Structural Classification of Proteins
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Superfamily: Acyl-CoA dehydrogenase NM domain-like

flavoprotein: binds FAD; constituent families differ in the numbers of C-terminal domains (four-helical bundles)
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Multi-domain proteins (alpha and beta) [56572]
    Folds consisting of two or more domains belonging to different classes
  3. Fold: Acyl-CoA dehydrogenase NM domain-like [56644]
    2 domains: (1) all-alpha: 5 helices; (2) contains an open beta-sheet barrel: n*=5, S*=8; complex topology
  4. Superfamily: Acyl-CoA dehydrogenase NM domain-like [56645]
    flavoprotein: binds FAD; constituent families differ in the numbers of C-terminal domains (four-helical bundles)
    link to SUPERFAMILY database - Superfamily

Families:

  1. Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains [56646] (12)
    1. Butyryl-CoA dehydrogenase, NM domains [56647]
      1. Megasphaera elsdenii [TaxId: 907] [56648] (1)
        1. 1buc picpicxref
          complexed with caa, fad
          1. region a:1-232 [42851] picpiclink
          2. region b:1-232 [42852] picpiclink
      2. Rat (Rattus norvegicus) [TaxId: 10116] [69877] (1)
        1. 1jqi picpicxref
          complexed with caa, fad
          1. region a:4-234 [67088] picpiclink
          2. region b:404-634 [67090] picpiclink
    2. Medium chain acyl-CoA dehydrogenase, NM domains [56649]
      1. Pig (Sus scrofa) [TaxId: 9823] [56650] (3)
        1. 3mde picpicxref
          complexed with co8, fad
          1. region a:11-241 [42855] picpiclink
          2. region b:11-241 [42856] picpiclink
        2. 3mdd picpicxref
          complexed with fad
          1. region a:11-241 [42853] picpiclink
          2. region b:11-241 [42854] picpiclink
        3. 1udy picpicxref
          complexed with cs8, fad
          1. region a:11-241 [99232] picpiclink
          2. region b:11-241 [99234] picpiclink
          3. region c:11-241 [99236] picpiclink
          4. region d:11-241 [99238] picpiclink
      2. Human (Homo sapiens) [TaxId: 9606] [56651] (8)
        SQ P11310 34-421
        1. 1egd picpicxref
          complexed with fad; mutant
          1. region a:10-241 [42857] picpiclink
          2. region b:10-241 [42858] picpiclink
          3. region c:10-241 [42859] picpiclink
          4. region d:10-241 [42860] picpiclink
        2. 1egc picpicxref
          complexed with co8, fad; mutant
          1. region a:10-241 [42861] picpiclink
          2. region b:10-241 [42862] picpiclink
          3. region c:10-241 [42863] picpiclink
          4. region d:10-241 [42864] picpiclink
        3. 2a1t picpicxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1egca2
          complexed with amp, fad; mutant
          1. region a:10-241 [126006] picpiclink
        4. 2a1t picpicxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1egca2
          complexed with amp, fad; mutant
          1. region b:10-241 [126008] picpiclink
        5. 2a1t picpicxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1egca2
          complexed with amp, fad; mutant
          1. region c:10-241 [126010] picpiclink
        6. 2a1t picpicxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1egca2
          complexed with amp, fad; mutant
          1. region d:10-241 [126012] picpiclink
        7. 1ege picpicxref
          complexed with fad; mutant
          1. region a:10-241 [42865] picpiclink
          2. region b:10-241 [42866] picpiclink
          3. region c:10-241 [42867] picpiclink
          4. region d:10-241 [42868] picpiclink
        8. 1t9g picpicxrefxrefxref
          complexed with amp, fad
          1. region a:10-241 [106712] picpiclink
          2. region b:10-241 [106714] picpiclink
          3. region c:10-241 [106716] picpiclink
          4. region d:10-241 [106718] picpiclink
      3. Thermus thermophilus [TaxId: 274] [118186] (1)
        SQ Q5SJ70 32-409
        1. 1ukw picpicxref
          complexed with co, fad
          1. region a:32-258 [113264] picpiclink
          2. region b:32-258 [113266] picpiclink
    3. Isovaleryl-coa dehydrogenase, NM domains [56652]
      1. Human (Homo sapiens) [TaxId: 9606] [56653] (1)
        1. 1ivh picpicxref
          complexed with cos, fad
          1. region a:6-241 [42869] picpiclink
          2. region b:6-241 [42870] picpiclink
          3. region c:6-241 [42871] picpiclink
          4. region d:6-241 [42872] picpiclink
    4. Isobutyryl-CoA dehydrogenase [103394]
      1. Human (Homo sapiens) [TaxId: 9606] [103395] (1)
        1. 1rx0 picpicxref
          complexed with 2mc, acy, egl, fad
          1. region a:10-240 [98008] picpiclink
          2. region b:10-240 [98010] picpiclink
          3. region c:11-240 [98012] picpiclink
          4. region d:10-240 [98014] picpiclink
    5. Protein FkbI [103396]
      involved in biosynthesis of methoxymalonyl extender unit of fk520 polyketide immunosuppressant
      1. Streptomyces hygroscopicus [TaxId: 1912] [103397] (1)
        1. 1r2j picpicxref
          complexed with fad
          1. region a:3-212 [96870] picpiclink
    6. Glutaryl-CoA dehydrogenase GCDH [111293]
      1. Human (Homo sapiens) [TaxId: 9606] [111294] (4)
        SQ Q92947
        1. 1siq picpicxref
          complexed with fad
          1. region a:3-238 [105586] picpiclink
        2. 2r0n picpicxref
          automatically matched to d1siqa2
          complexed with fad, tgc; mutant
          1. region a:3-238 [151507] picpiclink
        3. 1sir picpicxref
          complexed with fad, nbc
          1. region a:3-238 [105588] picpiclink
        4. 2r0m picpicxref
          automatically matched to d1siqa2
          complexed with 4ni, fad; mutant
          1. region a:3-238 [151505] picpiclink
    7. 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains [118187]
      1. Clostridium aminobutyricum [TaxId: 33953] [118188] (1)
        SQ P55792
        1. 1u8v picpicxref
          complexed with fad, fs4
          1. region a:1-275 [113197] picpiclink
          2. region b:1-275 [113199] picpiclink
          3. region c:1-275 [113201] picpiclink
          4. region d:1-275 [113203] picpiclink
    8. Acyl-CoA dehydrogenase [144024]
      1. Thermus thermophilus [TaxId: 274] [144025] (8)
        SQ Q5SGZ2 2-234
        1. 2d29 picpicxrefxref
          automatically matched to 1WS9 A:2-234
          complexed with fad
          1. region a:2-234 [131158] picpiclink
        2. 2d29 picpicxrefxref
          automatically matched to 1WS9 A:2-234
          complexed with fad
          1. region b:2-234 [131160] picpiclink
        3. 2cx9 picpicxrefxrefxrefxref
          automatically matched to 1WS9 A:2-234
          complexed with cl
          1. region a:3-234 [130986] picpiclink
        4. 2cx9 picpicxrefxrefxrefxref
          automatically matched to 1WS9 A:2-234
          complexed with cl
          1. region b:3-234 [130988] picpiclink
        5. 2cx9 picpicxrefxrefxrefxref
          automatically matched to 1WS9 A:2-234
          complexed with cl
          1. region c:3-234 [130990] picpiclink
        6. 2cx9 picpicxrefxrefxrefxref
          automatically matched to 1WS9 A:2-234
          complexed with cl
          1. region d:3-234 [130992] picpiclink
        7. 1ws9 picpicxrefxref
          1. region a:2-234 [121224] picpiclink
        8. 1ws9 picpicxrefxref
          automatically matched to 1WS9 A:2-234
          1. region b:2-234 [121226] picpiclink
    9. Nitroalkane oxidase [144026]
      1. Fusarium oxysporum [TaxId: 5507] [144027] (18)
        SQ Q8X1D8 2-260
        1. 2c12 picpicxrefxrefxrefxrefxrefxref
          automatically matched to 2C0U A:2-260
          complexed with fad, gol, pe4, spm
          1. region a:2-260 [129617] picpiclink
        2. 2c12 picpicxrefxrefxrefxrefxrefxref
          automatically matched to 2C0U A:2-260
          complexed with fad, gol, pe4, spm
          1. region b:2-260 [129619] picpiclink
        3. 2c12 picpicxrefxrefxrefxrefxrefxref
          automatically matched to 2C0U A:2-260
          complexed with fad, gol, pe4, spm
          1. region c:2-260 [129621] picpiclink
        4. 2c12 picpicxrefxrefxrefxrefxrefxref
          automatically matched to 2C0U A:2-260
          complexed with fad, gol, pe4, spm
          1. region d:2-260 [129623] picpiclink
        5. 2c12 picpicxrefxrefxrefxrefxrefxref
          automatically matched to 2C0U A:2-260
          complexed with fad, gol, pe4, spm
          1. region e:2-260 [129625] picpiclink
        6. 2c12 picpicxrefxrefxrefxrefxrefxref
          automatically matched to 2C0U A:2-260
          complexed with fad, gol, pe4, spm
          1. region f:2-260 [129627] picpiclink
        7. 2c0u picpicxrefxrefxrefxref
          complexed with fad, nbt
          1. region a:2-260 [129608] picpiclink
        8. 2c0u picpicxrefxrefxrefxref
          automatically matched to 2C0U A:2-260
          complexed with fad, nbt
          1. region b:2-260 [129610] picpiclink
        9. 2c0u picpicxrefxrefxrefxref
          automatically matched to 2C0U A:2-260
          complexed with fad, nbt
          1. region c:2-260 [129612] picpiclink
        10. 2c0u picpicxrefxrefxrefxref
          automatically matched to 2C0U A:2-260
          complexed with fad, nbt
          1. region d:2-260 [129614] picpiclink
        11. 2reh picpicxrefxrefxrefxref
          automatically matched to d2c0ua2
          complexed with fad; mutant
          1. region a:2-260 [151974] picpiclink
        12. 2reh picpicxrefxrefxrefxref
          automatically matched to d2c0ua2
          complexed with fad; mutant
          1. region b:2-260 [151976] picpiclink
        13. 2reh picpicxrefxrefxrefxref
          automatically matched to d2c0ua2
          complexed with fad; mutant
          1. region c:2-260 [151978] picpiclink
        14. 2reh picpicxrefxrefxrefxref
          automatically matched to d2c0ua2
          complexed with fad; mutant
          1. region d:2-260 [151980] picpiclink
        15. 2zaf picpicxrefxrefxrefxref
          automatically matched to d2c0ua2
          complexed with fad; mutant
          1. region a:2-260 [154278] picpiclink
        16. 2zaf picpicxrefxrefxrefxref
          automatically matched to d2c0ua2
          complexed with fad; mutant
          1. region b:2-260 [154280] picpiclink
        17. 2zaf picpicxrefxrefxrefxref
          automatically matched to d2c0ua2
          complexed with fad; mutant
          1. region c:2-260 [154282] picpiclink
        18. 2zaf picpicxrefxrefxrefxref
          automatically matched to d2c0ua2
          complexed with fad; mutant
          1. region d:2-260 [154284] picpiclink
  2. acyl-CoA oxidase N-terminal domains [75600] (2)
    1. Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 [75601]
      1. Rat (Rattus norvegicus) [TaxId: 10116] [75602] (2)
        1. 2ddh picpicxrefxref
          automatically matched to d1is2a3
          complexed with fad, hxd
          1. region a:1-267 [131396] picpiclink
        2. 1is2 picpicxref
          complexed with fad
          1. region a:1-267 [71384] picpiclink
          2. region b:1-267 [71387] picpiclink
    2. Acyl-coenzyme A oxidase 1, domains 1 and 2 [118189]
      1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [118190] (1)
        SQ O65202
        1. 1w07 picpicxref
          complexed with ca, cl, fad, pt; mutant
          1. region a:2-272 [114048] picpiclink
          2. region b:2-272 [114051] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk