Superfamily: Viral glycoprotein ectodomain-like

Lineage:

1. Root: scop
2. Class: Multi-domain proteins (alpha and beta) [56572]
   Folds consisting of two or more domains belonging to different classes
3. Fold: Viral glycoprotein ectodomain-like [161007]
   complex fold; contains three rigid, mostly-beta domains and an alpha-helical region, acting as a conformatiomal switch ("fusion stalk")
4. Superfamily: Viral glycoprotein ectodomain-like [161008]

Families:

1. Glycoprotein B-like [161009] (1)
   Pfam 00606; Herpesvirus Glycoprotein B
   1. Glycoprotein B [161010]
      1. Human herpesvirus 1 [TaxId: 10298] [161011] (3)
         SQ P06437 111-725
         1. 2gum
            complexed with na
            1. region a:111-725 [147184]
         2. 2gum
            automatically matched to 2GUM A:111-725
            complexed with na
            1. region b:111-724 [147185]
         3. 2gum
            automatically matched to 2GUM A:111-725
            complexed with na
            1. region c:111-723 [147186]
2. Spike glycoprotein-like [161012] (1)
   Pfam 00974; Rhabdovirus spike glycoprotein
   1. Spike glycoprotein [161013]
      1. Vesicular stomatitis indiana virus [TaxId: 11277] [161014] (4)
         SQ P04883 17-425
         representative prefusion form 2CMZ; representative acidic conformation 2J6J
         1. 2cmz
            complexed with ca, pe4
            1. region a:1-409 [146415]
         2. 2cmz
            automatically matched to 2CMZ A:1-409
            complexed with ca, pe4
            1. region b:1-409 [146416]
         3. 2cmz
            automatically matched to 2CMZ A:1-409
            complexed with ca, pe4
            1. region c:1-408 [146417]
         4. 2j6j
            automatically matched to 2CMZ A:1-409
            complexed with nag, yb
            1. region a:1-409 [147895]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk