Structural Classification of Proteins
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Fold: Cystine-knot cytokines

disulfide-rich fold; common core is all-beta

Lineage:

  1. Root: scop
  2. Class: Small proteins [56992]
    Usually dominated by metal ligand, heme, and/or disulfide bridges
  3. Fold: Cystine-knot cytokines [57500]
    disulfide-rich fold; common core is all-beta

Superfamilies:

  1. Cystine-knot cytokines [57501] (7)
    link to SUPERFAMILY database - Superfamily
    1. Platelet-derived growth factor-like [57502] (5)
      1. Platelet-derived growth factor BB [57503]
        1. Human (Homo sapiens) [TaxId: 9606] [57504] (1) picpic
      2. Vascular endothelial growth factor, VEGF [57505]
        1. Human (Homo sapiens) [TaxId: 9606] [57506] (25) picpic
          SQ P15692 40-133
        2. Aspic viper (Vipera aspis aspis) [TaxId: 8706] [118255] (1) picpic
          SQ P67863 1-100 # svVEGF (toxin); vammin
        3. Russell's viper (Daboia russelli russelli) [TaxId: 8707] [118256] (1) picpic
          SQ P67861 2-95 # svVEGF (toxin); VR-1
      3. Placenta growth factor-1, PLGF-1 [64560]
        1. Human (Homo sapiens) [TaxId: 9606] [64561] (2) picpic
    2. Transforming growth factor (TGF)-beta [57507] (7)
      1. TGF-beta3 [57508]
        1. Human (Homo sapiens) [TaxId: 9606] [57509] (4) picpic
      2. TGF-beta2 [57510]
        1. Human (Homo sapiens) [TaxId: 9606] [57511] (2) picpic
      3. TGF-beta1 [57512]
        1. Human (Homo sapiens) [TaxId: 9606] [57513] (3) picpic
      4. Bone morphogenetic protein-7 (BMP-7) [57514]
        1. Human (Homo sapiens) [TaxId: 9606] [57515] (4) picpic
      5. Bone morphogenetic protein-2 (BMP-2) [57516]
        1. Human (Homo sapiens) [TaxId: 9606] [57517] (15) picpic
      6. Activin A (Inhibin beta A) [90170]
        1. Human (Homo sapiens) [TaxId: 9606] [90171] (14) picpic
          SQ P08476 311-426
      7. Glial cell-derived neurotrophic factor, GDNF [57518]
        1. Rat (Rattus norvegicus) [TaxId: 10116] [57519] (1) picpic
    3. Noggin [82904] (1)
      1. Noggin [82905]
        BMP-7 antagonist
        1. Human (Homo sapiens) [TaxId: 9606] [82906] (1) picpic
    4. Neurotrophin [57520] (5)
      1. Brain-derived neurotrophic factor, BDNF [88882]
        1. Human (Homo sapiens) [TaxId: 9606] [88883] (2) picpic
      2. Neurotrophin 3, NT3 [88884]
        1. Human (Homo sapiens) [TaxId: 9606] [88885] (5) picpic
      3. Neurotrophin 4, NT4 [57523]
        1. Human (Homo sapiens) [TaxId: 9606] [57524] (3) picpic
      4. beta-Nerve growth factor [57525]
        1. Mouse (Mus musculus) [TaxId: 10090] [57526] (3) picpic
        2. Human (Homo sapiens) [TaxId: 9606] [57527] (4) picpic
          SQ P01138
    5. Gonadodropin/Follitropin [57528] (3)
      1. Glycoprotein hormones alpha chain (Gonadotropin A, Follitropin alpha) [63395]
        1. Human (Homo sapiens) [TaxId: 9606] [63397] (9) picpic
      2. Gonadotropin B chain [63396]
        1. Human (Homo sapiens) [TaxId: 9606] [63398] (3) picpic
      3. Follicle stimulating hormone, follitropin, beta chain [64562]
        1. Human (Homo sapiens) [TaxId: 9606] [64563] (3) picpic
    6. Interleukin 17F, IL-17F [69955] (1)
      1. Interleukin 17F, IL-17F [69956]
        1. Human (Homo sapiens) [TaxId: 9606] [69957] (1) picpic
    7. Coagulogen [57531] (1)
      1. Coagulogen [57532]
        1. Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853] [57533] (1) picpic
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk