Structural Classification of Proteins
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Family: PaaI/YdiI-like

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Thioesterase/thiol ester dehydrase-isomerase [54636]
    core: beta-alpha-beta(4); 2 layers: alpha/beta
  4. Superfamily: Thioesterase/thiol ester dehydrase-isomerase [54637]
    link to SUPERFAMILY database - Superfamily
  5. Family: PaaI/YdiI-like [89902]

Protein Domains:

  1. Phenylacetic acid degradation protein PaaI [89903]
    1. Escherichia coli [TaxId: 562] [89904] (3)
      1. 2fs2 picpic
        complexed with so4
        1. region a:1-131 [134003] picpiclink
      2. 2fs2 picpic
        automatically matched to 2FS2 A:1-131
        complexed with so4
        1. region b:1-131 [134004] picpiclink
      3. 1psu picpic
        structural genomics
        complexed with mse
        1. chain a [88285] picpiclink
        2. chain b [88286] picpiclink
    2. Thermus thermophilus [TaxId: 274] [102909] (26)
      1. 1wlu picpic
        automatically matched to d1j1ya_
        complexed with cl, gol
        1. region a:2-117 [121015] picpiclink
      2. 1j1y picpic
        complexed with cl, mg
        1. chain a [90776] picpiclink
        2. chain b [90777] picpiclink
      3. 1wlv picpic
        automatically matched to d1j1ya_
        complexed with act, cl, coa
        1. region a:2-117 [121016] picpiclink
      4. 1wlv picpic
        automatically matched to d1j1ya_
        complexed with act, cl, coa
        1. region b:2-117 [121017] picpiclink
      5. 1wlv picpic
        automatically matched to d1j1ya_
        complexed with act, cl, coa
        1. region c:3-117 [121018] picpiclink
      6. 1wlv picpic
        automatically matched to d1j1ya_
        complexed with act, cl, coa
        1. region d:3-117 [121019] picpiclink
      7. 1wlv picpic
        automatically matched to d1j1ya_
        complexed with act, cl, coa
        1. region e:3-117 [121020] picpiclink
      8. 1wlv picpic
        automatically matched to d1j1ya_
        complexed with act, cl, coa
        1. region f:3-117 [121021] picpiclink
      9. 1wlv picpic
        automatically matched to d1j1ya_
        complexed with act, cl, coa
        1. region g:3-117 [121022] picpiclink
      10. 1wlv picpic
        automatically matched to d1j1ya_
        complexed with act, cl, coa
        1. region h:2-117 [121023] picpiclink
      11. 1wn3 picpic
        automatically matched to d1j1ya_
        complexed with act, cl, hxc
        1. region a:2-117 [121074] picpiclink
      12. 1wn3 picpic
        automatically matched to d1j1ya_
        complexed with act, cl, hxc
        1. region b:2-117 [121075] picpiclink
      13. 1wn3 picpic
        automatically matched to d1j1ya_
        complexed with act, cl, hxc
        1. region c:3-117 [121076] picpiclink
      14. 1wn3 picpic
        automatically matched to d1j1ya_
        complexed with act, cl, hxc
        1. region d:2-117 [121077] picpiclink
      15. 1wn3 picpic
        automatically matched to d1j1ya_
        complexed with act, cl, hxc
        1. region e:3-117 [121078] picpiclink
      16. 1wn3 picpic
        automatically matched to d1j1ya_
        complexed with act, cl, hxc
        1. region f:2-117 [121079] picpiclink
      17. 1wn3 picpic
        automatically matched to d1j1ya_
        complexed with act, cl, hxc
        1. region g:3-117 [121080] picpiclink
      18. 1wn3 picpic
        automatically matched to d1j1ya_
        complexed with act, cl, hxc
        1. region h:2-117 [121081] picpiclink
      19. 1wm6 picpic
        automatically matched to d1j1ya_
        complexed with cl
        1. region a:2-117 [121029] picpiclink
      20. 1wm6 picpic
        automatically matched to d1j1ya_
        complexed with cl
        1. region b:2-117 [121030] picpiclink
      21. 1wm6 picpic
        automatically matched to d1j1ya_
        complexed with cl
        1. region c:2-117 [121031] picpiclink
      22. 1wm6 picpic
        automatically matched to d1j1ya_
        complexed with cl
        1. region d:2-117 [121032] picpiclink
      23. 1wm6 picpic
        automatically matched to d1j1ya_
        complexed with cl
        1. region e:3-117 [121033] picpiclink
      24. 1wm6 picpic
        automatically matched to d1j1ya_
        complexed with cl
        1. region f:2-117 [121034] picpiclink
      25. 1wm6 picpic
        automatically matched to d1j1ya_
        complexed with cl
        1. region g:3-117 [121035] picpiclink
      26. 1wm6 picpic
        automatically matched to d1j1ya_
        complexed with cl
        1. region h:2-117 [121036] picpiclink
  2. Hypothetical protein HI1161 [89905]
    1. Haemophilus influenzae [TaxId: 727] [89906] (10)
      1. 1sc0 picpic
        structural genomics; NESG target IR63
        1. chain a [98796] picpiclink
        2. chain b [98797] picpiclink
      2. 1o0i picpic
        structural genomics; NESG target IR63
        complexed with mse
        1. chain a [86532] picpiclink
        2. chain b [86533] picpiclink
      3. 2b6e picpic
        automatically matched to d1o0ia_
        complexed with acy
        1. region a:2-137 [127986] picpiclink
      4. 2b6e picpic
        automatically matched to d1o0ia_
        complexed with acy
        1. region b:2-137 [127987] picpiclink
      5. 2b6e picpic
        automatically matched to d1o0ia_
        complexed with acy
        1. region c:2-137 [127988] picpiclink
      6. 2b6e picpic
        automatically matched to d1o0ia_
        complexed with acy
        1. region d:2-137 [127989] picpiclink
      7. 2b6e picpic
        automatically matched to d1o0ia_
        complexed with acy
        1. region e:2-137 [127990] picpiclink
      8. 2b6e picpic
        automatically matched to d1o0ia_
        complexed with acy
        1. region f:2-137 [127991] picpiclink
      9. 2b6e picpic
        automatically matched to d1o0ia_
        complexed with acy
        1. region g:2-137 [127992] picpiclink
      10. 2b6e picpic
        automatically matched to d1o0ia_
        complexed with acy
        1. region h:2-137 [127993] picpiclink
  3. Hypothetical protein YdiI [102910]
    1. Escherichia coli [TaxId: 562] [102911] (3)
      1. 1vh5 picpic
        structural genomics
        1. chain a [100642] picpiclink
        2. chain b [100643] picpiclink
      2. 1sbk picpic
        structural genomics; NESG target ER29
        complexed with so4
        1. chain a [98791] picpiclink
        2. chain b [98792] picpiclink
        3. chain c [98793] picpiclink
        4. chain d [98794] picpiclink
      3. 1vi8 picpic
        structural genomics
        1. chain a [100742] picpiclink
        2. chain b [100743] picpiclink
        3. chain c [100744] picpiclink
        4. chain d [100745] picpiclink
        5. chain e [100746] picpiclink
        6. chain f [100747] picpiclink
        7. chain g [100748] picpiclink
        8. chain h [100749] picpiclink
  4. Hypothetical protein YbdB [102912]
    1. Escherichia coli [TaxId: 562] [102913] (1)
      1. 1vh9 picpic
        structural genomics
        1. chain a [100653] picpiclink
        2. chain b [100654] picpiclink
  5. 4-hydroxybenzoyl CoA thioesterase [102914]
    1. Arthrobacter sp., strain su [TaxId: 1667] [102915] (3)
      1. 1q4u picpic
        complexed with 4ca, egl
        1. chain a [95828] picpiclink
        2. chain b [95829] picpiclink
      2. 1q4t picpic
        complexed with 4co, cl, egl
        1. chain a [95826] picpiclink
        2. chain b [95827] picpiclink
      3. 1q4s picpic
        complexed with coa, phb
        1. chain a [95824] picpiclink
        2. chain b [95825] picpiclink
  6. Hypothetical protein PH1136 [102916]
    1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [102917] (1)
      1. 1ixl picpic
        structural genomics
        1. chain a [90717] picpiclink
  7. Putative thioesterase SO4397 [110898]
    1. Shewanella oneidensis [TaxId: 70863] [110899] (1)
      SQ Q8E989
      1. 1t82 picpic
        Structural genomics target
        1. chain a [106639] picpiclink
        2. chain b [106640] picpiclink
        3. chain c [106641] picpiclink
        4. chain d [106642] picpiclink
  8. Hypothetical protein PA5026 [110900]
    1. Pseudomonas aeruginosa [TaxId: 287] [110901] (1)
      SQ Q9HUE3
      1. 1sh8 picpic
        Structural genomics target
        1. chain a [105549] picpiclink
        2. chain b [105550] picpiclink
  9. Hypothetical protein PA5202 [143175]
    1. Pseudomonas aeruginosa [TaxId: 287] [143176] (2)
      SQ Q9HTY7 4-129
      1. 1zki picpic
        complexed with acy
        1. region a:4-129 [125199] picpiclink
      2. 1zki picpic
        automatically matched to 1ZKI A:4-129
        complexed with acy
        1. region b:5-129 [125200] picpiclink
  10. Hypothetical protein CC3309 [143177]
    1. Caulobacter crescentus [TaxId: 155892] [143178] (1)
      SQ Q9A395 12-153
      1. 2hbo picpic
        complexed with edo, pe4
        1. region a:12-153 [136319] picpiclink
  11. Hypothetical protein Them2 [143179]
    1. Mouse (Mus musculus) [TaxId: 10090] [143180] (2)
      SQ Q9CQR4 13-139
      1. 2cy9 picpic
        1. region a:13-139 [131019] picpiclink
      2. 2cy9 picpic
        automatically matched to 2CY9 A:13-139
        1. region b:13-139 [131020] picpiclink
    2. Human (Homo sapiens) [TaxId: 9606] [143181] (12)
      SQ Q9NPJ3 19-139! SQ Q9NPJ3 3-138
      1. 2f0x picpic
        complexed with so4
        1. region a:3-138 [132673] picpiclink
      2. 2f0x picpic
        automatically matched to 2F0X A:3-138
        complexed with so4
        1. region b:3-138 [132674] picpiclink
      3. 2f0x picpic
        automatically matched to 2F0X A:3-138
        complexed with so4
        1. region c:3-138 [132675] picpiclink
      4. 2f0x picpic
        automatically matched to 2F0X A:3-138
        complexed with so4
        1. region d:4-138 [132676] picpiclink
      5. 2f0x picpic
        automatically matched to 2F0X A:3-138
        complexed with so4
        1. region e:4-138 [132677] picpiclink
      6. 2f0x picpic
        automatically matched to 2F0X A:3-138
        complexed with so4
        1. region f:3-138 [132678] picpiclink
      7. 2f0x picpic
        automatically matched to 2F0X A:3-138
        complexed with so4
        1. region g:3-138 [132679] picpiclink
      8. 2f0x picpic
        automatically matched to 2F0X A:3-138
        complexed with so4
        1. region h:4-138 [132680] picpiclink
      9. 2h4u picpic
        1. region a:19-139 [136082] picpiclink
      10. 2h4u picpic
        automatically matched to 2H4U A:19-139
        1. region b:19-139 [136083] picpiclink
      11. 2h4u picpic
        automatically matched to 2H4U A:19-139
        1. region c:19-139 [136084] picpiclink
      12. 2h4u picpic
        automatically matched to 2H4U A:19-139
        1. region d:19-139 [136085] picpiclink
  12. Hypothetical protein PA1835 [143182]
    1. Pseudomonas aeruginosa [TaxId: 287] [143183] (2)
      SQ Q9I2R0 1-145
      1. 1yoc picpic
        complexed with gol
        1. region a:1-145 [123778] picpiclink
      2. 1yoc picpic
        automatically matched to 1YOC A:1-145
        complexed with gol
        1. region b:1-145 [123779] picpiclink
  13. Transcription factor FapR, C-terminal domain [143184]
    1. Bacillus subtilis [TaxId: 1423] [143185] (6)
      SQ O34835 66-186! SQ O34835 73-183
      1. 2f41 picpic
        1. region a:73-183 [132904] picpiclink
      2. 2f41 picpic
        automatically matched to 2F41 A:73-183
        1. region b:73-183 [132905] picpiclink
      3. 2f41 picpic
        automatically matched to 2F41 A:73-183
        1. region c:73-183 [132906] picpiclink
      4. 2f41 picpic
        automatically matched to 2F41 A:73-183
        1. region d:73-183 [132907] picpiclink
      5. 2f3x picpic
        complexed with mlc
        1. region a:66-186 [132901] picpiclink
      6. 2f3x picpic
        automatically matched to 2F3X A:66-186
        complexed with mlc
        1. region b:66-186 [132902] picpiclink
  14. Hypothetical protein RHA1_ro05818 [160184]
    includes two extra N-terminal helices forming an interlocking four-helical bundle in the dimer
    1. Rhodococcus sp. RHA1 [TaxId: 101510] [160185] (3)
      SQ Q0S4E1 7-209
      1. 2ov9 picpic
        complexed with so4
        1. region a:7-209 [149034] picpiclink
      2. 2ov9 picpic
        automatically matched to 2OV9 A:7-209
        complexed with so4
        1. region b:7-209 [149035] picpiclink
      3. 2ov9 picpic
        automatically matched to 2OV9 A:7-209
        complexed with so4
        1. region c:7-209 [149036] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk