Structural Classification of Proteins

Superfamily: TNF receptor-like

: uperfamily

Lineage:

Root: scop
Class: Small proteins [56992]
Usually dominated by metal ligand, heme, and/or disulfide bridges
Fold: TNF receptor-like [57585]
duplication: consists of three similar disulfide-rich domains
Superfamily: TNF receptor-like [57586]
uperfamily

Families:

TNF receptor-like [57587] (5)
Pfam 00020; TNFR/NGFR cysteine-rich region
1. Tumor necrosis factor (TNF) receptor [57588]
  1. Human (Homo sapiens) [TaxId: 9606] [57589] (4)
    1. 1ext
      complexed with mg, so4
      1. region a:13-71 [44900]
      2. region a:72-115 [44901]
      3. region a:116-172 [44902]
      4. region b:11-71 [44903]
      5. region b:72-115 [44904]
      6. region b:116-168 [44905]
    2. 1ncf
      mutant
      1. region a:11-71 [44906]
      2. region a:72-115 [44907]
      3. region a:116-150 [44908]
      4. region b:14-71 [44909]
      5. region b:72-115 [44910]
      6. region b:116-155 [44911]
    3. 1tnr
      1. region r:15-71 [44912]
      2. region r:72-115 [44913]
      3. region r:116-153 [44914]
    4. 1ft4
      complexed with 703
      1. region a:11-71 [65048]
      2. region a:72-115 [65049]
      3. region a:116-150 [65050]
      4. region b:14-71 [65051]
      5. region b:72-115 [65052]
      6. region b:116-155 [65053]
2. Death receptor-5 (dr5) fragment [57590]
  1. Human (Homo sapiens) [TaxId: 9606] [57591] (12)
    1. 1d0g
      complexed with cl, zn
      1. region r:21-61 [44918]
      2. region r:62-101 [44919]
      3. region r:102-128 [44920]
      4. region s:21-61 [44921]
      5. region s:62-101 [44922]
      6. region s:102-130 [44923]
      7. region t:21-61 [44924]
      8. region t:62-101 [44925]
      9. region t:102-130 [44926]
    2. 2h9g
      automatically matched to d1d0gr1
      1. region r:21-61 [136261]
    3. 2h9g
      automatically matched to d1d0gr2
      1. region r:62-101 [136262]
    4. 2h9g
      automatically matched to d1d4va3
      1. region r:102-128 [136263]
    5. 1d4v
      1. region a:69-114 [44915]
      2. region a:115-154 [44916]
      3. region a:155-185 [44917]
    6. 1du3
      complexed with zn
      1. region a:21-61 [44927]
      2. region a:62-101 [44928]
      3. region a:102-123 [44929]
      4. region b:21-61 [44930]
      5. region b:62-101 [44931]
      6. region b:102-130 [44932]
      7. region c:21-61 [44933]
      8. region c:62-101 [44934]
      9. region c:102-123 [44935]
      10. region g:21-61 [44936]
      11. region g:62-101 [44937]
      12. region g:102-128 [44938]
      13. region h:21-61 [44939]
      14. region h:62-101 [44940]
      15. region h:102-123 [44941]
      16. region i:21-61 [44942]
      17. region i:62-101 [44943]
      18. region i:102-123 [44944]
    7. 1za3
      automatically matched to d1d0gr1
      1. region r:21-61 [124795]
    8. 1za3
      automatically matched to d1d0gr2
      1. region r:62-101 [124796]
    9. 1za3
      automatically matched to d1d4va3
      1. region r:102-123 [124797]
    10. 1za3
      automatically matched to d1d0gr1
      1. region s:21-61 [124798]
    11. 1za3
      automatically matched to d1d0gr2
      1. region s:62-101 [124799]
    12. 1za3
      automatically matched to d1d4va3
      1. region s:102-123 [124800]
3. Cellular receptor HveA [64568]
  1. Human (Homo sapiens) [TaxId: 9606] [64569] (5)
    1. 1jma
      complexed with nag, so4; mutant
      1. region b:4-59 [63178]
      2. region b:60-105 [63179]
    2. 2aw2
      automatically matched to d1jmab1
      complexed with ful, nag, ni
      1. region b:4-59 [127389]
    3. 2aw2
      automatically matched to d1jmab2
      complexed with ful, nag, ni
      1. region b:60-103 [127390]
    4. 2aw2
      automatically matched to d1jmab1
      complexed with ful, nag, ni
      1. region y:4-59 [127391]
    5. 2aw2
      automatically matched to d1jmab2
      complexed with ful, nag, ni
      1. region y:60-103 [127392]
4. Low affinity neurotrophin receptor p75NTR [111413]
  1. Rat (Rattus norvegicus) [TaxId: 10116] [111414] (9)
    SQ P07174 31-190 # fragment contains 3 complete and 1 partial (C-terminal) 'domains'
    1. 1sg1
      complexed with cl
      1. region x:2-56 [105515]
      2. region x:57-95 [105516]
      3. region x:96-137 [105517]
      4. region x:138-161 [105518]
    2. 3buk
      automatically matched to d1sg1x1
      complexed with nag
      1. region c:3-56 [155612]
    3. 3buk
      automatically matched to d1sg1x2
      complexed with nag
      1. region c:57-95 [155613]
    4. 3buk
      automatically matched to d1sg1x3
      complexed with nag
      1. region c:96-137 [155614]
    5. 3buk
      automatically matched to d1sg1x4
      complexed with nag
      1. region c:138-161 [155615]
    6. 3buk
      automatically matched to d1sg1x1
      complexed with nag
      1. region d:3-56 [155616]
    7. 3buk
      automatically matched to d1sg1x2
      complexed with nag
      1. region d:57-95 [155617]
    8. 3buk
      automatically matched to d1sg1x3
      complexed with nag
      1. region d:96-137 [155618]
    9. 3buk
      automatically matched to d1sg1x4
      complexed with nag
      1. region d:138-161 [155619]
5. Tumor necrosis factor receptor superfamily member 4, OX40L receptor [144119]
  1. Human (Homo sapiens) [TaxId: 9606] [144120] (9)
    SQ P43489 143-168! SQ P43489 29-82! SQ P43489 83-142
    1. 2hey
      automatically matched to 2HEV R:83-142
      complexed with so4
      1. region r:83-142 [136367]
    2. 2hey
      automatically matched to 2HEV R:143-168
      complexed with so4
      1. region r:143-166 [136368]
    3. 2hey
      automatically matched to 2HEV R:29-82
      complexed with so4
      1. region r:29-82 [136369]
    4. 2hey
      automatically matched to 2HEV R:83-142
      complexed with so4
      1. region t:83-142 [136370]
    5. 2hey
      automatically matched to 2HEV R:143-168
      complexed with so4
      1. region t:143-166 [136371]
    6. 2hey
      automatically matched to 2HEV R:29-82
      complexed with so4
      1. region t:29-82 [136372]
    7. 2hev
      complexed with nag; mutant
      1. region r:83-142 [136361]
    8. 2hev
      complexed with nag; mutant
      1. region r:143-168 [136362]
    9. 2hev
      complexed with nag; mutant
      1. region r:29-82 [136363]
BAFF receptor-like [90174] (3)
only fragments of the receptor structures are available; no domain division is provided here
1. Tumor necrosis factor receptor superfamily member 13c, BAFF-R, Br3 [90175]
  1. Human (Homo sapiens) [TaxId: 9606] [90176] (2)
    also includes the PDB entry (1p0t) that together with the entry (1otz) provides the multimeric structure of the complex of BAFF receptor with BAFF. In these entries protein chains are designated by both upper case and lower case letters creating problems with its processing and presentation in SCOP
    1. 1oqe
      1. chain k [87296]
      2. chain l [87297]
      3. chain m [87298]
      4. chain n [87299]
      5. chain o [87300]
      6. chain p [87301]
      7. chain q [87302]
      8. chain r [87303]
    2. 1osx
      1. chain a [87391]
2. Tumor necrosis factor receptor superfamily member 17, BCMA [90177]
  1. Human (Homo sapiens) [TaxId: 9606] [90178] (2)
    SQ Q02223 8-43
    1. 1xu2
      complexed with ni
      1. chain r [116042]
      2. chain s [116043]
      3. chain t [116044]
    2. 1oqd
      1. chain k [87278]
      2. chain l [87279]
      3. chain m [87280]
      4. chain n [87281]
      5. chain o [87282]
      6. chain p [87283]
      7. chain q [87284]
      8. chain r [87285]
3. Tumor necrosis factor receptor superfamily member 13B, TACI [118262]
  1. Human (Homo sapiens) [TaxId: 9606] [118263] (2)
    SQ O14836 68-109
    1. 1xu1
      complexed with ni
      1. chain r [116036]
      2. chain s [116037]
      3. chain t [116038]
    2. 1xut
      1. chain a [116066]