Structural Classification of Proteins
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Fold: ADP-ribosylation

unusual fold

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: ADP-ribosylation [56398]
    unusual fold

Superfamilies:

  1. ADP-ribosylation [56399] (7)
    link to SUPERFAMILY database - Superfamily
    1. ADP-ribosylating toxins [56400] (12)
      1. Heat-labile toxin, A-chain [56401]
        1. Escherichia coli, type IB [TaxId: 562] [56402] (9)
          1. 1lts picpicxref
            1. chain a,c [42229] picpiclink
          2. 1lt3 picpicxref
            complexed with gal, glc; mutant
            1. chain a [42230] picpiclink
          3. 1lt4 picpicxref
            complexed with gal, glc; mutant
            1. chain a [42231] picpiclink
          4. 1lta picpicxref
            complexed with gal
            1. chain a,c [42232] picpiclink
          5. 1lti picpicxref
            complexed with gal, nga
            1. chain a,c [42233] picpiclink
          6. 1ltt picpicxref
            complexed with gal, glc
            1. chain a,c [42234] picpiclink
          7. 1ltg picpicxref
            mutant
            1. chain a,c [42235] picpiclink
          8. 1ltb picpicxref
            1. chain a,c [42236] picpiclink
          9. 1htl picpicxref
            mutant
            1. chain a,c [42237] picpiclink
        2. Escherichia coli, type IIB [TaxId: 562] [56403] (1)
          1. 1tii picpicxref
            1. chain a,c [42238] picpiclink
      2. Diphtheria toxin, N-terminal domain [56404]
        1. Corynebacterium diphtheriae [TaxId: 1717] [56405] (7)
          1. 1f0l picpicxrefxref
            complexed with apu, cl
            1. region a:1-187 [42239] picpiclink
            2. region b:1-187 [42240] picpiclink
          2. 1ddt picpicxrefxref
            complexed with apu
            1. region a:1-187 [42241] picpiclink
          3. 1sgk picpicxrefxref
            1. region a:1-187 [42242] picpiclink
          4. 1mdt picpicxrefxref
            complexed with apu
            1. region a:1-187 [42243] picpiclink
            2. region b:1-187 [42244] picpiclink
          5. 1xdt picpicxrefxrefxref
            1. region t:1-188 [42245] picpiclink
          6. 1tox picpicxrefxref
            complexed with nad
            1. region a:1-187 [42246] picpiclink
            2. region b:1-187 [42247] picpiclink
          7. 1dtp picpic
            one domain only
            complexed with apu
            1. chain a [42248] picpiclink
      3. Exotoxin A, C-terminal domain [56406]
        1. Pseudomonas aeruginosa [TaxId: 287] [56407] (21)
          1. 1ikp picpicxrefxref
            complexed with cl, na; mutant
            1. region a:395-606 [66183] picpiclink
          2. 1ikq picpicxrefxref
            complexed with cl, na
            1. region a:395-606 [66186] picpiclink
          3. 1xk9 picpic
            automatically matched to d1ikpa2
            complexed with p34
            1. region a:399-602 [122074] picpiclink
          4. 1xk9 picpic
            automatically matched to d1ikpa2
            complexed with p34
            1. region b:399-602 [122075] picpiclink
          5. 1aer picpic
            complexed with amp, tad, tia
            1. chain a [42249] picpiclink
            2. chain b [42250] picpiclink
          6. 1dma picpic
            complexed with amp, nca
            1. chain a [42251] picpiclink
            2. chain b [42252] picpiclink
          7. 2zit picpic
            automatically matched to d1ikpa2
            complexed with dde, nad
            1. region b:400-605 [154481] picpiclink
          8. 2zit picpic
            automatically matched to d1ikpa2
            complexed with dde, nad
            1. region d:400-605 [154482] picpiclink
          9. 2zit picpic
            automatically matched to d1ikpa2
            complexed with dde, nad
            1. region f:400-605 [154483] picpiclink
          10. 1zm9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ikpa2
            complexed with dde, p34
            1. region b:399-602 [125341] picpiclink
          11. 1zm9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ikpa2
            complexed with dde, p34
            1. region d:399-602 [125347] picpiclink
          12. 1zm9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ikpa2
            complexed with dde, p34
            1. region f:399-602 [125353] picpiclink
          13. 1zm4 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ikpa2
            complexed with dde, tad
            1. region b:399-602 [125321] picpiclink
          14. 1zm4 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ikpa2
            complexed with dde, tad
            1. region d:399-602 [125327] picpiclink
          15. 1zm4 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ikpa2
            complexed with dde, tad
            1. region f:399-602 [125333] picpiclink
          16. 1zm3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ikpa2
            complexed with dde
            1. region b:399-602 [125303] picpiclink
          17. 1zm3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ikpa2
            complexed with dde
            1. region d:399-602 [125309] picpiclink
          18. 1zm3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ikpa2
            complexed with dde
            1. region f:399-602 [125315] picpiclink
          19. 1zm2 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ikpa2
            complexed with apr, dde
            1. region b:399-602 [125285] picpiclink
          20. 1zm2 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ikpa2
            complexed with apr, dde
            1. region d:399-602 [125291] picpiclink
          21. 1zm2 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1ikpa2
            complexed with apr, dde
            1. region f:399-602 [125297] picpiclink
      4. Pertussis toxin, S1 subunit [56408]
        1. Bordetella pertussis [TaxId: 520] [56409] (3)
          1. 1prt picpicxrefxrefxrefxref
            1. chain a [42253] picpiclink
            2. chain g [42254] picpiclink
          2. 1bcp picpicxrefxrefxrefxref
            complexed with atp
            1. chain a [42255] picpiclink
            2. chain g [42256] picpiclink
          3. 1pto picpicxrefxrefxrefxref
            complexed with gal, sia
            1. chain a [42257] picpiclink
            2. chain g [42258] picpiclink
      5. Cholera toxin [56410]
        1. Vibrio cholerae [TaxId: 666] [56411] (9)
          1. 1s5d picpicxref
            complexed with gal, gol, na; mutant
            1. chain a [98541] picpiclink
          2. 2a5d picpicxref
            complexed with gol, gtp, mg, na; mutant
            1. region b:1-186 [144783] picpiclink
          3. 1s5e picpicxref
            complexed with gal, na
            1. chain a [98547] picpiclink
            2. chain b [98548] picpiclink
          4. 2a5f picpicxref
            automatically matched to 2A5D B:1-186
            complexed with gol, gtp, mg, na, nad; mutant
            1. region b:3-186 [144784] picpiclink
          5. 1s5b picpicxref
            complexed with na; mutant
            1. chain a [98529] picpiclink
          6. 2a5g picpicxref
            automatically matched to 2A5D B:1-186
            complexed with gtp, mg, na; mutant
            1. region b:1-186 [144785] picpiclink
          7. 1s5c picpicxref
            complexed with na; mutant
            1. chain a [98535] picpiclink
          8. 1s5f picpicxref
            complexed with gal, na
            1. chain a [98559] picpiclink
          9. 1xtc picpicxref
            1. chain a,c [42259] picpiclink
      6. Vegetative insecticidal protein 2 (VIP2) [56412]
        duplication: consists of two domains of this fold, the second of which is catalytic
        1. Bacillus cereus [TaxId: 1396] [56413] (2)
          1. 1qs1 picpic
            1. region a:60-264 [42260] picpiclink
            2. region a:265-461 [42261] picpiclink
            3. region b:1060-1264 [42262] picpiclink
            4. region b:1265-1461 [42263] picpiclink
            5. region c:2060-2264 [42264] picpiclink
            6. region c:2265-2461 [42265] picpiclink
            7. region d:3060-3264 [42266] picpiclink
            8. region d:3265-3461 [42267] picpiclink
          2. 1qs2 picpic
            1. region a:62-264 [42268] picpiclink
            2. region a:265-462 [42269] picpiclink
      7. Enzymatic component (Ia) of iota-toxin [82812]
        mammalian-targeted relative of VIP2; C-terminal domain is catalytic, N-terminal domain interacts with Ib (binding component)
        1. Clostridium perfringens [TaxId: 1502] [82813] (4)
          1. 1giq picpic
            complexed with nad
            1. region a:3-209 [76224] picpiclink
            2. region b:1003-1209 [76226] picpiclink
            3. region a:210-413 [76225] picpiclink
            4. region b:1210-1413 [76227] picpiclink
          2. 1gir picpic
            complexed with ndp
            1. region a:3-209 [76228] picpiclink
            2. region a:210-413 [76229] picpiclink
          3. 3buz picpic
            automatically matched to d1giqa1
            complexed with atp, ca, lar, tad
            1. region a:3-209 [155656] picpiclink
          4. 3buz picpic
            automatically matched to d1giqa2
            complexed with atp, ca, lar, tad
            1. region a:210-413 [155657] picpiclink
      8. Exoenzyme c3 [56414]
        1. Clostridium botulinum [TaxId: 1491] [56415] (14)
          SQ P15879 41-251
          1. 2c8a picpic
            automatically matched to d1g24a_
            complexed with nca, so4
            1. region a:45-251 [130099] picpiclink
          2. 2c8a picpic
            automatically matched to d1g24a_
            complexed with nca, so4
            1. region b:45-245 [130100] picpiclink
          3. 2c8a picpic
            automatically matched to d1g24a_
            complexed with nca, so4
            1. region c:45-251 [130101] picpiclink
          4. 2c8a picpic
            automatically matched to d1g24a_
            complexed with nca, so4
            1. region d:45-246 [130102] picpiclink
          5. 2a9k picpicxref
            automatically matched to d1g24a_
            complexed with gdp, mg, nad
            1. region b:45-251 [126443] picpiclink
          6. 1g24 picpic
            1. chain a [42270] picpiclink
            2. chain b [42271] picpiclink
            3. chain c [42272] picpiclink
            4. chain d [42273] picpiclink
          7. 2a78 picpicxref
            automatically matched to d1g24a_
            complexed with gdp, mg
            1. region b:45-251 [126330] picpiclink
          8. 2c89 picpic
            automatically matched to d1g24a_
            complexed with so4
            1. region a:45-244 [130095] picpiclink
          9. 2c89 picpic
            automatically matched to d1g24a_
            complexed with so4
            1. region b:45-246 [130096] picpiclink
          10. 2c89 picpic
            automatically matched to d1g24a_
            complexed with so4
            1. region c:45-251 [130097] picpiclink
          11. 2c89 picpic
            automatically matched to d1g24a_
            complexed with so4
            1. region d:45-244 [130098] picpiclink
          12. 1uzi picpic
            complexed with gol, v4o, vo4
            1. chain a [108176] picpiclink
            2. chain b [108177] picpiclink
          13. 1gzf picpic
            complexed with adp, nad, nir, so4
            1. chain a [76418] picpiclink
            2. chain b [76419] picpiclink
            3. chain c [76420] picpiclink
            4. chain d [76421] picpiclink
          14. 1gze picpic
            complexed with hg; mutant
            1. chain a [76414] picpiclink
            2. chain b [76415] picpiclink
            3. chain c [76416] picpiclink
            4. chain d [76417] picpiclink
        2. Staphylococcus aureus [TaxId: 1280] [103338] (2)
          1. 1ojq picpic
            1. chain a [93146] picpiclink
          2. 1ojz picpic
            complexed with nad
            1. chain a [93190] picpiclink
        3. Clostridium botulinum C bacteriophage [TaxId: 12336] [118161] (2)
          SQ Q00901 44-244
          1. 1r45 picpic
            complexed with gol, so4
            1. chain a [111683] picpiclink
            2. chain b [111684] picpiclink
            3. chain c [111685] picpiclink
            4. chain d [111686] picpiclink
          2. 1r4b picpic
            1. chain a [111687] picpiclink
            2. chain b [111688] picpiclink
      9. Anthrax toxin lethal factor, middle domain [69845]
        includes an all-alpha insert subdomain
        1. Bacillus anthracis [TaxId: 1392] [69846] (10)
          1. 1j7n picpicxref
            complexed with so4, zn
            1. region a:264-550 [66411] picpiclink
            2. region b:264-550 [66414] picpiclink
          2. 1yqy picpicxref
            automatically matched to d1j7na3
            complexed with 915, zn
            1. region a:265-550 [123904] picpiclink
          3. 1zxv picpicxrefxrefxrefxref
            automatically matched to d1j7na3
            complexed with mfm, zn
            1. region a:264-550 [125799] picpiclink
          4. 1zxv picpicxrefxrefxrefxref
            automatically matched to d1j7na3
            complexed with mfm, zn
            1. region b:264-550 [125802] picpiclink
          5. 1pwu picpicxref
            complexed with small molecule inhibitor
            complexed with gm6, zn; mutant
            1. region a:264-550 [95246] picpiclink
            2. region b:264-550 [95249] picpiclink
          6. 1pwp picpicxref
            complexed with small molecule inhibitor
            complexed with nsc, zn
            1. region a:264-550 [95234] picpiclink
            2. region b:264-550 [95237] picpiclink
          7. 1pwv picpicxref
            complexed with an optimized peptide substrate (chains C and D) in the presence of zinc
            1. region a:264-550 [95252] picpiclink
            2. region b:264-550 [95255] picpiclink
          8. 1pww picpicxref
            complexed with an optimized peptide substrate (chains C and D) in the presence of zinc
            complexed with zn; mutant
            1. region a:264-550 [95258] picpiclink
            2. region b:264-550 [95261] picpiclink
          9. 1pwq picpicxref
            complexed with small molecule inhibitor
            complexed with sd2, zn
            1. region a:264-550 [95240] picpiclink
            2. region b:264-550 [95243] picpiclink
          10. 1jky picpicxref
            1. region a:264-550 [66819] picpiclink
    2. Ecto-ART [82814] (1)
      the two disulfide bridges and N-terminal alpha helices are characteristic for all ecto-ARTs
      1. Eukaryotic mono-ADP-ribosyltransferase ART2.2 [82815]
        NAD glycohydrolase and auto-ADP-ribosylation activity
        1. Rat (Rattus norvegicus) [TaxId: 10116] [82816] (6)
          1. 1gxy picpic
            complexed with gol
            1. chain a [76380] picpiclink
            2. chain b [76381] picpiclink
          2. 1og1 picpic
            complexed with tad
            1. chain a [92862] picpiclink
          3. 1gxz picpic
            complexed with brt
            1. chain a [76382] picpiclink
            2. chain b [76383] picpiclink
          4. 1gy0 picpic
            1. chain a [76384] picpiclink
          5. 1og4 picpic
            complexed with nai; mutant
            1. chain a [92864] picpiclink
          6. 1og3 picpic
            complexed with nad; mutant
            1. chain a [92863] picpiclink
    3. Poly(ADP-ribose) polymerase, C-terminal domain [56416] (3)
      1. Poly(ADP-ribose) polymerase, C-terminal domain [56417]
        1. Chicken (Gallus gallus) [TaxId: 9031] [56418] (7)
          1. 1efy picpicxref
            complexed with bzc
            1. region a:797-1011 [42275] picpiclink
          2. 1a26 picpicxref
            complexed with cna
            1. region a:797-1012 [42274] picpiclink
          3. 2paw picpicxref
            1. region a:797-1009 [42279] picpiclink
          4. 2pax picpicxref
            complexed with 4an
            1. region a:797-1011 [42276] picpiclink
          5. 3pax picpicxref
            complexed with 3mb
            1. region a:797-1011 [42277] picpiclink
          6. 1pax picpicxref
            complexed with dhq
            1. region a:797-1011 [42278] picpiclink
          7. 4pax picpicxref
            complexed with nu1
            1. region a:797-1011 [42280] picpiclink
        2. Mouse (Mus musculus) [TaxId: 10090] [82817] (1)
          1. 1gs0 picpicxref
            1. region a:341-557 [76324] picpiclink
            2. region b:341-557 [76326] picpiclink
        3. Human (Homo sapiens) [TaxId: 9606] [103339] (8)
          SQ P09874 661-1010
          1. 2rd6 picpicxref
            automatically matched to d1uk0a2
            complexed with 78p
            1. region a:138-350 [151921] picpiclink
          2. 2rcw picpicxref
            automatically matched to d1uk0a2
            complexed with aai
            1. region a:138-350 [151912] picpiclink
          3. 1wok picpicxrefxrefxrefxref
            automatically matched to d1uk0a2
            complexed with cnq
            1. region a:799-1011 [121117] picpiclink
          4. 1wok picpicxrefxrefxrefxref
            automatically matched to d1uk0a2
            complexed with cnq
            1. region b:799-1011 [121119] picpiclink
          5. 1wok picpicxrefxrefxrefxref
            automatically matched to d1uk0a2
            complexed with cnq
            1. region c:799-1011 [121121] picpiclink
          6. 1wok picpicxrefxrefxrefxref
            automatically matched to d1uk0a2
            complexed with cnq
            1. region d:799-1011 [121123] picpiclink
          7. 1uk1 picpicxref
            complexed with frq
            1. region a:799-1011 [107902] picpiclink
            2. region b:799-1011 [107904] picpiclink
          8. 1uk0 picpicxref
            complexed with frm
            1. region a:138-350 [99478] picpiclink
            2. region b:138-350 [99480] picpiclink
    4. AvrPphF ORF2, a type III effector [111257] (1)
      shares the common structural core with other families; unknown function
      1. AvrPphF ORF2, a type III effector [111258]
        1. Pseudomonas syringae pv. phaseolicola [TaxId: 319] [111259] (1)
          SQ Q9K2L5 29-204
          1. 1s21 picpic
            mutant
            1. chain a [105222] picpiclink
    5. Tpt1/KptA [118162] (1)
      Pfam 01885; contains extra N-terminal domain similar to the "winged helix" DNA-binding domain (scop_sf 46785)
      1. Probable RNA 2'-phosphotransferase KptA [118163]
        1. Aeropyrum pernix [TaxId: 56636] [118164] (1)
          SQ Q9YFP5 37-216; d1: (1-76); d2: (88-182)
          1. 1wfx picpic
            Structural genomics target
            complexed with cl, zn
            1. chain a [114596] picpiclink
    6. BC2332-like [143947] (1)
      minimized common structural core with two large, mainly helical insertions on one side forming dimerization "domain"
      1. Hypothetical protein BC2332 [143948]
        1. Bacillus cereus [TaxId: 1396] [143949] (2)
          SQ Q81DM5 2-195
          1. 2aua picpic
            1. region a:2-195 [127326] picpiclink
          2. 2aua picpic
            automatically matched to 2AUA A:2-195
            1. region b:2-195 [127327] picpiclink
    7. CC0527-like [143950] (1)
      Pfam 06108; DUF952
      1. Hypothetical protein CC0527 [143951]
        1. Caulobacter crescentus [TaxId: 155892] [143952] (3)
          SQ Q9AAR9 2-114
          1. 2o0q picpic
            1. region a:2-114 [138867] picpiclink
          2. 2o0p picpic
            mutant
            1. region a:2-114 [138866] picpiclink
          3. 2jqn picpic
            automatically matched to d2o0qa1
            1. region a:2-114 [148180] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk