chain a [41786] picpiclink
            2. chain b [41787] picpiclink
          5. 1de9 picpic
            1. chain a [41784] picpiclink
            2. chain b [41785] picpiclink
          6. 2isi picpic
            automatically matched to d1e9na_
            complexed with mg, po4
            1. region a:43-318 [137603] picpiclink
          7. 2isi picpic
            automatically matched to d1e9na_
            complexed with mg, po4
            1. region b:43-318 [137604] picpiclink
          8. 2isi picpic
            automatically matched to d1e9na_
            complexed with mg, po4
            1. region c:43-318 [137605] picpiclink
          9. 1de8 picpic
            1. chain a [41788] picpiclink
            2. chain b [41789] picpiclink
      3. Deoxyribonuclease I [56225]
        1. Cow (Bos taurus) [TaxId: 9913] [56226] (11)
          1. 2a40 picpicxrefxrefxrefxref
            automatically matched to d1dnka_
            complexed with atp, ca, gol, mg, nag
            1. region b:1-260 [126139] picpiclink
          2. 2a40 picpicxrefxrefxrefxref
            automatically matched to d1dnka_
            complexed with atp, ca, gol, mg, nag
            1. region e:1-260 [126142] picpiclink
          3. 2a42 picpicxrefxref
            automatically matched to d1dnka_
            complexed with atp, ca, gol, mg, nag
            1. region b:1-260 [126148] picpiclink
          4. 2dnj picpic
            protein/DNA complex; complexed with nag
            1. chain a [41790] picpiclink
          5. 2a3z picpicxrefxref
            automatically matched to d1dnka_
            complexed with atp, ca, fmt, gol, mg, nag
            1. region b:1-260 [126136] picpiclink
          6. 3dni picpic
            complexed with ca, man, nag
            1. chain a [41791] picpiclink
          7. 1dnk picpic
            protein/DNA complex; complexed with nag
            1. chain a [41792] picpiclink
          8. 2a41 picpicxrefxref
            automatically matched to d1dnka_
            complexed with atp, bma, ca, fmt, mg, nag
            1. region b:1-260 [126145] picpiclink
          9. 2d1k picpicxrefxref
            automatically matched to d1dnka_
            complexed with atp, bma, ca, mg, nag
            1. region b:1-260 [131131] picpiclink
          10. 1atn picpicxref
            complexed with atp, ca, man, me, nag
            1. chain d [41793] picpiclink
          11. 3cjc picpicxref
            automatically matched to d1dnka_
            complexed with atp, ca, nag, so4
            1. region d:1-260 [156698] picpiclink
      4. Endonuclease domain of LINE-1 reverse transcriptase homolog [111211]
        1. Human (Homo sapiens) [TaxId: 9606] [111212] (1)
          SQ P08547 2-237
          1. 1vyb picpic
            complexed with gol, so3, so4
            1. chain a [108897] picpiclink
            2. chain b [108898] picpiclink
      5. Cytolethal distending toxin subunit B [111213]
        1. Haemophilus ducreyi [TaxId: 730] [111214] (1)
          SQ O06523 23-283
          1. 1sr4 picpicxrefxref
            complexed with br
            1. chain b [105949] picpiclink
        2. Actinobacillus actinomycetemcomitans [TaxId: 714] [143900] (2)
          SQ Q7DK12 23-283
          1. 2f2f picpicxrefxrefxrefxref
            1. region b:23-283 [132811] picpiclink
          2. 2f2f picpicxrefxrefxrefxref
            automatically matched to 2F2F B:23-283
            1. region e:23-283 [132814] picpiclink
        3. Escherichia coli [TaxId: 562] [143901] (1)
          SQ Q46669 19-269
          1. 2f1n picpic
            1. region a:1-250 [132782] picpiclink
      6. Endonuclease domain of TRAS1 retrotransposon (ORF2) [111215]
        1. Silkworm (Bombyx mori) [TaxId: 7091] [111216] (1)
          SQ Q93139 1-184
          1. 1wdu picpic
            complexed with cl, po4; mutant
            1. chain a [109286] picpiclink
            2. chain b [109287] picpiclink
    2. Inositol polyphosphate 5-phosphatase (IPP5) [64422] (2)
      1. Synaptojanin, IPP5C domain [64423]
        1. Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896] [64424] (2)
          1. 1i9z picpic
            complexed with 2ip, ca
            1. chain a [62102] picpiclink
          2. 1i9y picpic
            1. chain a [62101] picpiclink
      2. Salivary nitrophorin [103310]
        heme-binding homologue of IPP5
        1. Bedbug (Cimex lectularius) [TaxId: 79782] [103311] (5)
          SQ O7674 23-302
          1. 2imq picpic
            automatically matched to d1ntfa_
            complexed with hem
            1. region x:3-282 [147733] picpiclink
          2. 1si6 picpic
            automatically matched to d1ntfa_
            complexed with cmo, hem
            1. region x:3-282 [118968] picpiclink
          3. 1y21 picpic
            complexed with hem, nmo, trs
            1. chain a [116389] picpiclink
          4. 1yjh picpic
            automatically matched to d1ntfa_
            complexed with hem, no
            1. region a:3-282 [123420] picpiclink
          5. 1ntf picpic
            complexed with hem
            1. chain a [92104] picpiclink
    3. Sphingomyelin phosphodiesterase-like [143902] (2)
      part of Pfam 03372
      1. Sphingomyelin phosphodiesterase C [143903]
        1. Bacillus cereus [TaxId: 1396] [143904] (10)
          SQ P11889 34-332
          1. 2ddr picpic
            complexed with ca
            1. region a:7-305 [131398] picpiclink
          2. 2ddr picpic
            automatically matched to 2DDR A:7-305
            complexed with ca
            1. region b:7-305 [131399] picpiclink
          3. 2ddr picpic
            automatically matched to 2DDR A:7-305
            complexed with ca
            1. region c:8-305 [131400] picpiclink
          4. 2ddr picpic
            automatically matched to 2DDR A:7-305
            complexed with ca
            1. region d:8-305 [131401] picpiclink
          5. 2ddt picpic
            automatically matched to 2DDR A:7-305
            complexed with mes, mg, so4
            1. region a:8-305 [131406] picpiclink
          6. 2ddt picpic
            automatically matched to 2DDR A:7-305
            complexed with mes, mg, so4
            1. region b:8-305 [131407] picpiclink
          7. 2dds picpic
            automatically matched to 2DDR A:7-305
            complexed with co
            1. region a:7-305 [131402] picpiclink
          8. 2dds picpic
            automatically matched to 2DDR A:7-305
            complexed with co
            1. region b:7-305 [131403] picpiclink
          9. 2dds picpic
            automatically matched to 2DDR A:7-305
            complexed with co
            1. region c:8-305 [131404] picpiclink
          10. 2dds picpic
            automatically matched to 2DDR A:7-305
            complexed with co
            1. region d:7-305 [131405] picpiclink
        2. Listeria ivanovii [TaxId: 1638] [143905] (1)
          SQ Q9RLV9 41-333
          1. 1zwx picpic
            complexed with gol, po4
            1. region a:41-333 [125752] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk