Structural Classification of Proteins
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Superfamily: Cystine-knot cytokines

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Small proteins [56992]
    Usually dominated by metal ligand, heme, and/or disulfide bridges
  3. Fold: Cystine-knot cytokines [57500]
    disulfide-rich fold; common core is all-beta
  4. Superfamily: Cystine-knot cytokines [57501]
    link to SUPERFAMILY database - Superfamily

Families:

  1. Platelet-derived growth factor-like [57502] (5)
    1. Platelet-derived growth factor BB [57503]
      1. Human (Homo sapiens) [TaxId: 9606] [57504] (1)
        1. 1pdg picpic
          1. chain a [44748] picpiclink
          2. chain b [44749] picpiclink
          3. chain c [44750] picpiclink
    2. Vascular endothelial growth factor, VEGF [57505]
      1. Human (Homo sapiens) [TaxId: 9606] [57506] (25)
        SQ P15692 40-133
        1. 1flt picpicxref
          1. chain v [44751] picpiclink
          2. chain w [44752] picpiclink
        2. 1vpp picpic
          1. chain v [44753] picpiclink
          2. chain w [44754] picpiclink
        3. 2vpf picpic
          1. chain a [44755] picpiclink
          2. chain b [44756] picpiclink
          3. chain c [44757] picpiclink
          4. chain d [44758] picpiclink
          5. chain e [44759] picpiclink
          6. chain f [44760] picpiclink
          7. chain g [44761] picpiclink
          8. chain h [44762] picpiclink
        4. 1bj1 picpicxrefxrefxrefxref
          complexed with so4
          1. chain v [44763] picpiclink
          2. chain w [44764] picpiclink
        5. 1vpf picpic
          1. chain a [44767] picpiclink
          2. chain b [44768] picpiclink
          3. chain c [44769] picpiclink
          4. chain d [44770] picpiclink
        6. 1cz8 picpicxrefxrefxrefxref
          complexed with so4; mutant
          1. chain v [44765] picpiclink
          2. chain w [44766] picpiclink
        7. 1tzh picpicxrefxrefxrefxref
          1. chain v [107485] picpiclink
          2. chain w [107486] picpiclink
        8. 2fjg picpicxrefxrefxrefxref
          automatically matched to d1katv_
          complexed with so4
          1. region v:14-108 [133607] picpiclink
        9. 2fjg picpicxrefxrefxrefxref
          automatically matched to d1katv_
          complexed with so4
          1. region w:14-107 [133608] picpiclink
        10. 1tzi picpicxrefxrefxrefxref
          1. chain v [107491] picpiclink
        11. 1qty picpicxref
          1. chain v [44771] picpiclink
          2. chain w [44772] picpiclink
          3. chain r [44773] picpiclink
          4. chain s [44774] picpiclink
        12. 2fjh picpic
          automatically matched to d1katv_
          1. region v:14-108 [133609] picpiclink
        13. 2fjh picpic
          automatically matched to d1katv_
          1. region w:14-108 [133610] picpiclink
        14. 2qr0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1katv_
          1. region c:13-107 [151238] picpiclink
        15. 2qr0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1katv_
          1. region d:13-107 [151239] picpiclink
        16. 2qr0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1katv_
          1. region i:13-107 [151248] picpiclink
        17. 2qr0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1katv_
          1. region j:13-107 [151249] picpiclink
        18. 2qr0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1katv_
          1. region o:13-107 [151258] picpiclink
        19. 2qr0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1katv_
          1. region p:13-107 [151259] picpiclink
        20. 2qr0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1katv_
          1. region u:13-107 [151268] picpiclink
        21. 2qr0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1katv_
          1. region v:13-107 [151269] picpiclink
        22. 1kat picpic
          complexed with a phage-derived peptide antagonist, chains X and Y
          1. chain v [77309] picpiclink
          2. chain w [77310] picpiclink
        23. 1mkk picpic
          disulfide deficient mutant
          1. chain a [79240] picpiclink
          2. chain b [79241] picpiclink
        24. 1mjv picpic
          disulfide deficient mutant
          1. chain a [79214] picpiclink
          2. chain b [79215] picpiclink
        25. 1mkg picpic
          disulfide deficient mutant
          1. chain a [79234] picpiclink
          2. chain b [79235] picpiclink
          3. chain c [79236] picpiclink
          4. chain d [79237] picpiclink
      2. Aspic viper (Vipera aspis aspis) [TaxId: 8706] [118255] (1)
        SQ P67863 1-100 # svVEGF (toxin); vammin
        1. 1wq8 picpic
          complexed with tmn
          1. chain a [114832] picpiclink
      3. Russell's viper (Daboia russelli russelli) [TaxId: 8707] [118256] (1)
        SQ P67861 2-95 # svVEGF (toxin); VR-1
        1. 1wq9 picpic
          1. chain a [114833] picpiclink
          2. chain b [114834] picpiclink
    3. Placenta growth factor-1, PLGF-1 [64560]
      1. Human (Homo sapiens) [TaxId: 9606] [64561] (2)
        1. 1fzv picpic
          complexed with mpd
          1. chain a [60159] picpiclink
          2. chain b [60160] picpiclink
        2. 1rv6 picpicxref
          complexed with b3p
          1. chain v [97912] picpiclink
          2. chain w [97913] picpiclink
  2. Transforming growth factor (TGF)-beta [57507] (7)
    1. TGF-beta3 [57508]
      1. Human (Homo sapiens) [TaxId: 9606] [57509] (4)
        1. 1tgj picpic
          complexed with dio
          1. chain a [44775] picpiclink
        2. 1ktz picpicxref
          complexed with the type II receptor extracellular domain
          1. chain a [68867] picpiclink
        3. 2pjy picpicxref
          automatically matched to d1tgja_
          mutant
          1. region a:1-112 [149583] picpiclink
        4. 1tgk picpic
          1. chain a [44776] picpiclink
    2. TGF-beta2 [57510]
      1. Human (Homo sapiens) [TaxId: 9606] [57511] (2)
        1. 2tgi picpic
          1. chain a [44777] picpiclink
        2. 1tfg picpic
          1. chain a [44778] picpiclink
    3. TGF-beta1 [57512]
      1. Human (Homo sapiens) [TaxId: 9606] [57513] (3)
        1. 1kld picpic
          1. chain a [44781] picpiclink
          2. chain b [44782] picpiclink
        2. 1kla picpic
          1. chain a [44779] picpiclink
          2. chain b [44780] picpiclink
        3. 1klc picpic
          1. chain a [44783] picpiclink
          2. chain b [44784] picpiclink
    4. Bone morphogenetic protein-7 (BMP-7) [57514]
      1. Human (Homo sapiens) [TaxId: 9606] [57515] (4)
        1. 1lxi picpic
          complexed with nag
          1. chain a [84735] picpiclink
        2. 1m4u picpicxref
          complexed with nag
          1. chain l [78626] picpiclink
        3. 1bmp picpic
          1. chain a [44785] picpiclink
        4. 1lx5 picpicxref
          complexed with the extracellular domain of activin type II receptor
          complexed with man, nag
          1. chain a [84732] picpiclink
    5. Bone morphogenetic protein-2 (BMP-2) [57516]
      1. Human (Homo sapiens) [TaxId: 9606] [57517] (15)
        1. 2h62 picpicxrefxref
          automatically matched to d3bmpa_
          1. region a:12-114 [136177] picpiclink
        2. 2h62 picpicxrefxref
          automatically matched to d3bmpa_
          1. region b:12-114 [136178] picpiclink
        3. 2h64 picpicxrefxref
          mutant
          1. region a:10-114 [145282] picpiclink
        4. 1rew picpicxref
          1. chain a [97334] picpiclink
          2. chain b [97335] picpiclink
        5. 2goo picpicxrefxrefxrefxref
          automatically matched to d3bmpa_
          complexed with ndg
          1. region a:12-114 [135441] picpiclink
        6. 2goo picpicxrefxrefxrefxref
          automatically matched to d3bmpa_
          complexed with ndg
          1. region d:12-114 [135444] picpiclink
        7. 2qj9 picpic
          automatically matched to d3bmpa_
          mutant
          1. region a:11-114 [150823] picpiclink
        8. 2qj9 picpic
          automatically matched to d3bmpa_
          mutant
          1. region b:12-114 [150824] picpiclink
        9. 1reu picpic
          complexed with mpd; mutant
          1. chain a [97333] picpiclink
        10. 3bmp picpic
          complexed with mpd
          1. chain a [44788] picpiclink
        11. 1es7 picpicxref
          1. chain a [44786] picpiclink
          2. chain c [44787] picpiclink
        12. 2qjb picpic
          automatically matched to d3bmpa_
          complexed with cl; mutant
          1. region a:12-114 [150827] picpiclink
        13. 2qjb picpic
          automatically matched to d3bmpa_
          complexed with cl; mutant
          1. region b:11-114 [150828] picpiclink
        14. 2qja picpic
          automatically matched to d3bmpa_
          mutant
          1. region a:11-114 [150825] picpiclink
        15. 2qja picpic
          automatically matched to d3bmpa_
          mutant
          1. region b:11-114 [150826] picpiclink
    6. Activin A (Inhibin beta A) [90170]
      1. Human (Homo sapiens) [TaxId: 9606] [90171] (14)
        SQ P08476 311-426
        1. 2arp picpic
          automatically matched to d1s4yb_
          complexed with 1pg, gol, ni
          1. region a:1-116 [127217] picpiclink
        2. 2arv picpic
          automatically matched to d1s4yb_
          complexed with 1pg, gol, so4
          1. region a:1-116 [127218] picpiclink
        3. 2arv picpic
          automatically matched to d1s4yb_
          complexed with 1pg, gol, so4
          1. region b:1-116 [127219] picpiclink
        4. 3b4v picpic
          automatically matched to d1s4yb_
          complexed with edo, nag, so4
          1. region a:1-116 [154825] picpiclink
        5. 3b4v picpic
          automatically matched to d1s4yb_
          complexed with edo, nag, so4
          1. region b:1-116 [154826] picpiclink
        6. 3b4v picpic
          automatically matched to d1s4yb_
          complexed with edo, nag, so4
          1. region e:1-116 [154827] picpiclink
        7. 3b4v picpic
          automatically matched to d1s4yb_
          complexed with edo, nag, so4
          1. region f:1-116 [154828] picpiclink
        8. 1s4y picpicxref
          Structural genomics target
          1. chain b [105257] picpiclink
          2. chain d [105259] picpiclink
        9. 2b0u picpic
          automatically matched to d1s4yb_
          complexed with ir3, mli, mpd
          1. region a:1-116 [127648] picpiclink
        10. 2b0u picpic
          automatically matched to d1s4yb_
          complexed with ir3, mli, mpd
          1. region b:1-116 [127649] picpiclink
        11. 1nys picpicxref
          complexed with the extracellular domain of activin type II receptor
          1. chain b [86414] picpiclink
          2. chain d [86416] picpiclink
        12. 1nyu picpicxref
          complexed with the extracellular domain of activin type II receptor
          1. chain b [86426] picpiclink
          2. chain d [86428] picpiclink
        13. 2p6a picpic
          automatically matched to d1s4yb_
          1. region a:1-116 [139509] picpiclink
        14. 2p6a picpic
          automatically matched to d1s4yb_
          1. region b:1-116 [139510] picpiclink
    7. Glial cell-derived neurotrophic factor, GDNF [57518]
      1. Rat (Rattus norvegicus) [TaxId: 10116] [57519] (1)
        1. 1agq picpic
          1. chain a [44789] picpiclink
          2. chain b [44790] picpiclink
          3. chain c [44791] picpiclink
          4. chain d [44792] picpiclink
  3. Noggin [82904] (1)
    1. Noggin [82905]
      BMP-7 antagonist
      1. Human (Homo sapiens) [TaxId: 9606] [82906] (1)
        1. 1m4u picpicxref
          complexed with nag
          1. chain a [78625] picpiclink
  4. Neurotrophin [57520] (5)
    1. Brain-derived neurotrophic factor, BDNF [88882]
      1. Human (Homo sapiens) [TaxId: 9606] [88883] (2)
        1. 1bnd picpicxref
          heterodimer with NT3
          complexed with ipa
          1. chain a [44793] picpiclink
        2. 1b8m picpicxref
          heterodimer with NT4
          1. chain a [44797] picpiclink
    2. Neurotrophin 3, NT3 [88884]
      1. Human (Homo sapiens) [TaxId: 9606] [88885] (5)
        1. 1bnd picpicxref
          heterodimer with BDNF
          complexed with ipa
          1. chain b [44794] picpiclink
        2. 1b8k picpic
          1. chain a [44795] picpiclink
        3. 1nt3 picpic
          1. chain a [44796] picpiclink
        4. 3buk picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1nt3a_
          complexed with nag
          1. region a:8-115 [155610] picpiclink
        5. 3buk picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to d1nt3a_
          complexed with nag
          1. region b:8-115 [155611] picpiclink
    3. Neurotrophin 4, NT4 [57523]
      1. Human (Homo sapiens) [TaxId: 9606] [57524] (3)
        1. 1hcf picpicxref
          homodimer
          complexed with so4
          1. chain a [65788] picpiclink
          2. chain b [65789] picpiclink
        2. 1b8m picpicxref
          heterodimer with BDNF
          1. chain b [44798] picpiclink
        3. 1b98 picpic
          homodimer
          complexed with cl
          1. chain a [44799] picpiclink
          2. chain m [44800] picpiclink
    4. beta-Nerve growth factor [57525]
      1. Mouse (Mus musculus) [TaxId: 10090] [57526] (3)
        1. 1bet picpic
          1. chain a [44801] picpiclink
        2. 1btg picpic
          complexed with zn; mutant
          1. chain a [44802] picpiclink
          2. chain b [44803] picpiclink
          3. chain c [44804] picpiclink
        3. 1sgf picpicxref
          complexed with nag, zn
          1. chain b [44805] picpiclink
          2. chain y [44806] picpiclink
      2. Human (Homo sapiens) [TaxId: 9606] [57527] (4)
        SQ P01138
        1. 1www picpicxref
          1. chain v [44807] picpiclink
          2. chain w [44808] picpiclink
        2. 1sg1 picpicxref
          complexed with cl
          1. chain a [105513] picpiclink
          2. chain b [105514] picpiclink
        3. 2ifg picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1wwww_
          complexed with bma, man, nag, ndg
          1. region e:2-115 [137341] picpiclink
        4. 2ifg picpicxrefxrefxrefxrefxrefxref
          automatically matched to d1wwww_
          complexed with bma, man, nag, ndg
          1. region f:2-115 [137342] picpiclink
  5. Gonadodropin/Follitropin [57528] (3)
    1. Glycoprotein hormones alpha chain (Gonadotropin A, Follitropin alpha) [63395]
      1. Human (Homo sapiens) [TaxId: 9606] [63397] (9)
        1. 1hcn picpicxref
          complexed with nag
          1. chain a [44809] picpiclink
        2. 1xwd picpicxrefxrefxref
          automatically matched to d1dz7a_
          complexed with bma, nag, so4
          1. region a:3-92 [122390] picpiclink
        3. 1xwd picpicxrefxrefxref
          automatically matched to d1dz7a_
          complexed with bma, nag, so4
          1. region d:6-92 [122391] picpiclink
        4. 1fl7 picpicxref
          complexed with man, nag, so4; mutant
          1. chain a [59871] picpiclink
          2. chain c [59873] picpiclink
        5. 1hrp picpicxref
          complexed with nag
          1. chain a [44811] picpiclink
        6. 1qfw picpicxrefxrefxrefxrefxref
          complexed with nag
          1. chain a [44813] picpiclink
        7. 1hd4 picpic
          complexed with gal, man, nag
          1. chain a [44816] picpiclink
        8. 1dz7 picpic
          1. chain a [44815] picpiclink
        9. 1e9j picpic
          complexed with nag
          1. chain a [70085] picpiclink
    2. Gonadotropin B chain [63396]
      1. Human (Homo sapiens) [TaxId: 9606] [63398] (3)
        1. 1hcn picpicxref
          complexed with nag
          1. chain b [44810] picpiclink
        2. 1hrp picpicxref
          complexed with nag
          1. chain b [44812] picpiclink
        3. 1qfw picpicxrefxrefxrefxrefxref
          complexed with nag
          1. chain b [44814] picpiclink
    3. Follicle stimulating hormone, follitropin, beta chain [64562]
      1. Human (Homo sapiens) [TaxId: 9606] [64563] (3)
        1. 1xwd picpicxrefxrefxref
          complexed with bma, nag, so4
          1. region b:3-107 [144580] picpiclink
        2. 1xwd picpicxrefxrefxref
          automatically matched to 1XWD B:3-107
          complexed with bma, nag, so4
          1. region e:3-107 [144582] picpiclink
        3. 1fl7 picpicxref
          complexed with man, nag, so4; mutant
          1. chain b [59872] picpiclink
          2. chain d [59874] picpiclink
  6. Interleukin 17F, IL-17F [69955] (1)
    1. Interleukin 17F, IL-17F [69956]
      1. Human (Homo sapiens) [TaxId: 9606] [69957] (1)
        1. 1jpy picpic
          complexed with nag, so4
          1. chain a [67065] picpiclink
          2. chain b [67066] picpiclink
          3. chain x [67067] picpiclink
          4. chain y [67068] picpiclink
  7. Coagulogen [57531] (1)
    1. Coagulogen [57532]
      1. Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853] [57533] (1)
        1. 1aoc picpic
          complexed with so4
          1. chain a [44817] picpiclink
          2. chain b [44818] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk