Structural Classification of Proteins
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Superfamily: HydB/Nqo4-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Multi-domain proteins (alpha and beta) [56572]
    Folds consisting of two or more domains belonging to different classes
  3. Fold: HydB/Nqo4-like [56761]
    3 domains: (1) all-alpha; (2&3) alpha+beta
  4. Superfamily: HydB/Nqo4-like [56762]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Nickel-iron hydrogenase, large subunit [56763] (5)
    1. Nickel-iron hydrogenase, large subunit [56764]
      1. Desulfovibrio gigas [TaxId: 879] [56765] (4)
        1. 1yq9 picpicxrefxref
          complexed with f3s, fco, gol, h2s, mg, ni, per, sf4
          1. region h:7-536 [144716] picpiclink
        2. 1yq9 picpicxrefxref
          automatically matched to 1YQ9 H:7-536
          complexed with f3s, fco, gol, h2s, mg, ni, per, sf4
          1. region i:7-536 [144717] picpiclink
        3. 2frv picpicxref
          complexed with fco, fs3, fs4, mo3, ni, o
          1. chain l [43290] picpiclink
          2. chain b [43291] picpiclink
          3. chain d [43292] picpiclink
          4. chain f [43293] picpiclink
          5. chain h [43294] picpiclink
          6. chain j [43295] picpiclink
        4. 1frv picpicxref
          complexed with fel, fs3, fs4, ni
          1. chain b [43296] picpiclink
          2. chain d [43297] picpiclink
      2. Desulfovibrio vulgaris [TaxId: 881] [56766] (16)
        1. 1wui picpicxref
          automatically matched to d1ubhl_
          complexed with f3s, mg, mpd, mrd, nfc, sf4
          1. region l:19-552 [121289] picpiclink
        2. 1wuk picpicxref
          automatically matched to d1ubhl_
          complexed with f3s, mg, mrd, nfo, sf4
          1. region l:19-552 [121293] picpiclink
        3. 1ubk picpicxref
          complexed with cmo, fne, fs3, fs4, mg, mpd
          1. chain l [88422] picpiclink
        4. 1ubl picpicxref
          complexed with cmo, fne, fs3, fs4, mg, mpd
          1. chain l [88424] picpiclink
        5. 1wuh picpicxref
          automatically matched to d1ubhl_
          complexed with f3s, mg, mpd, nfc, sf4
          1. region l:19-552 [121287] picpiclink
        6. 1ubh picpicxref
          complexed with cmo, fne, fs3, fs4, mg, mpd
          1. chain l [88418] picpiclink
        7. 1wuj picpicxref
          automatically matched to d1ubhl_
          complexed with f3s, mg, nfo, sf4
          1. region l:19-552 [121291] picpiclink
        8. 1ubr picpicxref
          complexed with cmo, fne, fs3, fs4, mg
          1. chain l [88430] picpiclink
        9. 1ubo picpicxref
          complexed with cmo, fne, fs3, fs4, mg
          1. chain l [88428] picpiclink
        10. 1ubt picpicxref
          complexed with fne, fs3, fs4, mg
          1. chain l [88432] picpiclink
        11. 1ubj picpicxref
          complexed with cmo, fne, fs3, fs4, mg
          1. chain l [88420] picpiclink
        12. 1ubm picpicxref
          complexed with fne, fs3, fs4, mg, mpd
          1. chain l [88426] picpiclink
        13. 1ubu picpicxref
          complexed with fne, fs3, fs4, mg
          1. chain l [88434] picpiclink
        14. 1wul picpicxref
          automatically matched to d1ubhl_
          complexed with f3s, mg, mpd, mrd, nfr, sf4
          1. region l:19-552 [121295] picpiclink
        15. 1h2r picpicxref
          1. chain l [43298] picpiclink
        16. 1h2a picpicxref
          complexed with fs3, fs4, mg, nfe
          1. chain l [43299] picpiclink
      3. Desulfovibrio fructosovorans [TaxId: 878] [56767] (1)
        1. 1frf picpicxref
          complexed with fe, fs3, fs4, mg, ni
          1. chain l [43300] picpiclink
      4. Desulfomicrobium baculatum [TaxId: 899] [56768] (1)
        1. 1cc1 picpicxref
          complexed with cse, fco, fe2, fs4, h2s, ni
          1. chain l [43301] picpiclink
      5. Desulfovibrio desulfuricans [TaxId: 876] [64509] (1)
        1. 1e3d picpicxref
          complexed with fne, fs3, fs4, fsx, h2s, mg
          1. chain b [59189] picpiclink
          2. chain d [59191] picpiclink
  2. Nqo4-like [144028] (1)
    Pfam 00346; Respiratory-chain NADH dehydrogenase, 49 Kd subunit
    1. NADH-quinone oxidoreductase chain 4, Nqo4 [144029]
      1. Thermus thermophilus [TaxId: 274] [144030] (4)
        SQ Q56220 35-409
        1. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with fes, fmn, sf4
          1. region 4:35-409 [134129] picpiclink
        2. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2FUG 4:35-409
          complexed with fes, fmn, sf4
          1. region d:35-409 [134142] picpiclink
        3. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2FUG 4:35-409
          complexed with fes, fmn, sf4
          1. region m:35-409 [134155] picpiclink
        4. 2fug picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2FUG 4:35-409
          complexed with fes, fmn, sf4
          1. region v:35-409 [134168] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk