Structural Classification of Proteins
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Superfamily: ssDNA-binding transcriptional regulator domain

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: ssDNA-binding transcriptional regulator domain [54446]
    helix-swapped dimer of beta(4)-alpha motifs
  4. Superfamily: ssDNA-binding transcriptional regulator domain [54447]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Transcriptional coactivator PC4 C-terminal domain [54448] (1)
    dimer of two separate motifs
    1. Transcriptional coactivator PC4 C-terminal domain [54449]
      1. Human (Homo sapiens) [TaxId: 9606] [54450] (5)
        1. 1pcf picpic
          1. chain a [38142] picpiclink
          2. chain b [38143] picpiclink
          3. chain c [38144] picpiclink
          4. chain d [38145] picpiclink
          5. chain e [38146] picpiclink
          6. chain f [38147] picpiclink
          7. chain g [38148] picpiclink
          8. chain h [38149] picpiclink
        2. 2c62 picpic
          automatically matched to d1pcfa_
          complexed with so4
          1. region a:62-127 [129967] picpiclink
        3. 2c62 picpic
          automatically matched to d1pcfa_
          complexed with so4
          1. region b:62-127 [129968] picpiclink
        4. 2phe picpic
          automatically matched to d1pcfa_
          mutant
          1. region a:61-126 [139692] picpiclink
        5. 2phe picpic
          automatically matched to d1pcfa_
          mutant
          1. region b:61-126 [139693] picpiclink
  2. Plant transcriptional regulator PBF-2 [75375] (1)
    single-chain domain formed by a tandem repeat of two motifs
    1. Plant transcriptional regulator PBF-2 [75376]
      1. Potato (Solanum tuberosum) [TaxId: 4113] [75377] (1)
        1. 1l3a picpic
          1. chain a [73531] picpiclink
          2. chain b [73532] picpiclink
          3. chain c [73533] picpiclink
          4. chain d [73534] picpiclink
  3. PMN2A0962/syc2379c-like [143038] (2)
    Pfam 08848; DUF1818; specific to cyanobacteria; single-chain domain made of two repeats of this structural motif
    1. Hypothetical protein PMN2A_0962 [143039]
      1. Prochlorococcus marinus [TaxId: 1219] [143040] (4)
        SQ Q46J75 1-122
        1. 2it9 picpic
          complexed with cl, edo, pge, trs
          1. region a:1-122 [137634] picpiclink
        2. 2it9 picpic
          automatically matched to 2IT9 A:1-122
          complexed with cl, edo, pge, trs
          1. region b:1-120 [137635] picpiclink
        3. 2it9 picpic
          automatically matched to 2IT9 A:1-122
          complexed with cl, edo, pge, trs
          1. region c:1-120 [137636] picpiclink
        4. 2it9 picpic
          automatically matched to 2IT9 A:1-122
          complexed with cl, edo, pge, trs
          1. region d:1-122 [137637] picpiclink
    2. Hypothetical protein syc2379_c [143041]
      1. Synechococcus sp. pcc 7942 [TaxId: 1140] [143042] (1)
        SQ Q5MZF1 1-121
        1. 2nvn picpic
          complexed with gol
          1. region a:1-121 [138633] picpiclink
  4. Guide RNA binding protein gBP [143043] (2)
    includes PfamB 080318 and PB073991; forms heterooligomers; similar subunit and oligomeric structures to the Plant transcriptional regulator family
    1. GBP21 [143044]
      Mitochondrial RNA binding protein 1, MRP1
      1. Trypanosoma brucei [TaxId: 5691] [143045] (7)
        SQ P90629 28-173
        1. 2gia picpicxrefxref
          complexed with acy
          1. region b:28-173 [135222] picpiclink
        2. 2gia picpicxrefxref
          automatically matched to 2GIA B:28-173
          complexed with acy
          1. region d:28-173 [135223] picpiclink
        3. 2gid picpicxrefxrefxrefxref
          automatically matched to 2GIA B:28-173
          1. region b:28-173 [135233] picpiclink
        4. 2gid picpicxrefxrefxrefxref
          automatically matched to 2GIA B:28-173
          1. region d:28-173 [135234] picpiclink
        5. 2gid picpicxrefxrefxrefxref
          automatically matched to 2GIA B:28-173
          1. region j:28-173 [135237] picpiclink
        6. 2gid picpicxrefxrefxrefxref
          automatically matched to 2GIA B:28-173
          1. region k:28-173 [135238] picpiclink
        7. 2gje picpic
          automatically matched to 2GIA B:28-173
          1. region d:28-173 [135282] picpiclink
    2. Guide RNA binding protein gBP25 [143046]
      Mitochondrial RNA-binding protein 2, MRP2
      1. Trypanosoma brucei [TaxId: 5691] [143047] (6)
        SQ Q952G2 56-221
        1. 2gia picpicxrefxref
          complexed with acy
          1. region a:56-221 [135221] picpiclink
        2. 2gia picpicxrefxref
          automatically matched to 2GIA A:56-221
          complexed with acy
          1. region g:56-221 [135224] picpiclink
        3. 2gid picpicxrefxrefxrefxref
          automatically matched to 2GIA A:56-221
          1. region a:60-221 [135232] picpiclink
        4. 2gid picpicxrefxrefxrefxref
          automatically matched to 2GIA A:56-221
          1. region g:59-221 [135235] picpiclink
        5. 2gid picpicxrefxrefxrefxref
          automatically matched to 2GIA A:56-221
          1. region h:59-221 [135236] picpiclink
        6. 2gid picpicxrefxrefxrefxref
          automatically matched to 2GIA A:56-221
          1. region p:59-221 [135239] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk