Structural Classification of Proteins
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Fold: GFP-like

beta-sheet folds into a barrel (n=11, S=14) around the central helix

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: GFP-like [54510]
    beta-sheet folds into a barrel (n=11, S=14) around the central helix

Superfamilies:

  1. GFP-like [54511] (2)
    link to SUPERFAMILY database - Superfamily
    1. Fluorescent proteins [54512] (6)
      1. Green fluorescent protein, GFP [54513]
        1. Jellyfish (Aequorea victoria) [TaxId: 6100] [54514] (53)
          SQ P42212
          1. 1oxd picpic
            "gold" class of GFP; cyan fluorescent protein
            complexed with nyc; mutant
            1. chain a [93687] picpiclink
          2. 1oxe picpic
            "gold" class of GFP; cyan fluorescent protein
            complexed with nyc; mutant
            1. chain a [93688] picpiclink
          3. 1kyp picpic
            Zn biosensor, apo form
            complexed with crg, mo6; mutant
            1. chain a [73280] picpiclink
          4. 1q4e picpic
            complexed with cro; mutant
            1. chain a [95788] picpiclink
          5. 1kys picpic
            Zn biosensor, Zn-bound form
            complexed with crg, zn, zn3; mutant
            1. chain a [73288] picpiclink
          6. 1q4a picpic
            complexed with cro; mutant
            1. chain a [95784] picpiclink
          7. 1qyf picpic
            complexed with cro, egl, mo5; mutant
            1. chain a [96588] picpiclink
          8. 1kyr picpic
            Zn biosensor, Cu-bound form
            complexed with crg, cu, mg; mutant
            1. chain a [73287] picpiclink
          9. 1h6r picpic
            a redox sensitive variant
            complexed with cl, pia; mutant
            1. chain a [65683] picpiclink
            2. chain b [65684] picpiclink
            3. chain c [65685] picpiclink
          10. 1s6z picpic
            complexed with cl, cr0; mutant
            1. chain a [98613] picpiclink
          11. 1q4c picpic
            complexed with cro; mutant
            1. chain a [95786] picpiclink
          12. 1q4b picpic
            complexed with cro; mutant
            1. chain a [95785] picpiclink
          13. 1jbz picpic
            a dual-wavelength emission variant
            complexed with cro, edo, mg; mutant
            1. chain a [77103] picpiclink
          14. 1q73 picpic
            complexed with cro; mutant
            1. chain a [96018] picpiclink
          15. 1q4d picpic
            complexed with cro; mutant
            1. chain a [95787] picpiclink
          16. 1oxf picpic
            "gold" class of GFP; cyan fluorescent protein
            complexed with 4in, 5za
            1. chain a [93689] picpiclink
          17. 1qyo picpic
            mutant
            1. chain a [96601] picpiclink
          18. 1rmo picpic
            complexed with 32t, cro
            1. chain a [105016] picpiclink
          19. 1qyq picpic
            complexed with cr5; mutant
            1. chain a [96602] picpiclink
          20. 1qy3 picpic
            mutant
            1. chain a [96570] picpiclink
          21. 1hcj picpic
            Photoproduct of the wild-type GFP
            complexed with csy; mutant
            1. chain a [65792] picpiclink
            2. chain b [65793] picpiclink
            3. chain c [65794] picpiclink
            4. chain d [65795] picpiclink
          22. 1huy picpic
            citrine, an improved yellow-emission variant
            complexed with cro; mutant
            1. chain a [61280] picpiclink
          23. 1rmm picpic
            complexed with 32s, cro
            1. chain a [105015] picpiclink
          24. 1ema picpic
            complexed with cro; mutant
            1. chain a [38339] picpiclink
          25. 1qxt picpic
            mutant
            1. chain a [96562] picpiclink
          26. 2emd picpic
            complexed with csh; mutant
            1. chain a [38340] picpiclink
          27. 1emg picpic
            complexed with cro; mutant
            1. chain a [38346] picpiclink
          28. 1gfl picpic
            mutant
            1. chain a [38341] picpiclink
            2. chain b [38342] picpiclink
          29. 1jby picpic
            a dual-wavelength emission variant
            complexed with cro; mutant
            1. chain a [77102] picpiclink
          30. 1myw picpic
            yellow-emission variant
            complexed with cr2; mutant
            1. chain a [79678] picpiclink
          31. 1rrx picpic
            complexed with mfc, yof
            1. chain a [105085] picpiclink
          32. 1emb picpic
            complexed with cro; mutant
            1. chain a [38344] picpiclink
          33. 1emk picpic
            complexed with ccy; mutant
            1. chain a [38343] picpiclink
          34. 1bfp picpic
            blue-emission variant
            complexed with iic; mutant
            1. chain a [38345] picpiclink
          35. 1emc picpic
            complexed with csy; mutant
            1. chain a [38352] picpiclink
            2. chain b [38353] picpiclink
            3. chain c [38354] picpiclink
            4. chain d [38355] picpiclink
          36. 1emf picpic
            complexed with csh; mutant
            1. chain a [38349] picpiclink
          37. 1emm picpic
            complexed with csy; mutant
            1. chain a [38348] picpiclink
          38. 2emn picpic
            complexed with csh; mutant
            1. chain a [38351] picpiclink
          39. 1kp5 picpic
            cyclic variant with linked natural termini
            complexed with csy, so4; mutant
            1. chain a [72842] picpiclink
            2. chain b [72843] picpiclink
          40. 1eml picpic
            complexed with csy; mutant
            1. chain a [38350] picpiclink
          41. 1jc1 picpic
            complexed with cro; mutant
            1. chain a [90888] picpiclink
            2. chain b [90889] picpiclink
            3. chain c [90890] picpiclink
          42. 1eme picpic
            complexed with csy; mutant
            1. chain a [38357] picpiclink
          43. 1b9c picpic
            complexed with cro; mutant
            1. chain a [38358] picpiclink
            2. chain b [38359] picpiclink
            3. chain c [38360] picpiclink
            4. chain d [38361] picpiclink
          44. 1yfp picpic
            yellow-emission variant
            complexed with cro; mutant
            1. chain a [38362] picpiclink
            2. chain b [38363] picpiclink
          45. 1f0b picpic
            complexed with cro; mutant
            1. chain a [38347] picpiclink
          46. 1c4f picpic
            complexed with cro; mutant
            1. chain a [38365] picpiclink
          47. 1f09 picpic
            complexed with cro, iod; mutant
            1. chain a [38356] picpiclink
          48. 2yfp picpic
            yellow-emission variant
            complexed with cro; mutant
            1. chain a [38364] picpiclink
          49. 1jc0 picpic
            complexed with cro; mutant
            1. chain a [90885] picpiclink
            2. chain b [90886] picpiclink
            3. chain c [90887] picpiclink
          50. 1rm9 picpic
            complexed with 4f3, 4fw
            1. chain a [105012] picpiclink
          51. 1cv7 picpic
            complexed with crf; mutant
            1. chain a [90428] picpiclink
          52. 2emo picpic
            complexed with csh; mutant
            1. chain a [38366] picpiclink
          53. 1rmp picpic
            complexed with 23s, cro
            1. chain a [105017] picpiclink
        2. Renilla reniformis [TaxId: 6136] [160126] (4)
          SQ Q963I9 7-226
          1. 2rh7 picpic
            complexed with cro
            1. region a:7-226 [152030] picpiclink
          2. 2rh7 picpic
            automatically matched to 2RH7 A:7-226
            complexed with cro
            1. region b:7-226 [152031] picpiclink
          3. 2rh7 picpic
            automatically matched to 2RH7 A:7-226
            complexed with cro
            1. region c:7-226 [152032] picpiclink
          4. 2rh7 picpic
            automatically matched to 2RH7 A:7-226
            complexed with cro
            1. region d:7-226 [152033] picpiclink
      2. Red fluorescent protein (fp583 or dsred(clontech)) [54515]
        1. Coral (Discosoma sp.) [TaxId: 86600] [54516] (2)
          1. 1ggx picpic
            complexed with crq
            1. chain a [38367] picpiclink
            2. chain b [38368] picpiclink
            3. chain c [38369] picpiclink
            4. chain d [38370] picpiclink
          2. 1g7k picpic
            complexed with crq; mutant
            1. chain a [38371] picpiclink
            2. chain b [38372] picpiclink
            3. chain c [38373] picpiclink
            4. chain d [38374] picpiclink
      3. Red fluorescent protein fp61 [102854]
        1. Sea anemone (Entacmaea quadricolor) [TaxId: 6118] [102855] (1)
          1. 1uis picpic
            complexed with acy, ca, nrq
            1. chain a [99431] picpiclink
            2. chain b [99432] picpiclink
      4. Pocilloporin pigment Rtms5 [89866]
        1. Coral (Montipora efflorescens) [TaxId: 105610] [89867] (2)
          1. 1mou picpic
            complexed with crq, iod
            1. chain a [85037] picpiclink
          2. 1mov picpic
            complexed with crq, iod; mutant
            1. chain a [85038] picpiclink
      5. GFP-like non-fluorescent chromoprotein FP595 [117863]
        1. Anemonia sulcata [TaxId: 6108] [117864] (1)
          SQ Q9GZ28 # 95% sequence identity
          1. 1xqm picpic
            complexed with acy, ch6
            1. chain a [115851] picpiclink
    2. Domain G2 of nidogen-1 [64244] (1)
      1. Domain G2 of nidogen-1 [64245]
        1. Mouse (Mus musculus) [TaxId: 10090] [64246] (2)
          1. 1gl4 picpicxrefxref
            complexed with epe, zn
            1. region a:399-631 [65286] picpiclink
          2. 1h4u picpicxref
            mutant
            1. region a:399-631 [60622] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk