Structural Classification of Proteins

Superfamily: Metallo-hydrolase/oxidoreductase

: uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Metallo-hydrolase/oxidoreductase [56280]
duplication of beta(4)-alpha-beta-alpha motif; 4 layers a/b/b/a; mixed beta-sheets
Superfamily: Metallo-hydrolase/oxidoreductase [56281]
uperfamily

Families:

Zn metallo-beta-lactamase [56282] (10)
1. Zn metallo-beta-lactamase [56283]
  1. Bacillus cereus [TaxId: 1396] [56284] (7)
    SQ P04190 31-257
    1. 1mqo
      complexed with cd, cit
      1. chain a [103846]
    2. 2bc2
      complexed with so4, zn
      1. chain a [42031]
      2. chain b [42032]
    3. 1bc2
      complexed with so4, zn
      1. chain a [42034]
      2. chain b [42035]
    4. 3bc2
      complexed with zn
      1. chain a [42033]
    5. 1dxk
      complexed with bct, zn; mutant
      1. chain a [42036]
    6. 1bvt
      complexed with bct, zn
      1. chain a [42037]
    7. 1bmc
      complexed with zn
      1. chain a [42038]
  2. Bacteroides fragilis [TaxId: 817] [56285] (9)
    1. 1znb
      complexed with na, zn
      1. chain a [42039]
      2. chain b [42040]
    2. 1a7t
      complexed with mes, na, zn; mutant
      1. chain a [42041]
      2. chain b [42042]
    3. 2bmi
      complexed with na, zn
      1. chain a [42043]
      2. chain b [42044]
    4. 2znb
      complexed with cd, na
      1. chain a [42045]
      2. chain b [42046]
    5. 1hlk
      complexed with 113, na, zn
      1. chain a [65848]
      2. chain b [65849]
    6. 1kr3
      complexed with 113, na, zn
      1. chain a [77510]
      2. chain b [77511]
    7. 4znb
      complexed with na, zn; mutant
      1. chain a [42047]
      2. chain b [42048]
    8. 3znb
      complexed with hg, na, zn
      1. chain a [42049]
      2. chain b [42050]
    9. 1a8t
      complexed with 061, zn; mutant
      1. chain a [42051]
      2. chain b [42052]
  3. Xanthomonas maltophilia [TaxId: 40324] [56286] (20)
    1. 2aio
      automatically matched to d1smla_
      complexed with mx1, so4, zn
      1. region a:23-311 [126829]
    2. 2hb9
      automatically matched to d1smla_
      complexed with l13, so4, zn
      1. region a:24-317 [136309]
    3. 2fu8
      automatically matched to d1smla_
      complexed with gol, mco, so4, zn
      1. region a:24-317 [134110]
    4. 2fu8
      automatically matched to d1smla_
      complexed with gol, mco, so4, zn
      1. region b:24-317 [134111]
    5. 2fu9
      automatically matched to d1smla_
      complexed with gol, mp2, so4, zn
      1. region a:24-317 [134112]
    6. 2fu9
      automatically matched to d1smla_
      complexed with gol, mp2, so4, zn
      1. region b:24-317 [134113]
    7. 2fm6
      automatically matched to d1smla_
      complexed with gol, so4, zn
      1. region a:24-317 [133765]
    8. 2fm6
      automatically matched to d1smla_
      complexed with gol, so4, zn
      1. region b:24-317 [133766]
    9. 2h6a
      automatically matched to d1smla_
      complexed with so4, zn
      1. region a:24-317 [136183]
    10. 2h6a
      automatically matched to d1smla_
      complexed with so4, zn
      1. region b:24-317 [136184]
    11. 1sml
      complexed with zn
      1. chain a [42053]
    12. 2fu7
      automatically matched to d1smla_
      complexed with cu, gol, phn, so4
      1. region a:24-317 [134108]
    13. 2fu7
      automatically matched to d1smla_
      complexed with cu, gol, phn, so4
      1. region b:24-317 [134109]
    14. 2gfj
      automatically matched to d1smla_
      complexed with sul, vi, zn
      1. region a:24-317 [135097]
    15. 2gfj
      automatically matched to d1smla_
      complexed with sul, vi, zn
      1. region b:24-317 [135098]
    16. 2gfk
      automatically matched to d1smla_
      complexed with peg, sul, vii, zn
      1. region a:24-317 [135099]
    17. 2gfk
      automatically matched to d1smla_
      complexed with peg, sul, vii, zn
      1. region b:24-317 [135100]
    18. 2fu6
      automatically matched to d1smla_
      complexed with gol, so4
      1. region a:24-317 [134106]
    19. 2fu6
      automatically matched to d1smla_
      complexed with gol, so4
      1. region b:24-317 [134107]
    20. 2qdt
      automatically matched to d1smla_
      complexed with i38, so4, zn
      1. region a:2-267 [150673]
  4. Pseudomonas aeruginosa, IMP-1 [TaxId: 287] [56287] (8)
    1. 1jjt
      complexed with act, bds, zn
      1. chain a [63139]
      2. chain b [63140]
    2. 1jje
      complexed with act, bys, zn
      1. chain a [63117]
      2. chain b [63118]
    3. 1dd6
      complexed with mci, so4, zn
      1. chain a [42054]
      2. chain b [42055]
    4. 2doo
      automatically matched to d1jjeb_
      complexed with c4h, zn
      1. region a:4-219 [131605]
    5. 2doo
      automatically matched to d1jjeb_
      complexed with c4h, zn
      1. region b:4-219 [131606]
    6. 1vgn
      automatically matched to d1jjeb_
      complexed with acy, ops, zn
      1. region a:4-220 [120062]
    7. 1vgn
      automatically matched to d1jjeb_
      complexed with acy, ops, zn
      1. region b:4-220 [120063]
    8. 1ddk
      complexed with acy, zn
      1. chain a [42056]
  5. Pseudomonas aeruginosa, VIM-2 [TaxId: 287] [103316] (2)
    1. 1ko3
      complexed with act, cl, oh, zn
      1. chain a [90974]
    2. 1ko2
      complexed with act, zn
      1. chain a [90973]
  6. Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464] [82802] (3)
    1. 1k07
      complexed with act, gol, so4, zn
      1. chain a [77218]
      2. chain b [77219]
    2. 1jt1
      complexed with cl, gol, mco, so4, zn
      1. chain a [77168]
    3. 1l9y
      complexed with cl, gol, so4, zn; mutant
      1. chain a [84574]
      2. chain b [84575]
  7. Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238] [90049] (1)
    1. 1m2x
      complexed with gol, mco, na, zn
      1. chain a [84764]
      2. chain b [84765]
      3. chain c [84766]
      4. chain d [84767]
  8. Aeromonas hydrophila, CphA [TaxId: 644] [118144] (5)
    SQ P26918 28-252
    1. 1x8h
      complexed with co3, gol, sul, zn; mutant
      1. chain a [114961]
    2. 2qds
      automatically matched to d1x8ga_
      complexed with gol, mco, so4, zn
      1. region a:41-305 [150672]
    3. 1x8g
      complexed with co3, sul, zn
      1. chain a [114960]
    4. 2gkl
      automatically matched to d1x8ga_
      complexed with gol, pd2, zn
      1. region a:41-305 [135333]
    5. 1x8i
      complexed with bmh, gol, sul, zn; mutant
      1. chain a [114962]
  9. Bradyrhizobium japonicum [TaxId: 375] [160849] (2)
    SQ Q89GW5 29-292
    1. 2gmn
      complexed with zn
      1. region a:29-292 [147132]
    2. 2gmn
      automatically matched to 2GMN A:29-292
      complexed with zn
      1. region b:29-292 [147133]
  10. Pseudomonas putida [TaxId: 303] [160850] (2)
    1. 2yz3
      automatically matched to d1ko2a_
      complexed with m5p, so4, zn
      1. region a:12-236 [153835]
    2. 2yz3
      automatically matched to d1ko2a_
      complexed with m5p, so4, zn
      1. region b:12-236 [153836]
Hypothetical protein TM0207 [103317] (1)
1. Hypothetical protein TM0207 [103318]
  1. Thermotoga maritima [TaxId: 2336] [103319] (1)
    1. 1vjn
      structural genomics
      1. chain a [100825]
      2. chain b [100826]
Glyoxalase II (hydroxyacylglutathione hydrolase) [56288] (3)
1. Glyoxalase II (hydroxyacylglutathione hydrolase) [56289]
  1. Human (Homo sapiens) [TaxId: 9606] [56290] (2)
    1. 1qh5
      complexed with gbp, gtt, zn
      1. chain a [42057]
      2. chain b [42058]
    2. 1qh3
      complexed with act, cac, cl, mn, zn
      1. chain a [42059]
      2. chain b [42060]
  2. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [118145] (3)
    SQ Q9SID3
    1. 1xm8
      Structural genomics target
      complexed with acy, fe, peg, zn
      1. chain a [115475]
      2. chain b [115476]
    2. 2q42
      automatically matched to d1xm8a_
      complexed with acy, fe, peg, zn
      1. region a:1-254 [139819]
    3. 2q42
      automatically matched to d1xm8a_
      complexed with acy, fe, peg, zn
      1. region b:1-254 [139820]
  3. Salmonella typhimurium [TaxId: 90371] [160851] (1)
    SQ Q8ZRM2 1-251
    1. 2qed
      complexed with edo, fe
      1. region a:1-251 [150676]
ROO N-terminal domain-like [56291] (3)
1. Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain [56292]
  1. Desulfovibrio gigas [TaxId: 879] [56293] (1)
    1. 1e5d
      complexed with feo, fmn, oxy
      1. region a:2-250 [42061]
      2. region b:2-250 [42062]
2. ROO-like flavoprotein TM0755, N-terminal domain [111225]
  1. Thermotoga maritima [TaxId: 2336] [111226] (1)
    SQ Q9WZL4 #
    1. 1vme
      Structural genomics target
      complexed with cl, edo, feo
      1. region a:1-250 [108894]
      2. region b:1-250 [108896]
3. Nitric oxide reductase N-terminal domain [143914]
  1. Moorella thermoacetica [TaxId: 1525] [143915] (12)
    SQ Q9FDN7 2-250
    1. 1ycg
      automatically matched to 1YCF A:2-250
      complexed with edo, feo, fmn, zn
      1. region a:2-250 [122950]
    2. 1ycg
      automatically matched to 1YCF A:2-250
      complexed with edo, feo, fmn, zn
      1. region b:2-250 [122952]
    3. 1ycg
      automatically matched to 1YCF A:2-250
      complexed with edo, feo, fmn, zn
      1. region c:2-250 [122954]
    4. 1ycg
      automatically matched to 1YCF A:2-250
      complexed with edo, feo, fmn, zn
      1. region d:2-250 [122956]
    5. 1ycf
      complexed with feo, fmn, oxy, zn
      1. region a:2-250 [122942]
    6. 1ycf
      automatically matched to 1YCF A:2-250
      complexed with feo, fmn, oxy, zn
      1. region b:2-250 [122944]
    7. 1ycf
      automatically matched to 1YCF A:2-250
      complexed with feo, fmn, oxy, zn
      1. region c:2-250 [122946]
    8. 1ycf
      automatically matched to 1YCF A:2-250
      complexed with feo, fmn, oxy, zn
      1. region d:2-250 [122948]
    9. 1ych
      automatically matched to 1YCF A:2-250
      complexed with feo, fmn, zn
      1. region a:2-250 [122958]
    10. 1ych
      automatically matched to 1YCF A:2-250
      complexed with feo, fmn, zn
      1. region b:2-250 [122960]
    11. 1ych
      automatically matched to 1YCF A:2-250
      complexed with feo, fmn, zn
      1. region c:2-250 [122962]
    12. 1ych
      automatically matched to 1YCF A:2-250
      complexed with feo, fmn, zn
      1. region d:2-250 [122964]
Methyl parathion hydrolase [111227] (1)
1. Methyl parathion hydrolase [111228]
  1. Pseudomonas sp. WBC-3 [TaxId: 165468] [111229] (1)
    SQ Q841S6 Q693X1 Q93SP1
    1. 1p9e
      complexed with cd, k, na, zn
      1. chain a [104088]
      2. chain b [104089]
Coenzyme PQQ synthesis protein B, PqqB [118146] (1)
1. Coenzyme PQQ synthesis protein B, PqqB [118147]
  1. Pseudomonas putida [TaxId: 303] [118148] (1)
    SQ Q88QV5
    1. 1xto
      Structural genomics target
      complexed with zn
      1. chain a [116030]
RNase Z-like [143916] (3)
part of Pfam 00753; tRNA 3'-endonuclease; elaborated with additional structures and insert alpha(2)-beta(2) subdomain
1. Ribonuclease Z (RNase Z) [143917]
  1. Bacillus subtilis [TaxId: 1423] [143918] (3)
    SQ P54548 1-307
    1. 1y44
      complexed with gol, mes, po4, zn; mutant
      1. region a:1-307 [122608]
    2. 1y44
      automatically matched to 1Y44 A:1-307
      complexed with gol, mes, po4, zn; mutant
      1. region b:1-307 [122609]
    3. 2fk6
      complexed with gol, mes, zn; mutant
      1. region a:1-307 [133646]
  2. Escherichia coli [TaxId: 562] [143919] (1)
    SQ P0A8V0 1-305
    1. 2cbn
      complexed with zn
      1. region a:1-305 [130191]
  3. Thermotoga maritima [TaxId: 2336] [143920] (4)
    SQ Q9WZW8 1-280
    1. 2e7y
      automatically matched to d1ww1a1
      complexed with pgo, so4, zn
      1. region a:1-280 [146706]
    2. 2e7y
      automatically matched to d1ww1a1
      complexed with pgo, so4, zn
      1. region b:1-280 [146707]
    3. 1ww1
      insert subdomain is disordered in this structure
      complexed with zn
      1. region a:1-280 [121348]
    4. 1ww1
      automatically matched to 1WW1 A:1-280
      complexed with zn
      1. region b:1-280 [121349]
Pce catalytic domain-like [143921] (1)
part of Pfam 00753
1. Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain [143922]
  1. Streptococcus pneumoniae [TaxId: 1313] [143923] (3)
    SQ Q8DQ62 26-334! SQ Q8DQ62 30-334
    1. 2bib
      complexed with btb, ca, pc, zn
      1. region a:1-308 [128582]
    2. 1wra
      complexed with ca, fe, mpd, pc
      1. region a:30-334 [121190]
    3. 1wra
      automatically matched to 1WRA A:30-334
      complexed with ca, fe, mpd, pc
      1. region b:30-334 [121191]
YhfI-like [143924] (1)
part of Pfam 00753
1. Hypothetical protein BA1088 (BAS1016) [143925]
  B. subtilis YhfI ortholog
  1. Bacillus anthracis [TaxId: 1392] [143926] (4)
    SQ Q81U06 1-244
    1. 1zkp
      complexed with cl, na, zn
      1. region a:1-244 [125205]
    2. 1zkp
      automatically matched to 1ZKP A:1-244
      complexed with cl, na, zn
      1. region b:1-244 [125206]
    3. 1zkp
      automatically matched to 1ZKP A:1-244
      complexed with cl, na, zn
      1. region c:1-244 [125207]
    4. 1zkp
      automatically matched to 1ZKP A:1-244
      complexed with cl, na, zn
      1. region d:1-244 [125208]
beta-CASP RNA-metabolising hydrolases [143927] (4)
contains insertion of a single helicase-like alpha/beta domain (from scop_sf 52540) but without the P-loop motif
1. Hypothetical protein EF2904 [143928]
  1. Enterococcus faecalis [TaxId: 1351] [143929] (2)
    SQ Q82ZZ3 5-429
    1. 2az4
      complexed with zn
      1. region a:56-238 [127597]
    2. 2az4
      automatically matched to 2AZ4 A:56-238
      complexed with zn
      1. region b:56-238 [127598]
2. Cleavage factor two protein 2, CFT2 [160852]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [160853] (1)
    SQ Q12102 1-422,627-717
    1. 2i7x
      1. region a:1-422,a:626-717 [147560]
3. Putative RNA-degradation protein TTHA0252 [160854]
  1. Thermus thermophilus [TaxId: 274] [160855] (1)
    SQ Q5SLP1 1-431
    1. 2dkf
      complexed with zn
      1. region a:1-431 [146536]
4. Cleavage and polyadenylation specificity factor subunit 3 [160856]
  1. Human (Homo sapiens) [TaxId: 9606] [160857] (1)
    SQ Q9UKF6 9-459
    1. 2i7t
      complexed with so4, zn
      1. region a:9-459 [147559]
TM0894-like [143930] (1)
part of Pfam 00753
1. Hypothetical protein TM0894 [143931]
  1. Thermotoga maritima [TaxId: 2336] [143932] (4)
    SQ Q9WZZ6 1-207
    1. 1ztc
      complexed with mpd, ni, po4
      1. region a:1-207 [125635]
    2. 1ztc
      automatically matched to 1ZTC A:1-207
      complexed with mpd, ni, po4
      1. region b:1-207 [125636]
    3. 1ztc
      automatically matched to 1ZTC A:1-207
      complexed with mpd, ni, po4
      1. region c:1-205 [125637]
    4. 1ztc
      automatically matched to 1ZTC A:1-207
      complexed with mpd, ni, po4
      1. region d:1-206 [125638]
Ava3068-like [160858] (1)
1. Hypothetical protein Ava3068 [160859]
  1. Anabaena variabilis [TaxId: 1172] [160860] (2)
    SQ Q3M8K9 1-200
    1. 2p97
      complexed with cl, mg
      1. region a:1-200 [149328]
    2. 2p97
      automatically matched to 2P97 A:1-200
      complexed with cl, mg
      1. region b:1-200 [149329]
Alkylsulfatase-like [160861] (1)
subfamily of Pfam 00753; includes all-alpha linker subdomain
1. Alkylsulfatase SdsA1 [160862]
  1. Pseudomonas aeruginosa [TaxId: 287] [160863] (4)
    SQ Q9I5I9 20-524
    1. 2cfu
      complexed with 1db, ipa, peg, zn
      1. region a:20-524 [146387]
    2. 2cfz
      automatically matched to 2CFU A:20-524
      complexed with 1do, peg, zn
      1. region a:20-524 [146389]
    3. 2cg2
      automatically matched to 2CFU A:20-524
      complexed with so4, zn
      1. region a:20-523 [146391]
    4. 2cg3
      automatically matched to 2CFU A:20-524
      complexed with zn
      1. region a:20-524 [146393]
PqsE-like [160864] (1)
part of Pfam 00753; extended C-terminal region with extra helices
1. Quinolone signal response protein PqsE [160865]
  1. Pseudomonas aeruginosa [TaxId: 287] [160866] (3)
    SQ Q02IG5 1-301
    1. 2q0i
      automatically matched to 2Q0J A:1-301
      complexed with bez, fe
      1. region a:1-298 [149986]
    2. 2q0j
      complexed with bez, fe
      1. region a:1-301 [149987]
    3. 2q0j
      automatically matched to 2Q0J A:1-301
      complexed with bez, fe
      1. region b:1-301 [149988]