Structural Classification of Proteins
home mail help root up expand collapse

Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins

Lineage:

  1. Root: scop
  2. Class: Small proteins [56992]
    Usually dominated by metal ligand, heme, and/or disulfide bridges
  3. Fold: Glucocorticoid receptor-like (DNA-binding domain) [57715]
    alpha+beta metal(zinc)-bound fold
  4. Superfamily: Glucocorticoid receptor-like (DNA-binding domain) [57716]
    link to SUPERFAMILY database - Superfamily
  5. Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins [81627]

Protein Domains:

  1. DNA repair protein MutM (Fpg) [81622]
    1. Thermus thermophilus [TaxId: 274] [81610] (1)
      1. 1ee8 picpicxrefxref
        complexed with zn
        1. region a:211-266 [75825] picpiclink
        2. region b:211-266 [75828] picpiclink
    2. Bacillus stearothermophilus [TaxId: 1422] [81613] (9)
      1. 1r2z picpicxrefxref
        bound to 5,6-Dihydrouracil (DhU) containing DNA
        complexed with dhu, zn; mutant
        1. region a:229-274 [96894] picpiclink
      2. 1l1z picpicxrefxref
        covalent-DNA intermediate
        complexed with ped, zn
        1. region a:233-274 [75913] picpiclink
      3. 1l1t picpicxrefxref
        bound to abasic-site containing DNA
        complexed with hpd, zn
        1. region a:235-274 [75910] picpiclink
      4. 1l2d picpicxrefxref
        DNA estranged guanine mismatch recognition complex
        complexed with hpd, zn
        1. region a:235-274 [75922] picpiclink
      5. 1l2c picpicxrefxref
        DNA estranged thymine mismatch recognition complex
        complexed with hpd, zn
        1. region a:235-274 [75919] picpiclink
      6. 1r2y picpicxrefxref
        bound to 8-Oxoguanine (OxoG) containing DNA
        complexed with 8og, zn; mutant
        1. region a:229-274 [96891] picpiclink
      7. 2f5q picpicxrefxref
        automatically matched to d1r2ya3
        complexed with 8og, zn; mutant
        1. region a:229-274 [133006] picpiclink
      8. 1l2b picpicxrefxref
        DNA end-product structure
        complexed with ad2, zn
        1. region a:233-274 [75916] picpiclink
      9. 2f5s picpicxrefxref
        automatically matched to d1r2ya3
        complexed with 8og, zn; mutant
        1. region a:229-274 [133009] picpiclink
    3. Escherichia coli [TaxId: 562] [81618] (1)
      1. 1k82 picpicxrefxref
        covalently trapped with DNA
        complexed with ped, zn
        1. region a:225-268 [75868] picpiclink
        2. region b:225-268 [75871] picpiclink
        3. region c:225-268 [75874] picpiclink
        4. region d:225-268 [75877] picpiclink
    4. Lactococcus lactis [TaxId: 1358] [81619] (7)
      SQ P42371
      1. 1tdz picpicxrefxref
        complexed with fox, gol, zn
        1. region a:225-271 [106789] picpiclink
      2. 1pjj picpicxrefxref
        complexed with 3dr, gol, zn; mutant
        1. region a:224-271 [104166] picpiclink
      3. 1xc8 picpicxrefxref
        automatically matched to d1pjia3
        complexed with fox, gol, zn
        1. region a:223-271 [121854] picpiclink
      4. 1pji picpicxrefxref
        complexed with cry, pdi, zn
        1. region a:223-271 [104163] picpiclink
      5. 1pm5 picpicxrefxref
        complexed with 3dr, gol, zn
        1. region a:223-271 [104192] picpiclink
      6. 1nnj picpicxrefxref
        complexed with cry, pdi, zn; mutant
        1. region a:224-271 [80671] picpiclink
      7. 1kfv picpicxrefxref
        complexed with cry, mse, pdi, zn; mutant
        1. region a:227-271 [75888] picpiclink
        2. region b:229-271 [75891] picpiclink
  2. Endonuclease VIII [82917]
    1. Escherichia coli [TaxId: 562] [82918] (9)
      SQ P50465
      1. 1k3x picpicxrefxref
        complexed with bro, gol, ped, so4, zn
        1. region a:223-262 [77244] picpiclink
      2. 2ea0 picpicxrefxref
        automatically matched to d1k3wa3
        complexed with gol, ped, so4, zn
        1. region a:223-262 [146756] picpiclink
      3. 1k3w picpicxrefxref
        complexed with ped, so4, zn
        1. region a:223-262 [77241] picpiclink
      4. 2opf picpicxrefxref
        automatically matched to d1k3wa3
        complexed with gol, ped, so4, zn; mutant
        1. region a:223-262 [148965] picpiclink
      5. 1q3b picpicxrefxref
        complexed with gol, mg, zn; mutant
        1. region a:217-262 [104520] picpiclink
      6. 1q3c picpicxrefxref
        complexed with gol, mg, zn; mutant
        1. region a:217-262 [104523] picpiclink
      7. 1q39 picpicxrefxref
        complexed with ca, zn
        1. region a:217-262 [104517] picpiclink
      8. 2oq4 picpicxrefxrefxrefxref
        automatically matched to d1k3wa3
        complexed with na, ped, so4, zn; mutant
        1. region a:224-262 [148980] picpiclink
      9. 2oq4 picpicxrefxrefxrefxref
        automatically matched to d1k3wa3
        complexed with na, ped, so4, zn; mutant
        1. region b:224-262 [148983] picpiclink
  3. Endonuclease VIII-like 1 (NEIL1) [111443]
    1. Human (Homo sapiens) [TaxId: 9606] [111444] (1)
      SQ Q96FI4 1-333
      1. 1tdh picpicxrefxref
        complexed with tmn
        1. region a:247-290 [106774] picpiclink
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk