Structural Classification of Proteins
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Fold: HydB/Nqo4-like

3 domains: (1) all-alpha; (2&3) alpha+beta

Lineage:

  1. Root: scop
  2. Class: Multi-domain proteins (alpha and beta) [56572]
    Folds consisting of two or more domains belonging to different classes
  3. Fold: HydB/Nqo4-like [56761]
    3 domains: (1) all-alpha; (2&3) alpha+beta

Superfamilies:

  1. HydB/Nqo4-like [56762] (2)
    link to SUPERFAMILY database - Superfamily
    1. Nickel-iron hydrogenase, large subunit [56763] (5)
      1. Nickel-iron hydrogenase, large subunit [56764]
        1. Desulfovibrio gigas [TaxId: 879] [56765] (4)
          1. 1yq9 picpicxrefxref
            complexed with f3s, fco, gol, h2s, mg, ni, per, sf4
            1. region h:7-536 [144716] picpiclink
          2. 1yq9 picpicxrefxref
            automatically matched to 1YQ9 H:7-536
            complexed with f3s, fco, gol, h2s, mg, ni, per, sf4
            1. region i:7-536 [144717] picpiclink
          3. 2frv picpicxref
            complexed with fco, fs3, fs4, mo3, ni, o
            1. chain l [43290] picpiclink
            2. chain b [43291] picpiclink
            3. chain d [43292] picpiclink
            4. chain f [43293] picpiclink
            5. chain h [43294] picpiclink
            6. chain j [43295] picpiclink
          4. 1frv picpicxref
            complexed with fel, fs3, fs4, ni
            1. chain b [43296] picpiclink
            2. chain d [43297] picpiclink
        2. Desulfovibrio vulgaris [TaxId: 881] [56766] (16)
          1. 1wui picpicxref
            automatically matched to d1ubhl_
            complexed with f3s, mg, mpd, mrd, nfc, sf4
            1. region l:19-552 [121289] picpiclink
          2. 1wuk picpicxref
            automatically matched to d1ubhl_
            complexed with f3s, mg, mrd, nfo, sf4
            1. region l:19-552 [121293] picpiclink
          3. 1ubk picpicxref
            complexed with cmo, fne, fs3, fs4, mg, mpd
            1. chain l [88422] picpiclink
          4. 1ubl picpicxref
            complexed with cmo, fne, fs3, fs4, mg, mpd
            1. chain l [88424] picpiclink
          5. 1wuh picpicxref
            automatically matched to d1ubhl_
            complexed with f3s, mg, mpd, nfc, sf4
            1. region l:19-552 [121287] picpiclink
          6. 1ubh picpicxref
            complexed with cmo, fne, fs3, fs4, mg, mpd
            1. chain l [88418] picpiclink
          7. 1wuj picpicxref
            automatically matched to d1ubhl_
            complexed with f3s, mg, nfo, sf4
            1. region l:19-552 [121291] picpiclink
          8. 1ubr picpicxref
            complexed with cmo, fne, fs3, fs4, mg
            1. chain l [88430] picpiclink
          9. 1ubo picpicxref
            complexed with cmo, fne, fs3, fs4, mg
            1. chain l [88428] picpiclink
          10. 1ubt picpicxref
            complexed with fne, fs3, fs4, mg
            1. chain l [88432] picpiclink
          11. 1ubj picpicxref
            complexed with cmo, fne, fs3, fs4, mg
            1. chain l [88420] picpiclink
          12. 1ubm picpicxref
            complexed with fne, fs3, fs4, mg, mpd
            1. chain l [88426] picpiclink
          13. 1ubu picpicxref
            complexed with fne, fs3, fs4, mg
            1. chain l [88434] picpiclink
          14. 1wul picpicxref
            automatically matched to d1ubhl_
            complexed with f3s, mg, mpd, mrd, nfr, sf4
            1. region l:19-552 [121295] picpiclink
          15. 1h2r picpicxref
            1. chain l [43298] picpiclink
          16. 1h2a picpicxref
            complexed with fs3, fs4, mg, nfe
            1. chain l [43299] picpiclink
        3. Desulfovibrio fructosovorans [TaxId: 878] [56767] (1)
          1. 1frf picpicxref
            complexed with fe, fs3, fs4, mg, ni
            1. chain l [43300] picpiclink
        4. Desulfomicrobium baculatum [TaxId: 899] [56768] (1)
          1. 1cc1 picpicxref
            complexed with cse, fco, fe2, fs4, h2s, ni
            1. chain l [43301] picpiclink
        5. Desulfovibrio desulfuricans [TaxId: 876] [64509] (1)
          1. 1e3d picpicxref
            complexed with fne, fs3, fs4, fsx, h2s, mg
            1. chain b [59189] picpiclink
            2. chain d [59191] picpiclink
    2. Nqo4-like [144028] (1)
      Pfam 00346; Respiratory-chain NADH dehydrogenase, 49 Kd subunit
      1. NADH-quinone oxidoreductase chain 4, Nqo4 [144029]
        1. Thermus thermophilus [TaxId: 274] [144030] (4)
          SQ Q56220 35-409
          1. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with fes, fmn, sf4
            1. region 4:35-409 [134129] picpiclink
          2. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2FUG 4:35-409
            complexed with fes, fmn, sf4
            1. region d:35-409 [134142] picpiclink
          3. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2FUG 4:35-409
            complexed with fes, fmn, sf4
            1. region m:35-409 [134155] picpiclink
          4. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2FUG 4:35-409
            complexed with fes, fmn, sf4
            1. region v:35-409 [134168] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk