Family: DNase I-like

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a+b) [53931]
   Mainly antiparallel beta sheets (segregated alpha and beta regions)
3. Fold: DNase I-like [56218]
   contains beta-sandwich; duplication of alpha+beta motif
4. Superfamily: DNase I-like [56219]
   uperfamily
5. Family: DNase I-like [56220]

Protein Domains:

1. DNA-repair enzyme exonuclease III [56221]
   1. Escherichia coli [TaxId: 562] [56222] (1)
      1. 1ako
         1. chain a [41779]
2. DNA repair endonuclease Hap1 [56223]
   Major apurinic/apyrimidinic endonuclease APE1
   1. Human (Homo sapiens) [TaxId: 9606] [56224] (9)
      1. 1hd7
         complexed with pb
         1. chain a [41780]
      2. 1bix
         complexed with pt, sm
         1. chain a [41781]
      3. 1e9n
         complexed with pb
         1. chain a [41782]
         2. chain b [41783]
      4. 1dew
         1. chain a [41786]
         2. chain b [41787]
      5. 1de9
         1. chain a [41784]
         2. chain b [41785]
      6. 2isi
         automatically matched to d1e9na_
         complexed with mg, po4
         1. region a:43-318 [137603]
      7. 2isi
         automatically matched to d1e9na_
         complexed with mg, po4
         1. region b:43-318 [137604]
      8. 2isi
         automatically matched to d1e9na_
         complexed with mg, po4
         1. region c:43-318 [137605]
      9. 1de8
         1. chain a [41788]
         2. chain b [41789]
3. Deoxyribonuclease I [56225]
   1. Cow (Bos taurus) [TaxId: 9913] [56226] (11)
      1. 2a40
         automatically matched to d1dnka_
         complexed with atp, ca, gol, mg, nag
         1. region b:1-260 [126139]
      2. 2a40
         automatically matched to d1dnka_
         complexed with atp, ca, gol, mg, nag
         1. region e:1-260 [126142]
      3. 2a42
         automatically matched to d1dnka_
         complexed with atp, ca, gol, mg, nag
         1. region b:1-260 [126148]
      4. 2dnj
         protein/DNA complex; complexed with nag
         1. chain a [41790]
      5. 2a3z
         automatically matched to d1dnka_
         complexed with atp, ca, fmt, gol, mg, nag
         1. region b:1-260 [126136]
      6. 3dni
         complexed with ca, man, nag
         1. chain a [41791]
      7. 1dnk
         protein/DNA complex; complexed with nag
         1. chain a [41792]
      8. 2a41
         automatically matched to d1dnka_
         complexed with atp, bma, ca, fmt, mg, nag
         1. region b:1-260 [126145]
      9. 2d1k
         automatically matched to d1dnka_
         complexed with atp, bma, ca, mg, nag
         1. region b:1-260 [131131]
      10. 1atn
          complexed with atp, ca, man, me, nag
          1. chain d [41793]
      11. 3cjc
          automatically matched to d1dnka_
          complexed with atp, ca, nag, so4
          1. region d:1-260 [156698]
4. Endonuclease domain of LINE-1 reverse transcriptase homolog [111211]
   1. Human (Homo sapiens) [TaxId: 9606] [111212] (1)
      SQ P08547 2-237
      1. 1vyb
         complexed with gol, so3, so4
         1. chain a [108897]
         2. chain b [108898]
5. Cytolethal distending toxin subunit B [111213]
   1. Haemophilus ducreyi [TaxId: 730] [111214] (1)
      SQ O06523 23-283
      1. 1sr4
         complexed with br
         1. chain b [105949]
   2. Actinobacillus actinomycetemcomitans [TaxId: 714] [143900] (2)
      SQ Q7DK12 23-283
      1. 2f2f
         1. region b:23-283 [132811]
      2. 2f2f
         automatically matched to 2F2F B:23-283
         1. region e:23-283 [132814]
   3. Escherichia coli [TaxId: 562] [143901] (1)
      SQ Q46669 19-269
      1. 2f1n
         1. region a:1-250 [132782]
6. Endonuclease domain of TRAS1 retrotransposon (ORF2) [111215]
   1. Silkworm (Bombyx mori) [TaxId: 7091] [111216] (1)
      SQ Q93139 1-184
      1. 1wdu
         complexed with cl, po4; mutant
         1. chain a [109286]
         2. chain b [109287]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk