Structural Classification of Proteins
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Superfamily: UBC-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: UBC-like [54494]
    alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2
  4. Superfamily: UBC-like [54495]
    link to SUPERFAMILY database - Superfamily

Families:

  1. UBC-related [54496] (38)
    1. Ubiquitin conjugating enzyme, UBC [54497]
      1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [54498] (1) picpic
      2. Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932] [69685] (3) picpic
        SQ P21734
      3. Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932] [54499] (1) picpic
      4. Baker's yeast (Saccharomyces cerevisiae), ubc4 [TaxId: 4932] [54500] (1) picpic
      5. Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932] [54501] (1) picpic
      6. Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932] [64239] (3) picpic
      7. Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932] [64241] (2) picpic
      8. Human (Homo sapiens), ubc13 [TaxId: 9606] [64240] (5) picpic
      9. Human (Homo sapiens), mms2 [TaxId: 9606] [64242] (3) picpic
      10. Human (Homo sapiens), ubch7 [TaxId: 9606] [54502] (2) picpic
      11. Human (Homo sapiens), ubc9 [TaxId: 9606] [54503] (12) picpic
        identical sequence in many other species
      12. Human (Homo sapiens), ubch10 [TaxId: 9606] [64243] (1) picpic
      13. Human (Homo sapiens), ubc2b [TaxId: 9606] [102840] (1) picpic
        E2-17 kDa
      14. Human (Homo sapiens), ubch5b [TaxId: 9606] [102841] (14) picpic
        SQ P62837
        E2-17 kDa 2
      15. Clam (Spisula solidissima), E-2C [TaxId: 6584] [54504] (1) picpic
      16. Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239] [89862] (1) picpic
      17. Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239] [102842] (2) picpic
      18. Human (Homo sapiens), ubch8 [TaxId: 9606] [117850] (1) picpic
        SQ Q96LR5 54-201
      19. Human(Homo sapiens), E2 S [TaxId: 9606] [143048] (2) picpic
        SQ Q16763 6-156
      20. Leishmania major [TaxId: 5664] [143049] (3) picpic
        SQ Q4Q5L3 9-166
        Ubiquitin carrier protein 4, putative
      21. Human (Homo sapiens), E2 J2 [TaxId: 9606] [143050] (2) picpic
        SQ Q5T7L1 12-168
        ubc6 homologue
      22. Human (Homo sapiens), E2 variant 1 [TaxId: 9606] [143051] (5) picpic
        SQ Q13404 80-221! SQ Q13404 82-220
      23. Human (Homo sapiens), E2 L6 [TaxId: 9606] [143052] (3) picpic
        SQ O14933 2-151
      24. Human (Homo sapiens), E2 U [TaxId: 9606] [143053] (1) picpic
        SQ Q5VVX9 1-148
      25. Human (Homo sapiens), E2 D3 [TaxId: 9606] [143054] (5) picpic
        SQ P61077 1-147
      26. Human (Homo sapiens), E2 H [TaxId: 9606] [143055] (2) picpic
        SQ P62256 4-155
      27. Human (Homo sapiens), E2 G1 [TaxId: 9606] [143056] (1) picpic
        SQ P62253 7-131
      28. Human (Homo sapiens), E2 T [TaxId: 9606] [143057] (1) picpic
        SQ Q9NPD8 1-154
        Hspc150
      29. Human (Homo sapiens), E2 M [TaxId: 9606] [143058] (2) picpic
        SQ P61081 27-183
        the extra N-terminal peptide, bound to the heterodimeric E1 enzyme for NEDD8, can be seen in the PDB entry 1tt5, chains E and F
      30. Toxoplasma gondii [TaxId: 5811] [143059] (1) picpic
      31. Caenorhabditis elegans, E2 2 [TaxId: 6239] [143060] (1) picpic
        SQ P35129 1-147
      32. Xenopus laevis [TaxId: 8355] [160080] (1) picpic
    2. Ubiquitin-protein ligase W (E2 W) [143061]
      forms segment-swapped dimer
      1. Human (Homo sapiens) [TaxId: 9606] [143062] (2) picpic
        SQ Q96B02 1-117
    3. Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain [143063]
      ubc1 homologue; also contains the C-terminal UBA domain
      1. Human (Homo sapiens) [TaxId: 9606] [143064] (5) picpic
        SQ P61086 1-156
      2. Cow (Bos taurus) [TaxId: 9913] [143065] (2) picpic
        SQ P61085 1-154
    4. Hypothetical protein Tgtwinscan_2721, E2 domain [143066]
      1. Toxoplasma gondii [TaxId: 5811] [143067] (2) picpic
    5. Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain [143068]
      this proteins contains the N-terminal RWD domain
      1. Human (Homo sapiens) [TaxId: 9606] [143069] (1) picpic
        SQ Q8WVN8 201-362
    6. Putative ubiquitin-conjugating enzyme, E2 domain [143070]
      1. Plasmodium chabaudi [TaxId: 5825] [143071] (1) picpic
        SQ Q4Y037 88-196
  2. UEV domain [75383] (2)
    1. Tumor susceptibility gene 101 (TSG101) [75384]
      1. Human (Homo sapiens) [TaxId: 9606] [75385] (7) picpic
    2. Vacuolar protein sorting-associated [102843]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [102844] (1) picpic
  3. RWD domain [110843] (4)
    Pfam 05773
    1. EIF2-alpha kinase 4 (GCN2-like protein) [110844]
      1. Mouse (Mus musculus) [TaxId: 10090] [110845] (1) picpic
        SQ Q9QZ05 17-139
    2. E3 ubiquitin-protein ligase RNF25 [160081]
      RING finger protein 25
      1. Human (Homo sapiens) [TaxId: 9606] [160082] (2) picpic
        SQ Q96BH1 10-125! SQ Q96BH1 10-134
    3. Uncharacterized protein C21orf6 [160083]
      1. Human (Homo sapiens) [TaxId: 9606] [160084] (1) picpic
        SQ P57060 34-173
    4. RWD domain-containing protein 2 [160085]
      1. Human (Homo sapiens) [TaxId: 9606] [160086] (1) picpic
        SQ Q9UIY3 1-141
  4. UFC1-like [143072] (1)
    1. Ufm1-conjugating enzyme 1, UFC1 [143073]
      aka cgi-126
      1. Human (Homo sapiens) [TaxId: 9606] [143074] (3) picpic
        SQ Q9Y3C8 1-167
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk