Structural Classification of Proteins
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Superfamily: PriA/YqbF domain

associated with known or presumed DNA-binding domains; this superfamily also includes the C-terminal domain of PriA (PDB entry 1zt2)

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: GINS/PriA/YqbF domain [160058]
    beta(4)-alpha-beta; 3-stranded antiparallel beta-sheet (strands 4,1 and 5) are covered on the same side by the helix and beta hairpin of strands 2 and 3; similarity to the L9 N-domain-like fold (scop_cf 55657) and the PsaD fold (scop_sf 64243)
  4. Superfamily: PriA/YqbF domain [160059]
    associated with known or presumed DNA-binding domains; this superfamily also includes the C-terminal domain of PriA (PDB entry 1zt2)

Families:

  1. YqbF N-terminal domain-like [160060] (2)
    1. Hypothetical protein YqbF [160061]
      1. Bacillus subtilis [TaxId: 1423] [160062] (1)
        SQ P45922 1-49
        1. 2hjq picpicxref
          1. region a:1-49 [147297] picpiclink
    2. Mu-like prophage FluMu protein gp35, HI1506 [160063]
      1. Haemophilus influenzae [TaxId: 727] [160064] (1)
        SQ P44228 1-67
        1. 2out picpicxref
          1. region a:4-70 [149028] picpiclink
  2. PSF2 N-terminal domain-like [160065] (1)
    N-terminal part of Pfam 04128
    1. DNA replication complex GINS protein PSF2 [160066]
      1. Human (Homo sapiens) [TaxId: 9606] [160067] (7)
        SQ Q9Y248 1-61
        1. 2e9x picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2EHO C:1-61
          complexed with so4
          1. region b:1-61 [146741] picpiclink
        2. 2e9x picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2EHO C:1-61
          complexed with so4
          1. region f:1-61 [146748] picpiclink
        3. 2q9q picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2EHO C:1-61
          1. region a:1-61 [150157] picpiclink
        4. 2q9q picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2EHO C:1-61
          1. region e:1-61 [150163] picpiclink
        5. 2eho picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with so4
          1. region c:1-61 [146847] picpiclink
        6. 2eho picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2EHO C:1-61
          complexed with so4
          1. region g:1-61 [146853] picpiclink
        7. 2eho picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2EHO C:1-61
          complexed with so4
          1. region k:1-61 [146859] picpiclink
  3. SLD5 C-terminal domain-like [160068] (1)
    C-terminal part of Pfam 05916
    1. GINS complex subunit 4, SLD5 [160069]
      1. Human (Homo sapiens) [TaxId: 9606] [160070] (4)
        SQ Q9BRT9 166-223
        1. 2e9x picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with so4
          1. region d:166-223 [146745] picpiclink
        2. 2e9x picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2E9X D:166-223
          complexed with so4
          1. region h:166-223 [146752] picpiclink
        3. 2q9q picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2E9X D:166-223
          1. region b:166-222 [150159] picpiclink
        4. 2q9q picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2E9X D:166-223
          1. region f:166-222 [150165] picpiclink
  4. PSF3 N-terminal domain-like [160071] (1)
    N-terminal part of Pfam 06425
    1. GINS complex subunit 3, PSF3 [160072]
      1. Human (Homo sapiens) [TaxId: 9606] [160073] (7)
        SQ Q9BRX5 1-87
        1. 2e9x picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with so4
          1. region c:1001-1087 [146743] picpiclink
        2. 2e9x picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2E9X C:1001-1087
          complexed with so4
          1. region g:1-87 [146750] picpiclink
        3. 2q9q picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2E9X C:1001-1087
          1. region d:2-87 [150161] picpiclink
        4. 2q9q picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2E9X C:1001-1087
          1. region h:2-87 [150167] picpiclink
        5. 2eho picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2E9X C:1001-1087
          complexed with so4
          1. region d:3-87 [146849] picpiclink
        6. 2eho picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2E9X C:1001-1087
          complexed with so4
          1. region h:3-87 [146855] picpiclink
        7. 2eho picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2E9X C:1001-1087
          complexed with so4
          1. region l:3-87 [146861] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
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