Structural Classification of Proteins

Fold: Metallo-hydrolase/oxidoreductase

: duplication of beta(4)-alpha-beta-alpha motif; 4 layers a/b/b/a; mixed beta-sheets

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Metallo-hydrolase/oxidoreductase [56280]
duplication of beta(4)-alpha-beta-alpha motif; 4 layers a/b/b/a; mixed beta-sheets

Superfamilies:

Metallo-hydrolase/oxidoreductase [56281] (14)
uperfamily
1. Zn metallo-beta-lactamase [56282] (10)
  1. Zn metallo-beta-lactamase [56283]
    1. Bacillus cereus [TaxId: 1396] [56284] (7)
      SQ P04190 31-257
    2. Bacteroides fragilis [TaxId: 817] [56285] (9)
    3. Xanthomonas maltophilia [TaxId: 40324] [56286] (20)
    4. Pseudomonas aeruginosa, IMP-1 [TaxId: 287] [56287] (8)
    5. Pseudomonas aeruginosa, VIM-2 [TaxId: 287] [103316] (2)
    6. Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464] [82802] (3)
    7. Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238] [90049] (1)
    8. Aeromonas hydrophila, CphA [TaxId: 644] [118144] (5)
      SQ P26918 28-252
    9. Bradyrhizobium japonicum [TaxId: 375] [160849] (2)
      SQ Q89GW5 29-292
    10. Pseudomonas putida [TaxId: 303] [160850] (2)
2. Hypothetical protein TM0207 [103317] (1)
  1. Hypothetical protein TM0207 [103318]
    1. Thermotoga maritima [TaxId: 2336] [103319] (1)
3. Glyoxalase II (hydroxyacylglutathione hydrolase) [56288] (3)
  1. Glyoxalase II (hydroxyacylglutathione hydrolase) [56289]
    1. Human (Homo sapiens) [TaxId: 9606] [56290] (2)
    2. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [118145] (3)
      SQ Q9SID3
    3. Salmonella typhimurium [TaxId: 90371] [160851] (1)
      SQ Q8ZRM2 1-251
4. ROO N-terminal domain-like [56291] (3)
  1. Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain [56292]
    1. Desulfovibrio gigas [TaxId: 879] [56293] (1)
  2. ROO-like flavoprotein TM0755, N-terminal domain [111225]
    1. Thermotoga maritima [TaxId: 2336] [111226] (1)
      SQ Q9WZL4 #
  3. Nitric oxide reductase N-terminal domain [143914]
    1. Moorella thermoacetica [TaxId: 1525] [143915] (12)
      SQ Q9FDN7 2-250
5. Methyl parathion hydrolase [111227] (1)
  1. Methyl parathion hydrolase [111228]
    1. Pseudomonas sp. WBC-3 [TaxId: 165468] [111229] (1)
      SQ Q841S6 Q693X1 Q93SP1
6. Coenzyme PQQ synthesis protein B, PqqB [118146] (1)
  1. Coenzyme PQQ synthesis protein B, PqqB [118147]
    1. Pseudomonas putida [TaxId: 303] [118148] (1)
      SQ Q88QV5
7. RNase Z-like [143916] (3)
  part of Pfam 00753; tRNA 3'-endonuclease; elaborated with additional structures and insert alpha(2)-beta(2) subdomain
  1. Ribonuclease Z (RNase Z) [143917]
    1. Bacillus subtilis [TaxId: 1423] [143918] (3)
      SQ P54548 1-307
    2. Escherichia coli [TaxId: 562] [143919] (1)
      SQ P0A8V0 1-305
    3. Thermotoga maritima [TaxId: 2336] [143920] (4)
      SQ Q9WZW8 1-280
8. Pce catalytic domain-like [143921] (1)
  part of Pfam 00753
  1. Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain [143922]
    1. Streptococcus pneumoniae [TaxId: 1313] [143923] (3)
      SQ Q8DQ62 26-334! SQ Q8DQ62 30-334
9. YhfI-like [143924] (1)
  part of Pfam 00753
  1. Hypothetical protein BA1088 (BAS1016) [143925]
    B. subtilis YhfI ortholog
    1. Bacillus anthracis [TaxId: 1392] [143926] (4)
      SQ Q81U06 1-244
10. beta-CASP RNA-metabolising hydrolases [143927] (4)
  contains insertion of a single helicase-like alpha/beta domain (from scop_sf 52540) but without the P-loop motif
  1. Hypothetical protein EF2904 [143928]
    1. Enterococcus faecalis [TaxId: 1351] [143929] (2)
      SQ Q82ZZ3 5-429
  2. Cleavage factor two protein 2, CFT2 [160852]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [160853] (1)
      SQ Q12102 1-422,627-717
  3. Putative RNA-degradation protein TTHA0252 [160854]
    1. Thermus thermophilus [TaxId: 274] [160855] (1)
      SQ Q5SLP1 1-431
  4. Cleavage and polyadenylation specificity factor subunit 3 [160856]
    1. Human (Homo sapiens) [TaxId: 9606] [160857] (1)
      SQ Q9UKF6 9-459
11. TM0894-like [143930] (1)
  part of Pfam 00753
  1. Hypothetical protein TM0894 [143931]
    1. Thermotoga maritima [TaxId: 2336] [143932] (4)
      SQ Q9WZZ6 1-207
12. Ava3068-like [160858] (1)
  1. Hypothetical protein Ava3068 [160859]
    1. Anabaena variabilis [TaxId: 1172] [160860] (2)
      SQ Q3M8K9 1-200
13. Alkylsulfatase-like [160861] (1)
  subfamily of Pfam 00753; includes all-alpha linker subdomain
  1. Alkylsulfatase SdsA1 [160862]
    1. Pseudomonas aeruginosa [TaxId: 287] [160863] (4)
      SQ Q9I5I9 20-524
14. PqsE-like [160864] (1)
  part of Pfam 00753; extended C-terminal region with extra helices
  1. Quinolone signal response protein PqsE [160865]
    1. Pseudomonas aeruginosa [TaxId: 287] [160866] (3)
      SQ Q02IG5 1-301