Structural Classification of Proteins
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Superfamily: C-type lectin-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: C-type lectin-like [56435]
    unusual fold
  4. Superfamily: C-type lectin-like [56436]
    link to SUPERFAMILY database - Superfamily

Families:

  1. C-type lectin domain [56437] (51)
    Pfam 00059
    1. Lithostathine, inhibitor of stone formation [56438]
      1. Human (Homo sapiens) [TaxId: 9606] [56439] (2) picpic
    2. Pancreatitis-associated protein 1 [103341]
      1. Human (Homo sapiens) [TaxId: 9606] [103342] (2) picpic
    3. CD94 [56440]
      1. Human (Homo sapiens) [TaxId: 9606] [56441] (7) picpic
    4. CD69 [56442]
      1. Human (Homo sapiens) [TaxId: 9606] [56443] (3) picpic
    5. NK cell-activating receptor nkg2d [64453]
      1. Mouse (Mus musculus) [TaxId: 10090] [64454] (2) picpic
      2. Human (Homo sapiens) [TaxId: 9606] [64455] (3) picpic
    6. Macrophage mannose receptor, CRD4 [56444]
      1. Human (Homo sapiens) [TaxId: 9606] [56445] (2) picpic
    7. Ovocleidin-17 [90059]
      major protein of the eggshell calcified layer
      1. Chicken (Gallus gallus) [TaxId: 9031] [90060] (1) picpic
    8. Galactose-specific C-type lectin [90061]
      1. Western diamondback rattlesnake (Crotalus atrox) [TaxId: 8730] [90062] (2) picpic
    9. Snake coagglutinin alpha chain [88861]
      heterodimeric coagulation factors IX/X-binding protein (IX/X-BP)
      1. Habu snake (Trimeresurus flavoviridis) [TaxId: 88087] [88862] (7) picpic
      2. Habu snake (Trimeresurus flavoviridis), flavocetin-A [TaxId: 88087] [88863] (1) picpic
      3. Jararaca (Bothrops jararaca), botrocetin [TaxId: 8724] [88864] (4) picpic
      4. Hundred-pace snake (Deinagkistrodon acutus), different isoforms [TaxId: 36307] [88865] (3) picpic
      5. Puff adder (Bitis arietans), bitiscetin [TaxId: 8692] [88866] (2) picpic
      6. Snake (Echis multisquamatus), Ems16 [TaxId: 93050] [103343] (2) picpic
        SQ Q7T2Q1 24-157
      7. South american rattlesnake (Crotalus durissus terrificus), convulxin [TaxId: 8732] [103344] (1) picpic
      8. Taiwan habu (Trimeresurus mucrosquamatus), mucrocetin [TaxId: 103944] [103345] (1) picpic
      9. Saw-scaled viper (Echis carinatus), echicetin [TaxId: 40353] [103346] (1) picpic
      10. Malayan pit viper (Calloselasma rhodostoma), rhodocetin [TaxId: 8717] [143953] (1) picpic
        SQ P81397 1-132
    10. Snake coagglutinin beta chain [88867]
      heterodimeric coagulation factors IX/X-binding protein (IX/X-BP)
      1. Habu snake (Trimeresurus flavoviridis) [TaxId: 88087] [88868] (7) picpic
      2. Habu snake (Trimeresurus flavoviridis), flavocetin-A [TaxId: 88087] [88869] (1) picpic
      3. Jararaca (Bothrops jararaca), botrocetin [TaxId: 8724] [88870] (4) picpic
      4. Sharp-nosed viper (Deinagkistrodon acutus) [TaxId: 36307] [88871] (3) picpic
      5. Puff adder (Bitis arietans), bitiscetin [TaxId: 8692] [88872] (2) picpic
      6. Snake (Echis multisquamatus), Ems16 [TaxId: 93050] [103347] (2) picpic
        SQ Q7T2Q0 27-153
      7. South american rattlesnake (Crotalus durissus terrificus), convulxin [TaxId: 8732] [103348] (1) picpic
      8. Taiwan habu (Trimeresurus mucrosquamatus), mucrocetin [TaxId: 103944] [103349] (1) picpic
      9. Saw-scaled viper (Echis carinatus), echicetin [TaxId: 40353] [103350] (1) picpic
      10. Malayan pit viper (Calloselasma rhodostoma), rhodocetin [TaxId: 8717] [143954] (1) picpic
        SQ P81398 2-128
    11. Type II antifreeze protein [56450]
      1. Sea raven (Hemitripterus americanus) [TaxId: 8094] [56451] (1) picpic
    12. Eosinophil major basic protein [64457]
      1. Human (Homo sapiens) [TaxId: 9606] [64458] (3) picpic
    13. NK cell receptor [56452]
      1. Mouse (Mus musculus), ly49-a [TaxId: 10090] [56453] (1) picpic
      2. Mouse (Mus musculus), ly49-c [TaxId: 10090] [103351] (7) picpic
      3. Mouse (Mus musculus), ly49-i [TaxId: 10090] [75582] (1) picpic
    14. H1 subunit of the asialoglycoprotein receptor [56454]
      1. Human (Homo sapiens) [TaxId: 9606] [56455] (1) picpic
    15. DC-SIGN (dendritic cell-specific ICAM-3 grabbing nonintegrin) [69855]
      1. Human (Homo sapiens) [TaxId: 9606] [69856] (6) picpic
        SQ Q9NNX6 253-384
    16. DC-SIGNR (DC-SIGN related receptor) [69857]
      1. Human (Homo sapiens) [TaxId: 9606] [69858] (4) picpic
        SQ Q9NNX6 219-397
    17. EBV gp42 [75583]
      1. Epstein-Barr virus [TaxId: 10376] [75584] (1) picpic
    18. E-selectin, C-lectin domain [56456]
      folowed by EGF-like module
      1. Human (Homo sapiens) [TaxId: 9606] [56457] (2) picpic
    19. P-selectin, C-lectin domain [116731]
      followed by EGF-like module
      1. Human (Homo sapiens) [TaxId: 9606] [116732] (3) picpic
    20. Mannose-binding protein A, C-lectin domain [56458]
      1. Human (Homo sapiens) [TaxId: 9606] [56459] (1) picpic
      2. Rat (Rattus norvegicus) [TaxId: 10116] [56460] (38) picpic
    21. Surfactant protein, lectin domain [56461]
      1. Human (Homo sapiens), SP-D [TaxId: 9606] [56462] (36) picpic
      2. Rat (Rattus norvegicus), SP-A [TaxId: 10116] [103352] (2) picpic
    22. Lectin TC14 [56463]
      1. Tunicate (Polyandrocarpa misakiensis) [TaxId: 7723] [56464] (2) picpic
    23. Tetranectin [56465]
      trimeric plasminogen binding protein with an alpha-helical coiled coil
      1. Human (Homo sapiens) [TaxId: 9606] [56466] (3) picpic
        SQ P05452 85-202
    24. Aggrecan core protein [111260]
      1. Rat (Rattus norvegicus) [TaxId: 10116] [111261] (1) picpic
        SQ P07897 1912-2037
    25. Lectin CEL-I [111262]
      1. Cucumaria echinata [TaxId: 40245] [111263] (2) picpic
        SQ Q7M462
    26. Hypothetical protein F28B4.3 [118166]
      1. Caenorhabditis elegans [TaxId: 6239] [118167] (1) picpic
        SQ Q19853 1193-1329
    27. Oxidised low density lipoprotein [143955]
      1. Human (Homo sapiens) [TaxId: 9606] [143956] (16) picpic
        SQ P78380 140-270
    28. Low affinity immunoglobulin epsilon Fc receptor [143957]
      1. Human (Homo sapiens) [TaxId: 9606] [143958] (2) picpic
        SQ P06734 156-298
  2. Aerolysin/Pertussis toxin (APT) domain [56467] (2)
    1. Pertussis toxin, S2/S3 subunits, N-terminal domain [56468]
      1. Bordetella pertussis [TaxId: 520] [56469] (3) picpic
    2. Proaerolysin, N-terminal domain [56470]
      1. Aeromonas hydrophila [TaxId: 644] [56471] (9) picpic
  3. Invasin/intimin cell-adhesion fragment, C-terminal domain [56472] (2)
    1. Intimin [56473]
      1. Escherichia coli [TaxId: 562] [56474] (3) picpic
        an enteropathogenic serotype
    2. Invasin [56475]
      1. Yersinia pseudotuberculosis [TaxId: 633] [56476] (1) picpic
  4. Link domain [56477] (2)
    1. TSG-6, Link module [56478]
      1. Human (Homo sapiens) [TaxId: 9606] [56479] (7) picpic
    2. CD44, hyaluronan binding domain [103353]
      contains extra N-terminal beta-strand and C-terminal beta-hairpin
      1. Human (Homo sapiens) [TaxId: 9606] [103354] (3) picpic
  5. Endostatin [56480] (3)
    decorated with many insertions in the common fold
    1. Endostatin [56481]
      1. Human (Homo sapiens) [TaxId: 9606] [56482] (1) picpic
      2. Mouse (Mus musculus) [TaxId: 10090] [56483] (3) picpic
    2. Endostatin domain of collagen alpha1(xv) [56484]
      1. Mouse (Mus musculus) [TaxId: 10090] [56485] (1) picpic
  6. Noncollagenous (NC1) domain of collagen IV [75585] (2)
    duplication: consists of two subdomains of this fold; segment swapping within and between individual domains
    1. Noncollagenous (NC1) domain of collagen IV [75586]
      1. Human (Homo sapiens) [TaxId: 9606] [75587] (1) picpic
      2. Cow (Bos taurus) [TaxId: 9913] [82820] (3) picpic
        SQ P02462 1445-1667
  7. Sulfatase-modifying factor-like [143959] (2)
    Pfam 03781 (DUF323); fold decorated with many additional structures; C-alpha-formyglycine-generating enzyme
    1. Sulfatase modifying factor 1 [143960]
      1. Human (Homo sapiens) [TaxId: 9606] [143961] (14) picpic
        SQ Q8NBK3 86-371
    2. Sulfatase modifying factor 2 [143962]
      1. Human (Homo sapiens) [TaxId: 9606] [143963] (2) picpic
        SQ Q8NBJ7 28-294
  8. Mtd variable domain [143964] (1)
    fold decorated with many additional structures; overall similarity to the Sulfatase modifying factor family; lacks the characteristic disulfide
    1. Major tropism determinant (Mtd), C-terminal domain [143965]
      1. Bordetella phage bpp-1 [TaxId: 194699] [143966] (13) picpic
        SQ Q775D6 171-380
        includes related Bordetella phage proteins
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk