Structural Classification of Proteins
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Family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains

Lineage:

  1. Root: scop
  2. Class: Multi-domain proteins (alpha and beta) [56572]
    Folds consisting of two or more domains belonging to different classes
  3. Fold: Acyl-CoA dehydrogenase NM domain-like [56644]
    2 domains: (1) all-alpha: 5 helices; (2) contains an open beta-sheet barrel: n*=5, S*=8; complex topology
  4. Superfamily: Acyl-CoA dehydrogenase NM domain-like [56645]
    flavoprotein: binds FAD; constituent families differ in the numbers of C-terminal domains (four-helical bundles)
    link to SUPERFAMILY database - Superfamily
  5. Family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains [56646]

Protein Domains:

  1. Butyryl-CoA dehydrogenase, NM domains [56647]
    1. Megasphaera elsdenii [TaxId: 907] [56648] (1)
      1. 1buc picpicxref
        complexed with caa, fad
        1. region a:1-232 [42851] picpiclink
        2. region b:1-232 [42852] picpiclink
    2. Rat (Rattus norvegicus) [TaxId: 10116] [69877] (1)
      1. 1jqi picpicxref
        complexed with caa, fad
        1. region a:4-234 [67088] picpiclink
        2. region b:404-634 [67090] picpiclink
  2. Medium chain acyl-CoA dehydrogenase, NM domains [56649]
    1. Pig (Sus scrofa) [TaxId: 9823] [56650] (3)
      1. 3mde picpicxref
        complexed with co8, fad
        1. region a:11-241 [42855] picpiclink
        2. region b:11-241 [42856] picpiclink
      2. 3mdd picpicxref
        complexed with fad
        1. region a:11-241 [42853] picpiclink
        2. region b:11-241 [42854] picpiclink
      3. 1udy picpicxref
        complexed with cs8, fad
        1. region a:11-241 [99232] picpiclink
        2. region b:11-241 [99234] picpiclink
        3. region c:11-241 [99236] picpiclink
        4. region d:11-241 [99238] picpiclink
    2. Human (Homo sapiens) [TaxId: 9606] [56651] (8)
      SQ P11310 34-421
      1. 1egd picpicxref
        complexed with fad; mutant
        1. region a:10-241 [42857] picpiclink
        2. region b:10-241 [42858] picpiclink
        3. region c:10-241 [42859] picpiclink
        4. region d:10-241 [42860] picpiclink
      2. 1egc picpicxref
        complexed with co8, fad; mutant
        1. region a:10-241 [42861] picpiclink
        2. region b:10-241 [42862] picpiclink
        3. region c:10-241 [42863] picpiclink
        4. region d:10-241 [42864] picpiclink
      3. 2a1t picpicxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1egca2
        complexed with amp, fad; mutant
        1. region a:10-241 [126006] picpiclink
      4. 2a1t picpicxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1egca2
        complexed with amp, fad; mutant
        1. region b:10-241 [126008] picpiclink
      5. 2a1t picpicxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1egca2
        complexed with amp, fad; mutant
        1. region c:10-241 [126010] picpiclink
      6. 2a1t picpicxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1egca2
        complexed with amp, fad; mutant
        1. region d:10-241 [126012] picpiclink
      7. 1ege picpicxref
        complexed with fad; mutant
        1. region a:10-241 [42865] picpiclink
        2. region b:10-241 [42866] picpiclink
        3. region c:10-241 [42867] picpiclink
        4. region d:10-241 [42868] picpiclink
      8. 1t9g picpicxrefxrefxref
        complexed with amp, fad
        1. region a:10-241 [106712] picpiclink
        2. region b:10-241 [106714] picpiclink
        3. region c:10-241 [106716] picpiclink
        4. region d:10-241 [106718] picpiclink
    3. Thermus thermophilus [TaxId: 274] [118186] (1)
      SQ Q5SJ70 32-409
      1. 1ukw picpicxref
        complexed with co, fad
        1. region a:32-258 [113264] picpiclink
        2. region b:32-258 [113266] picpiclink
  3. Isovaleryl-coa dehydrogenase, NM domains [56652]
    1. Human (Homo sapiens) [TaxId: 9606] [56653] (1)
      1. 1ivh picpicxref
        complexed with cos, fad
        1. region a:6-241 [42869] picpiclink
        2. region b:6-241 [42870] picpiclink
        3. region c:6-241 [42871] picpiclink
        4. region d:6-241 [42872] picpiclink
  4. Isobutyryl-CoA dehydrogenase [103394]
    1. Human (Homo sapiens) [TaxId: 9606] [103395] (1)
      1. 1rx0 picpicxref
        complexed with 2mc, acy, egl, fad
        1. region a:10-240 [98008] picpiclink
        2. region b:10-240 [98010] picpiclink
        3. region c:11-240 [98012] picpiclink
        4. region d:10-240 [98014] picpiclink
  5. Protein FkbI [103396]
    involved in biosynthesis of methoxymalonyl extender unit of fk520 polyketide immunosuppressant
    1. Streptomyces hygroscopicus [TaxId: 1912] [103397] (1)
      1. 1r2j picpicxref
        complexed with fad
        1. region a:3-212 [96870] picpiclink
  6. Glutaryl-CoA dehydrogenase GCDH [111293]
    1. Human (Homo sapiens) [TaxId: 9606] [111294] (4)
      SQ Q92947
      1. 1siq picpicxref
        complexed with fad
        1. region a:3-238 [105586] picpiclink
      2. 2r0n picpicxref
        automatically matched to d1siqa2
        complexed with fad, tgc; mutant
        1. region a:3-238 [151507] picpiclink
      3. 1sir picpicxref
        complexed with fad, nbc
        1. region a:3-238 [105588] picpiclink
      4. 2r0m picpicxref
        automatically matched to d1siqa2
        complexed with 4ni, fad; mutant
        1. region a:3-238 [151505] picpiclink
  7. 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains [118187]
    1. Clostridium aminobutyricum [TaxId: 33953] [118188] (1)
      SQ P55792
      1. 1u8v picpicxref
        complexed with fad, fs4
        1. region a:1-275 [113197] picpiclink
        2. region b:1-275 [113199] picpiclink
        3. region c:1-275 [113201] picpiclink
        4. region d:1-275 [113203] picpiclink
  8. Acyl-CoA dehydrogenase [144024]
    1. Thermus thermophilus [TaxId: 274] [144025] (8)
      SQ Q5SGZ2 2-234
      1. 2d29 picpicxrefxref
        automatically matched to 1WS9 A:2-234
        complexed with fad
        1. region a:2-234 [131158] picpiclink
      2. 2d29 picpicxrefxref
        automatically matched to 1WS9 A:2-234
        complexed with fad
        1. region b:2-234 [131160] picpiclink
      3. 2cx9 picpicxrefxrefxrefxref
        automatically matched to 1WS9 A:2-234
        complexed with cl
        1. region a:3-234 [130986] picpiclink
      4. 2cx9 picpicxrefxrefxrefxref
        automatically matched to 1WS9 A:2-234
        complexed with cl
        1. region b:3-234 [130988] picpiclink
      5. 2cx9 picpicxrefxrefxrefxref
        automatically matched to 1WS9 A:2-234
        complexed with cl
        1. region c:3-234 [130990] picpiclink
      6. 2cx9 picpicxrefxrefxrefxref
        automatically matched to 1WS9 A:2-234
        complexed with cl
        1. region d:3-234 [130992] picpiclink
      7. 1ws9 picpicxrefxref
        1. region a:2-234 [121224] picpiclink
      8. 1ws9 picpicxrefxref
        automatically matched to 1WS9 A:2-234
        1. region b:2-234 [121226] picpiclink
  9. Nitroalkane oxidase [144026]
    1. Fusarium oxysporum [TaxId: 5507] [144027] (18)
      SQ Q8X1D8 2-260
      1. 2c12 picpicxrefxrefxrefxrefxrefxref
        automatically matched to 2C0U A:2-260
        complexed with fad, gol, pe4, spm
        1. region a:2-260 [129617] picpiclink
      2. 2c12 picpicxrefxrefxrefxrefxrefxref
        automatically matched to 2C0U A:2-260
        complexed with fad, gol, pe4, spm
        1. region b:2-260 [129619] picpiclink
      3. 2c12 picpicxrefxrefxrefxrefxrefxref
        automatically matched to 2C0U A:2-260
        complexed with fad, gol, pe4, spm
        1. region c:2-260 [129621] picpiclink
      4. 2c12 picpicxrefxrefxrefxrefxrefxref
        automatically matched to 2C0U A:2-260
        complexed with fad, gol, pe4, spm
        1. region d:2-260 [129623] picpiclink
      5. 2c12 picpicxrefxrefxrefxrefxrefxref
        automatically matched to 2C0U A:2-260
        complexed with fad, gol, pe4, spm
        1. region e:2-260 [129625] picpiclink
      6. 2c12 picpicxrefxrefxrefxrefxrefxref
        automatically matched to 2C0U A:2-260
        complexed with fad, gol, pe4, spm
        1. region f:2-260 [129627] picpiclink
      7. 2c0u picpicxrefxrefxrefxref
        complexed with fad, nbt
        1. region a:2-260 [129608] picpiclink
      8. 2c0u picpicxrefxrefxrefxref
        automatically matched to 2C0U A:2-260
        complexed with fad, nbt
        1. region b:2-260 [129610] picpiclink
      9. 2c0u picpicxrefxrefxrefxref
        automatically matched to 2C0U A:2-260
        complexed with fad, nbt
        1. region c:2-260 [129612] picpiclink
      10. 2c0u picpicxrefxrefxrefxref
        automatically matched to 2C0U A:2-260
        complexed with fad, nbt
        1. region d:2-260 [129614] picpiclink
      11. 2reh picpicxrefxrefxrefxref
        automatically matched to d2c0ua2
        complexed with fad; mutant
        1. region a:2-260 [151974] picpiclink
      12. 2reh picpicxrefxrefxrefxref
        automatically matched to d2c0ua2
        complexed with fad; mutant
        1. region b:2-260 [151976] picpiclink
      13. 2reh picpicxrefxrefxrefxref
        automatically matched to d2c0ua2
        complexed with fad; mutant
        1. region c:2-260 [151978] picpiclink
      14. 2reh picpicxrefxrefxrefxref
        automatically matched to d2c0ua2
        complexed with fad; mutant
        1. region d:2-260 [151980] picpiclink
      15. 2zaf picpicxrefxrefxrefxref
        automatically matched to d2c0ua2
        complexed with fad; mutant
        1. region a:2-260 [154278] picpiclink
      16. 2zaf picpicxrefxrefxrefxref
        automatically matched to d2c0ua2
        complexed with fad; mutant
        1. region b:2-260 [154280] picpiclink
      17. 2zaf picpicxrefxrefxrefxref
        automatically matched to d2c0ua2
        complexed with fad; mutant
        1. region c:2-260 [154282] picpiclink
      18. 2zaf picpicxrefxrefxrefxref
        automatically matched to d2c0ua2
        complexed with fad; mutant
        1. region d:2-260 [154284] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk