Structural Classification of Proteins
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Fold: Viral glycoprotein ectodomain-like

complex fold; contains three rigid, mostly-beta domains and an alpha-helical region, acting as a conformatiomal switch ("fusion stalk")

Lineage:

  1. Root: scop
  2. Class: Multi-domain proteins (alpha and beta) [56572]
    Folds consisting of two or more domains belonging to different classes
  3. Fold: Viral glycoprotein ectodomain-like [161007]
    complex fold; contains three rigid, mostly-beta domains and an alpha-helical region, acting as a conformatiomal switch ("fusion stalk")

Superfamilies:

  1. Viral glycoprotein ectodomain-like [161008] (2)
    1. Glycoprotein B-like [161009] (1)
      Pfam 00606; Herpesvirus Glycoprotein B
      1. Glycoprotein B [161010]
        1. Human herpesvirus 1 [TaxId: 10298] [161011] (3)
          SQ P06437 111-725
          1. 2gum picpic
            complexed with na
            1. region a:111-725 [147184] picpiclink
          2. 2gum picpic
            automatically matched to 2GUM A:111-725
            complexed with na
            1. region b:111-724 [147185] picpiclink
          3. 2gum picpic
            automatically matched to 2GUM A:111-725
            complexed with na
            1. region c:111-723 [147186] picpiclink
    2. Spike glycoprotein-like [161012] (1)
      Pfam 00974; Rhabdovirus spike glycoprotein
      1. Spike glycoprotein [161013]
        1. Vesicular stomatitis indiana virus [TaxId: 11277] [161014] (4)
          SQ P04883 17-425
          representative prefusion form 2CMZ; representative acidic conformation 2J6J
          1. 2cmz picpic
            complexed with ca, pe4
            1. region a:1-409 [146415] picpiclink
          2. 2cmz picpic
            automatically matched to 2CMZ A:1-409
            complexed with ca, pe4
            1. region b:1-409 [146416] picpiclink
          3. 2cmz picpic
            automatically matched to 2CMZ A:1-409
            complexed with ca, pe4
            1. region c:1-408 [146417] picpiclink
          4. 2j6j picpic
            automatically matched to 2CMZ A:1-409
            complexed with nag, yb
            1. region a:1-409 [147895] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk