Fold: TNF receptor-like

duplication: consists of three similar disulfide-rich domains

Lineage:

1. Root: scop
2. Class: Small proteins [56992]
   Usually dominated by metal ligand, heme, and/or disulfide bridges
3. Fold: TNF receptor-like [57585]
   duplication: consists of three similar disulfide-rich domains

Superfamilies:

1. TNF receptor-like [57586] (2)
   uperfamily
   1. TNF receptor-like [57587] (5)
      Pfam 00020; TNFR/NGFR cysteine-rich region
      1. Tumor necrosis factor (TNF) receptor [57588]
         1. Human (Homo sapiens) [TaxId: 9606] [57589] (4)
            1. 1ext
               complexed with mg, so4
               1. region a:13-71 [44900]
               2. region a:72-115 [44901]
               3. region a:116-172 [44902]
               4. region b:11-71 [44903]
               5. region b:72-115 [44904]
               6. region b:116-168 [44905]
            2. 1ncf
               mutant
               1. region a:11-71 [44906]
               2. region a:72-115 [44907]
               3. region a:116-150 [44908]
               4. region b:14-71 [44909]
               5. region b:72-115 [44910]
               6. region b:116-155 [44911]
            3. 1tnr
               1. region r:15-71 [44912]
               2. region r:72-115 [44913]
               3. region r:116-153 [44914]
            4. 1ft4
               complexed with 703
               1. region a:11-71 [65048]
               2. region a:72-115 [65049]
               3. region a:116-150 [65050]
               4. region b:14-71 [65051]
               5. region b:72-115 [65052]
               6. region b:116-155 [65053]
      2. Death receptor-5 (dr5) fragment [57590]
         1. Human (Homo sapiens) [TaxId: 9606] [57591] (12)
            1. 1d0g
               complexed with cl, zn
               1. region r:21-61 [44918]
               2. region r:62-101 [44919]
               3. region r:102-128 [44920]
               4. region s:21-61 [44921]
               5. region s:62-101 [44922]
               6. region s:102-130 [44923]
               7. region t:21-61 [44924]
               8. region t:62-101 [44925]
               9. region t:102-130 [44926]
            2. 2h9g
               automatically matched to d1d0gr1
               1. region r:21-61 [136261]
            3. 2h9g
               automatically matched to d1d0gr2
               1. region r:62-101 [136262]
            4. 2h9g
               automatically matched to d1d4va3
               1. region r:102-128 [136263]
            5. 1d4v
               1. region a:69-114 [44915]
               2. region a:115-154 [44916]
               3. region a:155-185 [44917]
            6. 1du3
               complexed with zn
               1. region a:21-61 [44927]
               2. region a:62-101 [44928]
               3. region a:102-123 [44929]
               4. region b:21-61 [44930]
               5. region b:62-101 [44931]
               6. region b:102-130 [44932]
               7. region c:21-61 [44933]
               8. region c:62-101 [44934]
               9. region c:102-123 [44935]
               10. region g:21-61 [44936]
               11. region g:62-101 [44937]
               12. region g:102-128 [44938]
               13. region h:21-61 [44939]
               14. region h:62-101 [44940]
               15. region h:102-123 [44941]
               16. region i:21-61 [44942]
               17. region i:62-101 [44943]
               18. region i:102-123 [44944]
            7. 1za3
               automatically matched to d1d0gr1
               1. region r:21-61 [124795]
            8. 1za3
               automatically matched to d1d0gr2
               1. region r:62-101 [124796]
            9. 1za3
               automatically matched to d1d4va3
               1. region r:102-123 [124797]
            10. 1za3
                automatically matched to d1d0gr1
                1. region s:21-61 [124798]
            11. 1za3
                automatically matched to d1d0gr2
                1. region s:62-101 [124799]
            12. 1za3
                automatically matched to d1d4va3
                1. region s:102-123 [124800]
      3. Cellular receptor HveA [64568]
         1. Human (Homo sapiens) [TaxId: 9606] [64569] (5)
            1. 1jma
               complexed with nag, so4; mutant
               1. region b:4-59 [63178]
               2. region b:60-105 [63179]
            2. 2aw2
               automatically matched to d1jmab1
               complexed with ful, nag, ni
               1. region b:4-59 [127389]
            3. 2aw2
               automatically matched to d1jmab2
               complexed with ful, nag, ni
               1. region b:60-103 [127390]
            4. 2aw2
               automatically matched to d1jmab1
               complexed with ful, nag, ni
               1. region y:4-59 [127391]
            5. 2aw2
               automatically matched to d1jmab2
               complexed with ful, nag, ni
               1. region y:60-103 [127392]
      4. Low affinity neurotrophin receptor p75NTR [111413]
         1. Rat (Rattus norvegicus) [TaxId: 10116] [111414] (9)
            SQ P07174 31-190 # fragment contains 3 complete and 1 partial (C-terminal) 'domains'
            1. 1sg1
               complexed with cl
               1. region x:2-56 [105515]
               2. region x:57-95 [105516]
               3. region x:96-137 [105517]
               4. region x:138-161 [105518]
            2. 3buk
               automatically matched to d1sg1x1
               complexed with nag
               1. region c:3-56 [155612]
            3. 3buk
               automatically matched to d1sg1x2
               complexed with nag
               1. region c:57-95 [155613]
            4. 3buk
               automatically matched to d1sg1x3
               complexed with nag
               1. region c:96-137 [155614]
            5. 3buk
               automatically matched to d1sg1x4
               complexed with nag
               1. region c:138-161 [155615]
            6. 3buk
               automatically matched to d1sg1x1
               complexed with nag
               1. region d:3-56 [155616]
            7. 3buk
               automatically matched to d1sg1x2
               complexed with nag
               1. region d:57-95 [155617]
            8. 3buk
               automatically matched to d1sg1x3
               complexed with nag
               1. region d:96-137 [155618]
            9. 3buk
               automatically matched to d1sg1x4
               complexed with nag
               1. region d:138-161 [155619]
      5. Tumor necrosis factor receptor superfamily member 4, OX40L receptor [144119]
         1. Human (Homo sapiens) [TaxId: 9606] [144120] (9)
            SQ P43489 143-168! SQ P43489 29-82! SQ P43489 83-142
            1. 2hey
               automatically matched to 2HEV R:83-142
               complexed with so4
               1. region r:83-142 [136367]
            2. 2hey
               automatically matched to 2HEV R:143-168
               complexed with so4
               1. region r:143-166 [136368]
            3. 2hey
               automatically matched to 2HEV R:29-82
               complexed with so4
               1. region r:29-82 [136369]
            4. 2hey
               automatically matched to 2HEV R:83-142
               complexed with so4
               1. region t:83-142 [136370]
            5. 2hey
               automatically matched to 2HEV R:143-168
               complexed with so4
               1. region t:143-166 [136371]
            6. 2hey
               automatically matched to 2HEV R:29-82
               complexed with so4
               1. region t:29-82 [136372]
            7. 2hev
               complexed with nag; mutant
               1. region r:83-142 [136361]
            8. 2hev
               complexed with nag; mutant
               1. region r:143-168 [136362]
            9. 2hev
               complexed with nag; mutant
               1. region r:29-82 [136363]
   2. BAFF receptor-like [90174] (3)
      only fragments of the receptor structures are available; no domain division is provided here
      1. Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3 [90175]
         1. Human (Homo sapiens) [TaxId: 9606] [90176] (2)
            also includes the PDB entry (1p0t) that together with the entry (1otz) provides the multimeric structure of the complex of BAFF receptor with BAFF. In these entries protein chains are designated by both upper case and lower case letters creating problems with its processing and presentation in SCOP
            1. 1oqe
               1. chain k [87296]
               2. chain l [87297]
               3. chain m [87298]
               4. chain n [87299]
               5. chain o [87300]
               6. chain p [87301]
               7. chain q [87302]
               8. chain r [87303]
            2. 1osx
               1. chain a [87391]
      2. Tumor necrosis factor receptor superfamily member 17, BCMA [90177]
         1. Human (Homo sapiens) [TaxId: 9606] [90178] (2)
            SQ Q02223 8-43
            1. 1xu2
               complexed with ni
               1. chain r [116042]
               2. chain s [116043]
               3. chain t [116044]
            2. 1oqd
               1. chain k [87278]
               2. chain l [87279]
               3. chain m [87280]
               4. chain n [87281]
               5. chain o [87282]
               6. chain p [87283]
               7. chain q [87284]
               8. chain r [87285]
      3. Tumor necrosis factor receptor superfamily member 13B, TACI [118262]
         1. Human (Homo sapiens) [TaxId: 9606] [118263] (2)
            SQ O14836 68-109
            1. 1xu1
               complexed with ni
               1. chain r [116036]
               2. chain s [116037]
               3. chain t [116038]
            2. 1xut
               1. chain a [116066]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk