Structural Classification of Proteins
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Superfamily: Metallo-hydrolase/oxidoreductase

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Metallo-hydrolase/oxidoreductase [56280]
    duplication of beta(4)-alpha-beta-alpha motif; 4 layers a/b/b/a; mixed beta-sheets
  4. Superfamily: Metallo-hydrolase/oxidoreductase [56281]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Zn metallo-beta-lactamase [56282] (10)
    1. Zn metallo-beta-lactamase [56283]
      1. Bacillus cereus [TaxId: 1396] [56284] (7) picpic
        SQ P04190 31-257
      2. Bacteroides fragilis [TaxId: 817] [56285] (9) picpic
      3. Xanthomonas maltophilia [TaxId: 40324] [56286] (20) picpic
      4. Pseudomonas aeruginosa, IMP-1 [TaxId: 287] [56287] (8) picpic
      5. Pseudomonas aeruginosa, VIM-2 [TaxId: 287] [103316] (2) picpic
      6. Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464] [82802] (3) picpic
      7. Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238] [90049] (1) picpic
      8. Aeromonas hydrophila, CphA [TaxId: 644] [118144] (5) picpic
        SQ P26918 28-252
      9. Bradyrhizobium japonicum [TaxId: 375] [160849] (2) picpic
        SQ Q89GW5 29-292
      10. Pseudomonas putida [TaxId: 303] [160850] (2) picpic
  2. Hypothetical protein TM0207 [103317] (1)
    1. Hypothetical protein TM0207 [103318]
      1. Thermotoga maritima [TaxId: 2336] [103319] (1) picpic
  3. Glyoxalase II (hydroxyacylglutathione hydrolase) [56288] (3)
    1. Glyoxalase II (hydroxyacylglutathione hydrolase) [56289]
      1. Human (Homo sapiens) [TaxId: 9606] [56290] (2) picpic
      2. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [118145] (3) picpic
        SQ Q9SID3
      3. Salmonella typhimurium [TaxId: 90371] [160851] (1) picpic
        SQ Q8ZRM2 1-251
  4. ROO N-terminal domain-like [56291] (3)
    1. Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain [56292]
      1. Desulfovibrio gigas [TaxId: 879] [56293] (1) picpic
    2. ROO-like flavoprotein TM0755, N-terminal domain [111225]
      1. Thermotoga maritima [TaxId: 2336] [111226] (1) picpic
        SQ Q9WZL4 #
    3. Nitric oxide reductase N-terminal domain [143914]
      1. Moorella thermoacetica [TaxId: 1525] [143915] (12) picpic
        SQ Q9FDN7 2-250
  5. Methyl parathion hydrolase [111227] (1)
    1. Methyl parathion hydrolase [111228]
      1. Pseudomonas sp. WBC-3 [TaxId: 165468] [111229] (1) picpic
        SQ Q841S6 Q693X1 Q93SP1
  6. Coenzyme PQQ synthesis protein B, PqqB [118146] (1)
    1. Coenzyme PQQ synthesis protein B, PqqB [118147]
      1. Pseudomonas putida [TaxId: 303] [118148] (1) picpic
        SQ Q88QV5
  7. RNase Z-like [143916] (3)
    part of Pfam 00753; tRNA 3'-endonuclease; elaborated with additional structures and insert alpha(2)-beta(2) subdomain
    1. Ribonuclease Z (RNase Z) [143917]
      1. Bacillus subtilis [TaxId: 1423] [143918] (3) picpic
        SQ P54548 1-307
      2. Escherichia coli [TaxId: 562] [143919] (1) picpic
        SQ P0A8V0 1-305
      3. Thermotoga maritima [TaxId: 2336] [143920] (4) picpic
        SQ Q9WZW8 1-280
  8. Pce catalytic domain-like [143921] (1)
    part of Pfam 00753
    1. Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain [143922]
      1. Streptococcus pneumoniae [TaxId: 1313] [143923] (3) picpic
        SQ Q8DQ62 26-334! SQ Q8DQ62 30-334
  9. YhfI-like [143924] (1)
    part of Pfam 00753
    1. Hypothetical protein BA1088 (BAS1016) [143925]
      B. subtilis YhfI ortholog
      1. Bacillus anthracis [TaxId: 1392] [143926] (4) picpic
        SQ Q81U06 1-244
  10. beta-CASP RNA-metabolising hydrolases [143927] (4)
    contains insertion of a single helicase-like alpha/beta domain (from scop_sf 52540) but without the P-loop motif
    1. Hypothetical protein EF2904 [143928]
      1. Enterococcus faecalis [TaxId: 1351] [143929] (2) picpic
        SQ Q82ZZ3 5-429
    2. Cleavage factor two protein 2, CFT2 [160852]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [160853] (1) picpic
        SQ Q12102 1-422,627-717
    3. Putative RNA-degradation protein TTHA0252 [160854]
      1. Thermus thermophilus [TaxId: 274] [160855] (1) picpic
        SQ Q5SLP1 1-431
    4. Cleavage and polyadenylation specificity factor subunit 3 [160856]
      1. Human (Homo sapiens) [TaxId: 9606] [160857] (1) picpic
        SQ Q9UKF6 9-459
  11. TM0894-like [143930] (1)
    part of Pfam 00753
    1. Hypothetical protein TM0894 [143931]
      1. Thermotoga maritima [TaxId: 2336] [143932] (4) picpic
        SQ Q9WZZ6 1-207
  12. Ava3068-like [160858] (1)
    1. Hypothetical protein Ava3068 [160859]
      1. Anabaena variabilis [TaxId: 1172] [160860] (2) picpic
        SQ Q3M8K9 1-200
  13. Alkylsulfatase-like [160861] (1)
    subfamily of Pfam 00753; includes all-alpha linker subdomain
    1. Alkylsulfatase SdsA1 [160862]
      1. Pseudomonas aeruginosa [TaxId: 287] [160863] (4) picpic
        SQ Q9I5I9 20-524
  14. PqsE-like [160864] (1)
    part of Pfam 00753; extended C-terminal region with extra helices
    1. Quinolone signal response protein PqsE [160865]
      1. Pseudomonas aeruginosa [TaxId: 287] [160866] (3) picpic
        SQ Q02IG5 1-301
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk