Family: RNase Z-like

part of Pfam 00753; tRNA 3'-endonuclease; elaborated with additional structures and insert alpha(2)-beta(2) subdomain

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a+b) [53931]
   Mainly antiparallel beta sheets (segregated alpha and beta regions)
3. Fold: Metallo-hydrolase/oxidoreductase [56280]
   duplication of beta(4)-alpha-beta-alpha motif; 4 layers a/b/b/a; mixed beta-sheets
4. Superfamily: Metallo-hydrolase/oxidoreductase [56281]
   uperfamily
5. Family: RNase Z-like [143916]
   part of Pfam 00753; tRNA 3'-endonuclease; elaborated with additional structures and insert alpha(2)-beta(2) subdomain

Protein Domains:

1. Ribonuclease Z (RNase Z) [143917]
   1. Bacillus subtilis [TaxId: 1423] [143918] (3)
      SQ P54548 1-307
      1. 1y44
         complexed with gol, mes, po4, zn; mutant
         1. region a:1-307 [122608]
      2. 1y44
         automatically matched to 1Y44 A:1-307
         complexed with gol, mes, po4, zn; mutant
         1. region b:1-307 [122609]
      3. 2fk6
         complexed with gol, mes, zn; mutant
         1. region a:1-307 [133646]
   2. Escherichia coli [TaxId: 562] [143919] (1)
      SQ P0A8V0 1-305
      1. 2cbn
         complexed with zn
         1. region a:1-305 [130191]
   3. Thermotoga maritima [TaxId: 2336] [143920] (4)
      SQ Q9WZW8 1-280
      1. 2e7y
         automatically matched to d1ww1a1
         complexed with pgo, so4, zn
         1. region a:1-280 [146706]
      2. 2e7y
         automatically matched to d1ww1a1
         complexed with pgo, so4, zn
         1. region b:1-280 [146707]
      3. 1ww1
         insert subdomain is disordered in this structure
         complexed with zn
         1. region a:1-280 [121348]
      4. 1ww1
         automatically matched to 1WW1 A:1-280
         complexed with zn
         1. region b:1-280 [121349]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk