Structural Classification of Proteins
home mail help root up expand collapse

Superfamily: Cytochrome c oxidase subunit II-like, transmembrane region

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Membrane and cell surface proteins and peptides [56835]
    Does not include proteins in the immune system
  3. Fold: Transmembrane helix hairpin [81334]
    two antiparallel transmembrane helices
  4. Superfamily: Cytochrome c oxidase subunit II-like, transmembrane region [81464]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Cytochrome c oxidase subunit II-like, transmembrane region [81463] (5)
    1. Mitochondrial cytochrome c oxidase, subunit II [81455]
      1. Cow (Bos taurus) [TaxId: 9913] [81454] (21)
        1. 1v54 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, unx, zn
          1. region b:1-90 [100323] picpiclink
          2. region o:1-90 [100337] picpiclink
        2. 2dyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1occb2
          complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, unx, zn
          1. region b:1-90 [131901] picpiclink
        3. 2dyr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1occb2
          complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, unx, zn
          1. region o:1-90 [131915] picpiclink
        4. 1v55 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, unx, zn
          1. region b:1-90 [100351] picpiclink
          2. region o:1-90 [100365] picpiclink
        5. 2eij picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1occb2
          complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
          1. region b:1-90 [132141] picpiclink
        6. 2eij picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1occb2
          complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
          1. region o:1-90 [132155] picpiclink
        7. 2eil picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1occb2
          complexed with cd, cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
          1. region b:1-90 [132197] picpiclink
        8. 2eil picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1occb2
          complexed with cd, cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
          1. region o:1-90 [132211] picpiclink
        9. 2eik picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1occb2
          complexed with cd, cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
          1. region b:1-90 [132169] picpiclink
        10. 2eik picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1occb2
          complexed with cd, cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
          1. region o:1-90 [132183] picpiclink
        11. 2dys picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1occb2
          complexed with cdl, chd, cu, cua, dmu, glh, hea, mg, na, pek, pgv, psc, tgl, unx, zn
          1. region b:1-90 [131929] picpiclink
        12. 2dys picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1occb2
          complexed with cdl, chd, cu, cua, dmu, glh, hea, mg, na, pek, pgv, psc, tgl, unx, zn
          1. region o:1-90 [131943] picpiclink
        13. 2occ picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with cu, hea, mg, na, per, zn
          1. region b:1-90 [43519] picpiclink
          2. region o:1-90 [43529] picpiclink
        14. 1ocr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with cu, hea, mg, na, zn
          1. region b:1-90 [43539] picpiclink
          2. region o:1-90 [43549] picpiclink
        15. 2eim picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1occb2
          complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
          1. region b:1-90 [132225] picpiclink
        16. 2eim picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1occb2
          complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
          1. region o:1-90 [132239] picpiclink
        17. 2ein picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1occb2
          complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
          1. region b:1-90 [132253] picpiclink
        18. 2ein picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1occb2
          complexed with cdl, chd, cu, cua, dmu, hea, mg, na, pek, pgv, psc, tgl, zn
          1. region o:1-90 [132267] picpiclink
        19. 1occ picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with cu, hea, mg, zn
          1. region b:1-90 [43559] picpiclink
          2. region o:1-90 [43569] picpiclink
        20. 1ocz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with azi, cu, hea, mg, na, zn
          1. region b:1-90 [43579] picpiclink
          2. region o:1-90 [43589] picpiclink
        21. 1oco picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with cmo, cu, hea, mg, na, zn
          1. region b:1-90 [43599] picpiclink
          2. region o:1-90 [43609] picpiclink
    2. Bacterial aa3 type cytochrome c oxidase subunit II [81458]
      1. Paracoccus denitrificans [TaxId: 266] [81456] (3)
        1. 3ehb picpicxrefxrefxref
          automatically matched to d1ar1b2
          complexed with ca, cu, hea, lda, lmt, mg, per; mutant
          1. region b:1-107 [158151] picpiclink
        2. 1ar1 picpicxrefxrefxrefxref
          complexed with ca, cu, hea, lda, mg
          1. region b:1-107 [43619] picpiclink
        3. 1qle picpicxrefxrefxrefxrefxrefxref
          1. region b:1-107 [43621] picpiclink
      2. Rhodobacter sphaeroides [TaxId: 1063] [81457] (6)
        1. 3dtu picpicxrefxrefxrefxref
          automatically matched to d1m56b2
          complexed with ca, cd, cu, dmu, dxc, hea, hto, mg, oh, po4, trd
          1. region b:30-129 [157858] picpiclink
        2. 3dtu picpicxrefxrefxrefxref
          automatically matched to d1m56b2
          complexed with ca, cd, cu, dmu, dxc, hea, hto, mg, oh, po4, trd
          1. region d:30-129 [157861] picpiclink
        3. 2gsm picpicxrefxrefxrefxref
          automatically matched to d1m56b2
          complexed with ca, cd, cu, dmu, hea, mg, oh, trd
          1. region b:30-129 [135591] picpiclink
        4. 2gsm picpicxrefxrefxrefxref
          automatically matched to d1m56b2
          complexed with ca, cd, cu, dmu, hea, mg, oh, trd
          1. region d:30-129 [135594] picpiclink
        5. 1m56 picpicxrefxrefxrefxref
          complexed with ca, cu, hea, mg, peh
          1. region b:30-129 [74473] picpiclink
          2. region h:30-129 [74478] picpiclink
        6. 1m57 picpicxrefxrefxrefxref
          complexed with ca, cu, hea, mg, peh; mutant
          1. region b:30-129 [74483] picpiclink
          2. region h:30-129 [74488] picpiclink
    3. Bacterial ba3 type cytochrome c oxidase subunit II [81460]
      1. Thermus thermophilus [TaxId: 274] [81459] (5)
        the "missing" first helix is complemented by the ba3 subunit IIa
        1. 1xme picpicxrefxrefxref
          automatically matched to d1ehkb2
          complexed with bng, cu, cua, gol, has, hem
          1. region b:3-36 [122145] picpiclink
        2. 1ehk picpicxrefxrefxref
          complexed with 1cu, bng, cua, has, hem
          1. region b:3-40 [43625] picpiclink
        3. 2qpe picpicxrefxref
          automatically matched to d1ehkb2
          complexed with cu1, cua, has, hem; mutant
          1. region b:3-36 [151203] picpiclink
        4. 3bvd picpicxrefxref
          automatically matched to d1ehkb2
          complexed with cu, cua, has, hem, xe; mutant
          1. region b:3-36 [155661] picpiclink
        5. 2qpd picpicxrefxref
          automatically matched to d1ehkb2
          complexed with cu1, cua, has, hem; mutant
          1. region b:3-36 [151200] picpiclink
    4. Cytochrome O ubiquinol oxidase, subunit II [81462]
      1. Escherichia coli [TaxId: 562] [81461] (1)
        1. 1fft picpicxrefxrefxref
          complexed with cu, hem, heo
          1. region b:27-117 [43628] picpiclink
          2. region g:27-117 [43631] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk