Structural Classification of Proteins
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Fold: YefM-like

core: beta-alpha(2)-beta(2)-alpha; mixed beta-sheet, order:123, strands 1 and 2 are parallel; forms compact dimer with a single beta-sheet;

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: YefM-like [143119]
    core: beta-alpha(2)-beta(2)-alpha; mixed beta-sheet, order:123, strands 1 and 2 are parallel; forms compact dimer with a single beta-sheet;

Superfamilies:

  1. YefM-like [143120] (1)
    link to SUPERFAMILY database - Superfamily
    1. YefM-like [143121] (2)
      antitoxin component of the YefM/YoeB-like system; binds to the toxin component wia extra C-terminal tail, unstructured in the free state, but adopting a RelB-like conformation in the bound state
      1. Antitoxin YefM [143122]
        1. Escherichia coli [TaxId: 562] [143123] (4)
          SQ P69346 1-55! SQ P69346 1-83
          1. 2a6q picpicxrefxref
            1. region a:10-92 [126293] picpiclink
          2. 2a6q picpicxrefxref
            1. region b:10-64 [126294] picpiclink
          3. 2a6q picpicxrefxref
            automatically matched to 2A6Q A:10-92
            1. region c:10-92 [126295] picpiclink
          4. 2a6q picpicxrefxref
            automatically matched to 2A6Q B:10-64
            1. region d:10-64 [126296] picpiclink
      2. Hypothetical protein NE2111 [143124]
        1. Nitrosomonas europaea [TaxId: 915] [143125] (4)
          SQ Q82T22 1-51
          1. 2odk picpic
            complexed with gol, so4
            1. region a:1-51 [139030] picpiclink
          2. 2odk picpic
            automatically matched to 2ODK A:1-51
            complexed with gol, so4
            1. region b:2-51 [139031] picpiclink
          3. 2odk picpic
            automatically matched to 2ODK A:1-51
            complexed with gol, so4
            1. region c:1-51 [139032] picpiclink
          4. 2odk picpic
            automatically matched to 2ODK A:1-51
            complexed with gol, so4
            1. region d:1-51 [139033] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk