Structural Classification of Proteins
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Superfamily: LDH C-terminal domain-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: LDH C-terminal domain-like [56326]
    unusual fold, defines family
  4. Superfamily: LDH C-terminal domain-like [56327]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Lactate & malate dehydrogenases, C-terminal domain [56328] (28)
    N-terminal domain is NAD-binding module (alpha/beta Rossmann-fold domain)
    1. Malate dehydrogenase [56329]
      1. Pig (Sus scrofa) [TaxId: 9823] [56330] (3)
        1. 1mld picpicxref
          complexed with cit
          1. region a:145-313 [42089] picpiclink
          2. region b:145-313 [42090] picpiclink
          3. region c:145-313 [42091] picpiclink
          4. region d:145-313 [42092] picpiclink
        2. 5mdh picpicxref
          complexed with mak, nad
          1. region a:155-333 [42093] picpiclink
          2. region b:155-333 [42094] picpiclink
        3. 4mdh picpicxref
          complexed with nad, sul
          1. region a:155-333 [42095] picpiclink
          2. region b:155-333 [42096] picpiclink
      2. Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558] [56331] (1)
        1. 7mdh picpicxref
          complexed with zn; mutant
          1. region a:198-385 [42097] picpiclink
          2. region b:198-386 [42098] picpiclink
          3. region c:198-384 [42099] picpiclink
          4. region d:198-381 [42100] picpiclink
      3. Flaveria bidentis, chloroplast [TaxId: 4224] [56332] (1)
        1. 1civ picpicxref
          complexed with nap
          1. region a:194-385 [42101] picpiclink
      4. Escherichia coli [TaxId: 562] [56333] (8)
        1. 2cmd picpicxref
          complexed with cit
          1. region a:146-312 [42102] picpiclink
        2. 1emd picpicxref
          complexed with cit, nad
          1. region a:146-312 [42103] picpiclink
        3. 1ib6 picpicxref
          complexed with nad, so4; mutant
          1. region a:146-312 [62147] picpiclink
          2. region b:146-312 [62149] picpiclink
          3. region c:146-312 [62151] picpiclink
          4. region d:146-312 [62153] picpiclink
        4. 2pwz picpicxrefxrefxrefxref
          automatically matched to d1emd_2
          1. region a:146-312 [139767] picpiclink
        5. 2pwz picpicxrefxrefxrefxref
          automatically matched to d1emd_2
          1. region c:146-312 [139769] picpiclink
        6. 2pwz picpicxrefxrefxrefxref
          automatically matched to d1emd_2
          1. region e:146-312 [139771] picpiclink
        7. 2pwz picpicxrefxrefxrefxref
          automatically matched to d1emd_2
          1. region g:146-312 [139773] picpiclink
        8. 1ie3 picpicxref
          complexed with nad, pyr; mutant
          1. region a:146-312 [62305] picpiclink
          2. region b:146-312 [62307] picpiclink
          3. region c:146-312 [62309] picpiclink
          4. region d:146-312 [62311] picpiclink
      5. Thermus flavus [TaxId: 274] [56334] (2)
        1. 1bdm picpicxref
          complexed with nax; mutant
          1. region a:155-332 [42104] picpiclink
          2. region b:155-332 [42105] picpiclink
        2. 1bmd picpicxref
          complexed with nad
          1. region a:155-332 [42106] picpiclink
          2. region b:155-332 [42107] picpiclink
      6. Thermus thermophilus [TaxId: 274] [82806] (9)
        identical sequence to that from the Thermus flavus enzyme
        1. 1y7t picpicxrefxref
          automatically matched to d1iz9a2
          complexed with ndp, trs
          1. region a:154-332 [122719] picpiclink
        2. 1y7t picpicxrefxref
          automatically matched to d1iz9a2
          complexed with ndp, trs
          1. region b:154-332 [122721] picpiclink
        3. 1wze picpicxrefxref
          automatically matched to d1iz9a2
          complexed with nad; mutant
          1. region a:154-332 [121496] picpiclink
        4. 1wze picpicxrefxref
          automatically matched to d1iz9a2
          complexed with nad; mutant
          1. region b:154-332 [121498] picpiclink
        5. 1wzi picpicxrefxref
          automatically matched to d1iz9a2
          complexed with ndp; mutant
          1. region a:154-332 [121504] picpiclink
        6. 1wzi picpicxrefxref
          automatically matched to d1iz9a2
          complexed with ndp; mutant
          1. region b:154-332 [121506] picpiclink
        7. 1iz9 picpicxref
          1. region a:155-327 [76985] picpiclink
          2. region b:155-327 [76987] picpiclink
        8. 2cvq picpicxrefxref
          automatically matched to d1iz9a2
          complexed with nap, trs
          1. region a:154-332 [130886] picpiclink
        9. 2cvq picpicxrefxref
          automatically matched to d1iz9a2
          complexed with nap, trs
          1. region b:154-332 [130888] picpiclink
      7. Archaeon Haloarcula marismortui [TaxId: 2238] [56335] (17)
        1. 2j5k picpicxrefxrefxrefxref
          automatically matched to d1d3aa2
          complexed with cl
          1. region a:164-330 [138038] picpiclink
        2. 2j5k picpicxrefxrefxrefxref
          automatically matched to d1d3aa2
          complexed with cl
          1. region b:164-330 [138040] picpiclink
        3. 2j5k picpicxrefxrefxrefxref
          automatically matched to d1d3aa2
          complexed with cl
          1. region c:164-330 [138042] picpiclink
        4. 2j5k picpicxrefxrefxrefxref
          automatically matched to d1d3aa2
          complexed with cl
          1. region d:164-330 [138044] picpiclink
        5. 1o6z picpicxref
          complexed with cl, nad; mutant
          1. region a:163-330 [81108] picpiclink
          2. region b:163-330 [81110] picpiclink
          3. region c:163-330 [81112] picpiclink
          4. region d:163-330 [81114] picpiclink
        6. 2j5q picpicxrefxrefxrefxref
          automatically matched to d1d3aa2
          complexed with cl
          1. region a:164-330 [138052] picpiclink
        7. 2j5q picpicxrefxrefxrefxref
          automatically matched to d1d3aa2
          complexed with cl
          1. region b:164-330 [138054] picpiclink
        8. 2j5q picpicxrefxrefxrefxref
          automatically matched to d1d3aa2
          complexed with cl
          1. region c:164-330 [138056] picpiclink
        9. 2j5q picpicxrefxrefxrefxref
          automatically matched to d1d3aa2
          complexed with cl
          1. region d:164-330 [138058] picpiclink
        10. 2j5r picpicxrefxrefxrefxref
          automatically matched to d1d3aa2
          complexed with cl
          1. region a:164-330 [138060] picpiclink
        11. 2j5r picpicxrefxrefxrefxref
          automatically matched to d1d3aa2
          complexed with cl
          1. region b:164-330 [138062] picpiclink
        12. 2j5r picpicxrefxrefxrefxref
          automatically matched to d1d3aa2
          complexed with cl
          1. region c:164-330 [138064] picpiclink
        13. 2j5r picpicxrefxrefxrefxref
          automatically matched to d1d3aa2
          complexed with cl
          1. region d:164-330 [138066] picpiclink
        14. 2hlp picpicxref
          1. region a:163-330 [42108] picpiclink
          2. region b:163-330 [42109] picpiclink
        15. 1d3a picpicxref
          complexed with cl, na
          1. region a:163-330 [42110] picpiclink
          2. region b:163-330 [42111] picpiclink
        16. 1gt2 picpicxref
          complexed with cl, na, nad; mutant
          1. region a:163-330 [76339] picpiclink
          2. region b:163-330 [76341] picpiclink
        17. 1hlp picpicxref
          complexed with nad
          1. region a:163-328 [42112] picpiclink
          2. region b:163-328 [42113] picpiclink
      8. Aquaspirillum arcticum [TaxId: 87645] [56336] (3)
        1. 1b8p picpicxref
          1. region a:159-329 [42114] picpiclink
        2. 1b8v picpicxref
          complexed with nah
          1. region a:159-329 [42115] picpiclink
        3. 1b8u picpicxref
          complexed with nad, oaa
          1. region a:159-329 [42116] picpiclink
      9. Chloroflexus aurantiacus [TaxId: 1108] [69840] (7)
        SQ P80040
        1. 1uxj picpicxref
          complexed with cd, cl, na, nad; mutant
          1. region a:144-307 [108113] picpiclink
          2. region c:144-307 [108115] picpiclink
        2. 1uxk picpicxref
          complexed with cd, cl, na, nad; mutant
          1. region a:144-307 [108117] picpiclink
          2. region c:144-307 [108119] picpiclink
        3. 1ur5 picpicxref
          complexed with cd, cl, na, nad; mutant
          1. region a:144-308 [99808] picpiclink
          2. region c:144-309 [99810] picpiclink
        4. 1guy picpicxref
          complexed with cd, nad
          1. region a:144-306 [65583] picpiclink
          2. region c:144-306 [65585] picpiclink
        5. 1uxg picpicxref
          complexed with fmr, nad; mutant
          1. region a:144-307 [108101] picpiclink
          2. region b:144-307 [108103] picpiclink
        6. 1uxh picpicxref
          complexed with fmr, nad; mutant
          1. region a:144-307 [108105] picpiclink
          2. region b:144-307 [108107] picpiclink
        7. 1uxi picpicxref
          complexed with fmr, na, nad; mutant
          1. region a:144-307 [108109] picpiclink
          2. region b:144-307 [108111] picpiclink
      10. Chlorobium tepidum [TaxId: 1097] [69841] (1)
        1. 1gv0 picpicxref
          complexed with nad
          1. region a:143-305 [65595] picpiclink
          2. region b:143-305 [65597] picpiclink
      11. Chlorobium vibrioforme [TaxId: 1098] [69842] (2)
        1. 1guz picpicxref
          complexed with nad
          1. region a:143-305 [65587] picpiclink
          2. region b:143-305 [65589] picpiclink
          3. region c:143-305 [65591] picpiclink
          4. region d:143-305 [65593] picpiclink
        2. 1gv1 picpicxref
          1. region a:143-305 [65599] picpiclink
          2. region b:143-299 [65601] picpiclink
          3. region c:143-305 [65603] picpiclink
          4. region d:143-302 [65605] picpiclink
    2. L-2-hydroxyisocapronate dehydrogenase, L-HICDH [56337]
      1. Lactobacillus confusus [TaxId: 1583] [56338] (1)
        1. 1hyh picpicxref
          complexed with nad, so4
          1. region a:167-329 [42117] picpiclink
          2. region b:167-326 [42118] picpiclink
          3. region c:167-329 [42119] picpiclink
          4. region d:167-329 [42120] picpiclink
    3. Lactate dehydrogenase [56339]
      1. Pig (Sus scrofa) [TaxId: 9823] [56340] (3)
        1. 9ldt picpicxref
          complexed with nad, oxm, so4
          1. region a:163-331 [42121] picpiclink
          2. region b:163-331 [42122] picpiclink
        2. 9ldb picpicxref
          complexed with nad, oxm, so4
          1. region a:163-331 [42123] picpiclink
          2. region b:163-331 [42124] picpiclink
        3. 5ldh picpicxref
          complexed with cit, nal
          1. region a:163-331 [42125] picpiclink
      2. Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606] [64444] (2)
        1. 1i0z picpicxref
          complexed with nai, oxm
          1. region a:161-332 [61496] picpiclink
          2. region b:161-332 [61498] picpiclink
        2. 1t2f picpicxref
          complexed with nad, oxq; mutant
          1. region a:161-332 [99089] picpiclink
          2. region b:161-332 [99091] picpiclink
          3. region c:161-332 [99093] picpiclink
          4. region d:161-332 [99095] picpiclink
      3. Human (Homo sapiens), muscle isoform (M chain) [TaxId: 9606] [64445] (1)
        1. 1i10 picpicxref
          complexed with act, nai, oxm
          1. region a:160-331 [61500] picpiclink
          2. region b:160-331 [61502] picpiclink
          3. region c:160-331 [61504] picpiclink
          4. region d:160-331 [61506] picpiclink
          5. region e:160-331 [61508] picpiclink
          6. region f:160-331 [61510] picpiclink
          7. region g:160-331 [61512] picpiclink
          8. region h:160-331 [61514] picpiclink
      4. Mouse (Mus musculus) [TaxId: 10090] [56341] (4)
        1. 2ldx picpicxrefxrefxrefxref
          1. region a:160-331 [42126] picpiclink
        2. 2ldx picpicxrefxrefxrefxref
          duplicate of 2LDX 160-331
          1. region b:160-331 [118643] picpiclink
        3. 2ldx picpicxrefxrefxrefxref
          duplicate of 2LDX 160-331
          1. region c:160-331 [118645] picpiclink
        4. 2ldx picpicxrefxrefxrefxref
          duplicate of 2LDX 160-331
          1. region d:160-331 [118647] picpiclink
      5. Dogfish (Squalus acanthias) [TaxId: 7797] [56342] (3)
        1. 1ldm picpicxref
          complexed with nad, oxm
          1. region a:161-329 [42127] picpiclink
        2. 6ldh picpicxref
          complexed with so4
          1. region a:161-329 [42128] picpiclink
        3. 8ldh picpicxref
          complexed with cit
          1. region a:161-329 [42129] picpiclink
      6. Malaria parasite (Plasmodium falciparum) [TaxId: 5833] [56343] (9)
        1. 1t2d picpicxref
          complexed with gol, nad, oxl
          1. region a:151-315 [99085] picpiclink
        2. 1t24 picpicxref
          complexed with gol, nad, oxq
          1. region a:164-329 [99070] picpiclink
        3. 1t26 picpicxref
          complexed with gbd, nai
          1. region a:164-330 [99074] picpiclink
        4. 1t25 picpicxref
          complexed with gag, gol, nai
          1. region a:164-329 [99072] picpiclink
        5. 1t2e picpicxref
          complexed with gol, nai, oxm; mutant
          1. region a:164-331 [99087] picpiclink
        6. 1ldg picpicxref
          complexed with nad, oxm
          1. region a:164-329 [42132] picpiclink
        7. 1t2c picpicxref
          complexed with gol, nai
          1. region a:164-329 [99083] picpiclink
        8. 1cet picpicxref
          complexed with clq
          1. region a:164-329 [42131] picpiclink
        9. 1ceq picpicxref
          1. region a:164-329 [42130] picpiclink
      7. Plasmodium berghei [TaxId: 5821] [103325] (7)
        1. 2a94 picpicxref
          automatically matched to d1oc4a2
          complexed with ap0
          1. region a:164-328 [126424] picpiclink
        2. 1u4o picpicxref
          automatically matched to d1oc4a2
          complexed with mpd, ndd
          1. region a:164-328 [119528] picpiclink
        3. 1xiv picpicxref
          automatically matched to d1oc4a2
          complexed with gol, rb2
          1. region a:164-328 [122019] picpiclink
        4. 1u5a picpicxref
          automatically matched to d1oc4a2
          complexed with bik
          1. region a:164-328 [119533] picpiclink
        5. 1u4s picpicxref
          automatically matched to d1oc4a2
          complexed with bih
          1. region a:164-328 [119530] picpiclink
        6. 1u5c picpicxref
          automatically matched to d1oc4a2
          complexed with bik, nad
          1. region a:164-328 [119535] picpiclink
        7. 1oc4 picpicxref
          complexed with gol, nad, oxm
          1. region a:164-329 [92771] picpiclink
          2. region b:164-329 [92773] picpiclink
      8. Toxoplasma gondii [TaxId: 5811] [103326] (4)
        1. 1pzg picpicxref
          complexed with a3d, so4
          1. region a:164-334 [95426] picpiclink
          2. region b:164-334 [95428] picpiclink
          3. region c:164-332 [95430] picpiclink
          4. region d:164-332 [95432] picpiclink
        2. 1pzh picpicxref
          complexed with nad, oxl
          1. region a:164-335 [95434] picpiclink
          2. region b:164-335 [95436] picpiclink
          3. region c:164-332 [95438] picpiclink
          4. region d:164-332 [95440] picpiclink
        3. 1pze picpicxref
          1. region a:164-332 [95416] picpiclink
        4. 1pzf picpicxref
          complexed with a3d, oxl
          1. region a:164-334 [95418] picpiclink
          2. region b:164-334 [95420] picpiclink
          3. region c:164-332 [95422] picpiclink
          4. region d:164-332 [95424] picpiclink
      9. Bacillus stearothermophilus [TaxId: 1422] [56344] (9)
        1. 1ldn picpicxref
          complexed with fbp, nad, oxm
          1. region a:163-330 [42133] picpiclink
          2. region b:163-330 [42134] picpiclink
          3. region c:163-330 [42135] picpiclink
          4. region d:163-330 [42136] picpiclink
          5. region e:163-330 [42137] picpiclink
          6. region f:163-330 [42138] picpiclink
          7. region g:163-330 [42139] picpiclink
          8. region h:163-330 [42140] picpiclink
        2. 1ldb picpicxrefxrefxrefxref
          complexed with so4
          1. region a:163-331 [42141] picpiclink
        3. 1ldb picpicxrefxrefxrefxref
          duplicate of 1LDB 163-331
          complexed with so4
          1. region b:163-331 [118524] picpiclink
        4. 1ldb picpicxrefxrefxrefxref
          duplicate of 1LDB 163-331
          complexed with so4
          1. region c:163-331 [118526] picpiclink
        5. 1ldb picpicxrefxrefxrefxref
          duplicate of 1LDB 163-331
          complexed with so4
          1. region d:163-331 [118528] picpiclink
        6. 2ldb picpicxrefxrefxrefxref
          complexed with fbp, nad, so4
          1. region a:163-331 [42142] picpiclink
        7. 2ldb picpicxrefxrefxrefxref
          duplicate of 2LDB 163-331
          complexed with fbp, nad, so4
          1. region b:163-331 [118637] picpiclink
        8. 2ldb picpicxrefxrefxrefxref
          duplicate of 2LDB 163-331
          complexed with fbp, nad, so4
          1. region c:163-331 [118639] picpiclink
        9. 2ldb picpicxrefxrefxrefxref
          duplicate of 2LDB 163-331
          complexed with fbp, nad, so4
          1. region d:163-331 [118641] picpiclink
      10. Lactobacillus casei [TaxId: 1582] [56345] (1)
        1. 1llc picpicxref
          complexed with fbp, so4
          1. region a:165-334 [42143] picpiclink
      11. Lactobacillus pentosus [TaxId: 1589] [69843] (1)
        1. 1ez4 picpicxref
          complexed with nad
          1. region a:163-334 [64918] picpiclink
          2. region b:163-335 [64920] picpiclink
          3. region c:163-334 [64922] picpiclink
          4. region d:163-335 [64924] picpiclink
      12. Bifidobacterium longum, strain am101-2 [TaxId: 216816] [56346] (2)
        1. 1lld picpicxref
          complexed with nad; mutant
          1. region a:150-319 [42144] picpiclink
          2. region b:150-319 [42145] picpiclink
        2. 1lth picpicxref
          complexed with fbp, nad, oxm; mutant
          1. region r:150-319 [42146] picpiclink
          2. region t:150-319 [42147] picpiclink
      13. Thermotoga maritima [TaxId: 2336] [56347] (1)
        1. 1a5z picpicxref
          complexed with cd, fbp, nad, oxm
          1. region a:164-333 [42148] picpiclink
      14. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [111253] (2)
        SQ O08349
        1. 1oju picpicxref
          complexed with ena, nca, so4
          1. region a:164-331 [103991] picpiclink
        2. 1ojs picpicxref
          complexed with na, nad, so4
          1. region a:164-331 [103989] picpiclink
      15. Clostridium thermocellum [TaxId: 1515] [118160] (1)
        SQ Q4CDK5
        1. 1y6j picpicxref
          Structural genomics target
          1. region a:149-317 [116508] picpiclink
    4. MJ0490, lactate/malate dehydrogenase [64446]
      1. Archaeon Methanococcus jannaschii [TaxId: 2190] [64447] (2)
        1. 1hye picpicxref
          complexed with nap
          1. region a:146-313 [61401] picpiclink
        2. 1hyg picpicxref
          complexed with nap
          1. region a:146-313 [61403] picpiclink
          2. region b:146-313 [61405] picpiclink
  2. AglA-like glucosidase [90050] (5)
    family 4 glycosyl hydrolase
    1. Alpha-glucosidase AglA [90051]
      1. Thermotoga maritima [TaxId: 2336] [90052] (1)
        TM1834
        1. 1obb picpicxref
          complexed with csw, mal, nad
          1. region a:173-480 [86761] picpiclink
          2. region b:173-480 [86763] picpiclink
    2. Putative alpha-glucosidase TM0752 [103327]
      1. Thermotoga maritima [TaxId: 2336] [103328] (1)
        1. 1vjt picpicxref
          structural genomics
          complexed with nad
          1. region a:192-469 [100834] picpiclink
    3. Maltose-6'-phosphate glucosidase GlvA [103329]
      1. Bacillus subtilis [TaxId: 1423] [103330] (1)
        SQ P54716
        1. 1u8x picpicxref
          complexed with g6p, mn, nad
          1. region x:170-445 [107742] picpiclink
    4. 6-phospho-beta-glucosidase [111254]
      1. Bacillus stearothermophilus [TaxId: 1422] [111255] (1)
        SQ P84135
        1. 1s6y picpicxref
          1. region a:173-445 [105315] picpiclink
      2. Thermotoga maritima [TaxId: 2336] [111256] (3)
        SQ Q9X108
        1. 1up7 picpicxref
          complexed with g6p, nad, so4
          1. region a:163-415 [113375] picpiclink
          2. region b:163-415 [113377] picpiclink
          3. region c:163-415 [113379] picpiclink
          4. region d:163-415 [113381] picpiclink
          5. region e:163-415 [113383] picpiclink
          6. region f:163-415 [113385] picpiclink
          7. region g:163-415 [113387] picpiclink
          8. region h:163-415 [113389] picpiclink
        2. 1up6 picpicxref
          complexed with g6p, mn, nad, so4
          1. region a:163-415 [107977] picpiclink
          2. region b:163-415 [107979] picpiclink
          3. region c:163-415 [107981] picpiclink
          4. region d:163-415 [107983] picpiclink
          5. region e:163-415 [107985] picpiclink
          6. region f:163-415 [107987] picpiclink
          7. region g:163-415 [107989] picpiclink
          8. region h:163-415 [107991] picpiclink
        3. 1up4 picpicxref
          1. region a:163-415 [113359] picpiclink
          2. region b:163-415 [113361] picpiclink
          3. region c:163-415 [113363] picpiclink
          4. region d:163-415 [113365] picpiclink
          5. region e:163-415 [113367] picpiclink
          6. region f:163-415 [113369] picpiclink
          7. region g:163-415 [113371] picpiclink
          8. region h:163-415 [113373] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
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