Structural Classification of Proteins
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Fold: Metallo-hydrolase/oxidoreductase

duplication of beta(4)-alpha-beta-alpha motif; 4 layers a/b/b/a; mixed beta-sheets

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Metallo-hydrolase/oxidoreductase [56280]
    duplication of beta(4)-alpha-beta-alpha motif; 4 layers a/b/b/a; mixed beta-sheets

Superfamilies:

  1. Metallo-hydrolase/oxidoreductase [56281] (14)
    link to SUPERFAMILY database - Superfamily
    1. Zn metallo-beta-lactamase [56282] (10)
      1. Zn metallo-beta-lactamase [56283]
        1. Bacillus cereus [TaxId: 1396] [56284] (7)
          SQ P04190 31-257
          1. 1mqo picpic
            complexed with cd, cit
            1. chain a [103846] picpiclink
          2. 2bc2 picpic
            complexed with so4, zn
            1. chain a [42031] picpiclink
            2. chain b [42032] picpiclink
          3. 1bc2 picpic
            complexed with so4, zn
            1. chain a [42034] picpiclink
            2. chain b [42035] picpiclink
          4. 3bc2 picpic
            complexed with zn
            1. chain a [42033] picpiclink
          5. 1dxk picpic
            complexed with bct, zn; mutant
            1. chain a [42036] picpiclink
          6. 1bvt picpic
            complexed with bct, zn
            1. chain a [42037] picpiclink
          7. 1bmc picpic
            complexed with zn
            1. chain a [42038] picpiclink
        2. Bacteroides fragilis [TaxId: 817] [56285] (9)
          1. 1znb picpic
            complexed with na, zn
            1. chain a [42039] picpiclink
            2. chain b [42040] picpiclink
          2. 1a7t picpic
            complexed with mes, na, zn; mutant
            1. chain a [42041] picpiclink
            2. chain b [42042] picpiclink
          3. 2bmi picpic
            complexed with na, zn
            1. chain a [42043] picpiclink
            2. chain b [42044] picpiclink
          4. 2znb picpic
            complexed with cd, na
            1. chain a [42045] picpiclink
            2. chain b [42046] picpiclink
          5. 1hlk picpic
            complexed with 113, na, zn
            1. chain a [65848] picpiclink
            2. chain b [65849] picpiclink
          6. 1kr3 picpic
            complexed with 113, na, zn
            1. chain a [77510] picpiclink
            2. chain b [77511] picpiclink
          7. 4znb picpic
            complexed with na, zn; mutant
            1. chain a [42047] picpiclink
            2. chain b [42048] picpiclink
          8. 3znb picpic
            complexed with hg, na, zn
            1. chain a [42049] picpiclink
            2. chain b [42050] picpiclink
          9. 1a8t picpic
            complexed with 061, zn; mutant
            1. chain a [42051] picpiclink
            2. chain b [42052] picpiclink
        3. Xanthomonas maltophilia [TaxId: 40324] [56286] (20)
          1. 2aio picpic
            automatically matched to d1smla_
            complexed with mx1, so4, zn
            1. region a:23-311 [126829] picpiclink
          2. 2hb9 picpic
            automatically matched to d1smla_
            complexed with l13, so4, zn
            1. region a:24-317 [136309] picpiclink
          3. 2fu8 picpic
            automatically matched to d1smla_
            complexed with gol, mco, so4, zn
            1. region a:24-317 [134110] picpiclink
          4. 2fu8 picpic
            automatically matched to d1smla_
            complexed with gol, mco, so4, zn
            1. region b:24-317 [134111] picpiclink
          5. 2fu9 picpic
            automatically matched to d1smla_
            complexed with gol, mp2, so4, zn
            1. region a:24-317 [134112] picpiclink
          6. 2fu9 picpic
            automatically matched to d1smla_
            complexed with gol, mp2, so4, zn
            1. region b:24-317 [134113] picpiclink
          7. 2fm6 picpic
            automatically matched to d1smla_
            complexed with gol, so4, zn
            1. region a:24-317 [133765] picpiclink
          8. 2fm6 picpic
            automatically matched to d1smla_
            complexed with gol, so4, zn
            1. region b:24-317 [133766] picpiclink
          9. 2h6a picpic
            automatically matched to d1smla_
            complexed with so4, zn
            1. region a:24-317 [136183] picpiclink
          10. 2h6a picpic
            automatically matched to d1smla_
            complexed with so4, zn
            1. region b:24-317 [136184] picpiclink
          11. 1sml picpic
            complexed with zn
            1. chain a [42053] picpiclink
          12. 2fu7 picpic
            automatically matched to d1smla_
            complexed with cu, gol, phn, so4
            1. region a:24-317 [134108] picpiclink
          13. 2fu7 picpic
            automatically matched to d1smla_
            complexed with cu, gol, phn, so4
            1. region b:24-317 [134109] picpiclink
          14. 2gfj picpic
            automatically matched to d1smla_
            complexed with sul, vi, zn
            1. region a:24-317 [135097] picpiclink
          15. 2gfj picpic
            automatically matched to d1smla_
            complexed with sul, vi, zn
            1. region b:24-317 [135098] picpiclink
          16. 2gfk picpic
            automatically matched to d1smla_
            complexed with peg, sul, vii, zn
            1. region a:24-317 [135099] picpiclink
          17. 2gfk picpic
            automatically matched to d1smla_
            complexed with peg, sul, vii, zn
            1. region b:24-317 [135100] picpiclink
          18. 2fu6 picpic
            automatically matched to d1smla_
            complexed with gol, so4
            1. region a:24-317 [134106] picpiclink
          19. 2fu6 picpic
            automatically matched to d1smla_
            complexed with gol, so4
            1. region b:24-317 [134107] picpiclink
          20. 2qdt picpic
            automatically matched to d1smla_
            complexed with i38, so4, zn
            1. region a:2-267 [150673] picpiclink
        4. Pseudomonas aeruginosa, IMP-1 [TaxId: 287] [56287] (8)
          1. 1jjt picpic
            complexed with act, bds, zn
            1. chain a [63139] picpiclink
            2. chain b [63140] picpiclink
          2. 1jje picpic
            complexed with act, bys, zn
            1. chain a [63117] picpiclink
            2. chain b [63118] picpiclink
          3. 1dd6 picpic
            complexed with mci, so4, zn
            1. chain a [42054] picpiclink
            2. chain b [42055] picpiclink
          4. 2doo picpic
            automatically matched to d1jjeb_
            complexed with c4h, zn
            1. region a:4-219 [131605] picpiclink
          5. 2doo picpic
            automatically matched to d1jjeb_
            complexed with c4h, zn
            1. region b:4-219 [131606] picpiclink
          6. 1vgn picpic
            automatically matched to d1jjeb_
            complexed with acy, ops, zn
            1. region a:4-220 [120062] picpiclink
          7. 1vgn picpic
            automatically matched to d1jjeb_
            complexed with acy, ops, zn
            1. region b:4-220 [120063] picpiclink
          8. 1ddk picpic
            complexed with acy, zn
            1. chain a [42056] picpiclink
        5. Pseudomonas aeruginosa, VIM-2 [TaxId: 287] [103316] (2)
          1. 1ko3 picpic
            complexed with act, cl, oh, zn
            1. chain a [90974] picpiclink
          2. 1ko2 picpic
            complexed with act, zn
            1. chain a [90973] picpiclink
        6. Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464] [82802] (3)
          1. 1k07 picpic
            complexed with act, gol, so4, zn
            1. chain a [77218] picpiclink
            2. chain b [77219] picpiclink
          2. 1jt1 picpic
            complexed with cl, gol, mco, so4, zn
            1. chain a [77168] picpiclink
          3. 1l9y picpic
            complexed with cl, gol, so4, zn; mutant
            1. chain a [84574] picpiclink
            2. chain b [84575] picpiclink
        7. Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238] [90049] (1)
          1. 1m2x picpic
            complexed with gol, mco, na, zn
            1. chain a [84764] picpiclink
            2. chain b [84765] picpiclink
            3. chain c [84766] picpiclink
            4. chain d [84767] picpiclink
        8. Aeromonas hydrophila, CphA [TaxId: 644] [118144] (5)
          SQ P26918 28-252
          1. 1x8h picpic
            complexed with co3, gol, sul, zn; mutant
            1. chain a [114961] picpiclink
          2. 2qds picpic
            automatically matched to d1x8ga_
            complexed with gol, mco, so4, zn
            1. region a:41-305 [150672] picpiclink
          3. 1x8g picpic
            complexed with co3, sul, zn
            1. chain a [114960] picpiclink
          4. 2gkl picpic
            automatically matched to d1x8ga_
            complexed with gol, pd2, zn
            1. region a:41-305 [135333] picpiclink
          5. 1x8i picpic
            complexed with bmh, gol, sul, zn; mutant
            1. chain a [114962] picpiclink
        9. Bradyrhizobium japonicum [TaxId: 375] [160849] (2)
          SQ Q89GW5 29-292
          1. 2gmn picpic
            complexed with zn
            1. region a:29-292 [147132] picpiclink
          2. 2gmn picpic
            automatically matched to 2GMN A:29-292
            complexed with zn
            1. region b:29-292 [147133] picpiclink
        10. Pseudomonas putida [TaxId: 303] [160850] (2)
          1. 2yz3 picpic
            automatically matched to d1ko2a_
            complexed with m5p, so4, zn
            1. region a:12-236 [153835] picpiclink
          2. 2yz3 picpic
            automatically matched to d1ko2a_
            complexed with m5p, so4, zn
            1. region b:12-236 [153836] picpiclink
    2. Hypothetical protein TM0207 [103317] (1)
      1. Hypothetical protein TM0207 [103318]
        1. Thermotoga maritima [TaxId: 2336] [103319] (1)
          1. 1vjn picpic
            structural genomics
            1. chain a [100825] picpiclink
            2. chain b [100826] picpiclink
    3. Glyoxalase II (hydroxyacylglutathione hydrolase) [56288] (3)
      1. Glyoxalase II (hydroxyacylglutathione hydrolase) [56289]
        1. Human (Homo sapiens) [TaxId: 9606] [56290] (2)
          1. 1qh5 picpic
            complexed with gbp, gtt, zn
            1. chain a [42057] picpiclink
            2. chain b [42058] picpiclink
          2. 1qh3 picpic
            complexed with act, cac, cl, mn, zn
            1. chain a [42059] picpiclink
            2. chain b [42060] picpiclink
        2. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [118145] (3)
          SQ Q9SID3
          1. 1xm8 picpic
            Structural genomics target
            complexed with acy, fe, peg, zn
            1. chain a [115475] picpiclink
            2. chain b [115476] picpiclink
          2. 2q42 picpic
            automatically matched to d1xm8a_
            complexed with acy, fe, peg, zn
            1. region a:1-254 [139819] picpiclink
          3. 2q42 picpic
            automatically matched to d1xm8a_
            complexed with acy, fe, peg, zn
            1. region b:1-254 [139820] picpiclink
        3. Salmonella typhimurium [TaxId: 90371] [160851] (1)
          SQ Q8ZRM2 1-251
          1. 2qed picpic
            complexed with edo, fe
            1. region a:1-251 [150676] picpiclink
    4. ROO N-terminal domain-like [56291] (3)
      1. Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain [56292]
        1. Desulfovibrio gigas [TaxId: 879] [56293] (1)
          1. 1e5d picpicxref
            complexed with feo, fmn, oxy
            1. region a:2-250 [42061] picpiclink
            2. region b:2-250 [42062] picpiclink
      2. ROO-like flavoprotein TM0755, N-terminal domain [111225]
        1. Thermotoga maritima [TaxId: 2336] [111226] (1)
          SQ Q9WZL4 #
          1. 1vme picpicxref
            Structural genomics target
            complexed with cl, edo, feo
            1. region a:1-250 [108894] picpiclink
            2. region b:1-250 [108896] picpiclink
      3. Nitric oxide reductase N-terminal domain [143914]
        1. Moorella thermoacetica [TaxId: 1525] [143915] (12)
          SQ Q9FDN7 2-250
          1. 1ycg picpicxrefxrefxrefxref
            automatically matched to 1YCF A:2-250
            complexed with edo, feo, fmn, zn
            1. region a:2-250 [122950] picpiclink
          2. 1ycg picpicxrefxrefxrefxref
            automatically matched to 1YCF A:2-250
            complexed with edo, feo, fmn, zn
            1. region b:2-250 [122952] picpiclink
          3. 1ycg picpicxrefxrefxrefxref
            automatically matched to 1YCF A:2-250
            complexed with edo, feo, fmn, zn
            1. region c:2-250 [122954] picpiclink
          4. 1ycg picpicxrefxrefxrefxref
            automatically matched to 1YCF A:2-250
            complexed with edo, feo, fmn, zn
            1. region d:2-250 [122956] picpiclink
          5. 1ycf picpicxrefxrefxrefxref
            complexed with feo, fmn, oxy, zn
            1. region a:2-250 [122942] picpiclink
          6. 1ycf picpicxrefxrefxrefxref
            automatically matched to 1YCF A:2-250
            complexed with feo, fmn, oxy, zn
            1. region b:2-250 [122944] picpiclink
          7. 1ycf picpicxrefxrefxrefxref
            automatically matched to 1YCF A:2-250
            complexed with feo, fmn, oxy, zn
            1. region c:2-250 [122946] picpiclink
          8. 1ycf picpicxrefxrefxrefxref
            automatically matched to 1YCF A:2-250
            complexed with feo, fmn, oxy, zn
            1. region d:2-250 [122948] picpiclink
          9. 1ych picpicxrefxrefxrefxref
            automatically matched to 1YCF A:2-250
            complexed with feo, fmn, zn
            1. region a:2-250 [122958] picpiclink
          10. 1ych picpicxrefxrefxrefxref
            automatically matched to 1YCF A:2-250
            complexed with feo, fmn, zn
            1. region b:2-250 [122960] picpiclink
          11. 1ych picpicxrefxrefxrefxref
            automatically matched to 1YCF A:2-250
            complexed with feo, fmn, zn
            1. region c:2-250 [122962] picpiclink
          12. 1ych picpicxrefxrefxrefxref
            automatically matched to 1YCF A:2-250
            complexed with feo, fmn, zn
            1. region d:2-250 [122964] picpiclink
    5. Methyl parathion hydrolase [111227] (1)
      1. Methyl parathion hydrolase [111228]
        1. Pseudomonas sp. WBC-3 [TaxId: 165468] [111229] (1)
          SQ Q841S6 Q693X1 Q93SP1
          1. 1p9e picpic
            complexed with cd, k, na, zn
            1. chain a [104088] picpiclink
            2. chain b [104089] picpiclink
    6. Coenzyme PQQ synthesis protein B, PqqB [118146] (1)
      1. Coenzyme PQQ synthesis protein B, PqqB [118147]
        1. Pseudomonas putida [TaxId: 303] [118148] (1)
          SQ Q88QV5
          1. 1xto picpic
            Structural genomics target
            complexed with zn
            1. chain a [116030] picpiclink
    7. RNase Z-like [143916] (3)
      part of Pfam 00753; tRNA 3'-endonuclease; elaborated with additional structures and insert alpha(2)-beta(2) subdomain
      1. Ribonuclease Z (RNase Z) [143917]
        1. Bacillus subtilis [TaxId: 1423] [143918] (3)
          SQ P54548 1-307
          1. 1y44 picpic
            complexed with gol, mes, po4, zn; mutant
            1. region a:1-307 [122608] picpiclink
          2. 1y44 picpic
            automatically matched to 1Y44 A:1-307
            complexed with gol, mes, po4, zn; mutant
            1. region b:1-307 [122609] picpiclink
          3. 2fk6 picpic
            complexed with gol, mes, zn; mutant
            1. region a:1-307 [133646] picpiclink
        2. Escherichia coli [TaxId: 562] [143919] (1)
          SQ P0A8V0 1-305
          1. 2cbn picpic
            complexed with zn
            1. region a:1-305 [130191] picpiclink
        3. Thermotoga maritima [TaxId: 2336] [143920] (4)
          SQ Q9WZW8 1-280
          1. 2e7y picpic
            automatically matched to d1ww1a1
            complexed with pgo, so4, zn
            1. region a:1-280 [146706] picpiclink
          2. 2e7y picpic
            automatically matched to d1ww1a1
            complexed with pgo, so4, zn
            1. region b:1-280 [146707] picpiclink
          3. 1ww1 picpic
            insert subdomain is disordered in this structure
            complexed with zn
            1. region a:1-280 [121348] picpiclink
          4. 1ww1 picpic
            automatically matched to 1WW1 A:1-280
            complexed with zn
            1. region b:1-280 [121349] picpiclink
    8. Pce catalytic domain-like [143921] (1)
      part of Pfam 00753
      1. Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain [143922]
        1. Streptococcus pneumoniae [TaxId: 1313] [143923] (3)
          SQ Q8DQ62 26-334! SQ Q8DQ62 30-334
          1. 2bib picpicxref
            complexed with btb, ca, pc, zn
            1. region a:1-308 [128582] picpiclink
          2. 1wra picpic
            complexed with ca, fe, mpd, pc
            1. region a:30-334 [121190] picpiclink
          3. 1wra picpic
            automatically matched to 1WRA A:30-334
            complexed with ca, fe, mpd, pc
            1. region b:30-334 [121191] picpiclink
    9. YhfI-like [143924] (1)
      part of Pfam 00753
      1. Hypothetical protein BA1088 (BAS1016) [143925]
        B. subtilis YhfI ortholog
        1. Bacillus anthracis [TaxId: 1392] [143926] (4)
          SQ Q81U06 1-244
          1. 1zkp picpic
            complexed with cl, na, zn
            1. region a:1-244 [125205] picpiclink
          2. 1zkp picpic
            automatically matched to 1ZKP A:1-244
            complexed with cl, na, zn
            1. region b:1-244 [125206] picpiclink
          3. 1zkp picpic
            automatically matched to 1ZKP A:1-244
            complexed with cl, na, zn
            1. region c:1-244 [125207] picpiclink
          4. 1zkp picpic
            automatically matched to 1ZKP A:1-244
            complexed with cl, na, zn
            1. region d:1-244 [125208] picpiclink
    10. beta-CASP RNA-metabolising hydrolases [143927] (4)
      contains insertion of a single helicase-like alpha/beta domain (from scop_sf 52540) but without the P-loop motif
      1. Hypothetical protein EF2904 [143928]
        1. Enterococcus faecalis [TaxId: 1351] [143929] (2)
          SQ Q82ZZ3 5-429
          1. 2az4 picpic
            complexed with zn
            1. region a:56-238 [127597] picpiclink
          2. 2az4 picpic
            automatically matched to 2AZ4 A:56-238
            complexed with zn
            1. region b:56-238 [127598] picpiclink
      2. Cleavage factor two protein 2, CFT2 [160852]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [160853] (1)
          SQ Q12102 1-422,627-717
          1. 2i7x picpic
            1. region a:1-422,a:626-717 [147560] picpiclink
      3. Putative RNA-degradation protein TTHA0252 [160854]
        1. Thermus thermophilus [TaxId: 274] [160855] (1)
          SQ Q5SLP1 1-431
          1. 2dkf picpic
            complexed with zn
            1. region a:1-431 [146536] picpiclink
      4. Cleavage and polyadenylation specificity factor subunit 3 [160856]
        1. Human (Homo sapiens) [TaxId: 9606] [160857] (1)
          SQ Q9UKF6 9-459
          1. 2i7t picpic
            complexed with so4, zn
            1. region a:9-459 [147559] picpiclink
    11. TM0894-like [143930] (1)
      part of Pfam 00753
      1. Hypothetical protein TM0894 [143931]
        1. Thermotoga maritima [TaxId: 2336] [143932] (4)
          SQ Q9WZZ6 1-207
          1. 1ztc picpic
            complexed with mpd, ni, po4
            1. region a:1-207 [125635] picpiclink
          2. 1ztc picpic
            automatically matched to 1ZTC A:1-207
            complexed with mpd, ni, po4
            1. region b:1-207 [125636] picpiclink
          3. 1ztc picpic
            automatically matched to 1ZTC A:1-207
            complexed with mpd, ni, po4
            1. region c:1-205 [125637] picpiclink
          4. 1ztc picpic
            automatically matched to 1ZTC A:1-207
            complexed with mpd, ni, po4
            1. region d:1-206 [125638] picpiclink
    12. Ava3068-like [160858] (1)
      1. Hypothetical protein Ava3068 [160859]
        1. Anabaena variabilis [TaxId: 1172] [160860] (2)
          SQ Q3M8K9 1-200
          1. 2p97 picpic
            complexed with cl, mg
            1. region a:1-200 [149328] picpiclink
          2. 2p97 picpic
            automatically matched to 2P97 A:1-200
            complexed with cl, mg
            1. region b:1-200 [149329] picpiclink
    13. Alkylsulfatase-like [160861] (1)
      subfamily of Pfam 00753; includes all-alpha linker subdomain
      1. Alkylsulfatase SdsA1 [160862]
        1. Pseudomonas aeruginosa [TaxId: 287] [160863] (4)
          SQ Q9I5I9 20-524
          1. 2cfu picpicxref
            complexed with 1db, ipa, peg, zn
            1. region a:20-524 [146387] picpiclink
          2. 2cfz picpicxref
            automatically matched to 2CFU A:20-524
            complexed with 1do, peg, zn
            1. region a:20-524 [146389] picpiclink
          3. 2cg2 picpicxref
            automatically matched to 2CFU A:20-524
            complexed with so4, zn
            1. region a:20-523 [146391] picpiclink
          4. 2cg3 picpicxref
            automatically matched to 2CFU A:20-524
            complexed with zn
            1. region a:20-524 [146393] picpiclink
    14. PqsE-like [160864] (1)
      part of Pfam 00753; extended C-terminal region with extra helices
      1. Quinolone signal response protein PqsE [160865]
        1. Pseudomonas aeruginosa [TaxId: 287] [160866] (3)
          SQ Q02IG5 1-301
          1. 2q0i picpic
            automatically matched to 2Q0J A:1-301
            complexed with bez, fe
            1. region a:1-298 [149986] picpiclink
          2. 2q0j picpic
            complexed with bez, fe
            1. region a:1-301 [149987] picpiclink
          3. 2q0j picpic
            automatically matched to 2Q0J A:1-301
            complexed with bez, fe
            1. region b:1-301 [149988] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk