Fold: Retrovirus zinc finger-like domains

metal(zinc)-bound fold

Lineage:

1. Root: scop
2. Class: Small proteins [56992]
   Usually dominated by metal ligand, heme, and/or disulfide bridges
3. Fold: Retrovirus zinc finger-like domains [57755]
   metal(zinc)-bound fold

Superfamilies:

1. Retrovirus zinc finger-like domains [57756] (1)
   uperfamily
   1. Retrovirus zinc finger-like domains [57757] (6)
      1. GAG protein p55 [57758]
         1. Synthetic, based on Human immunodeficiency virus [57759] (1)
            1. 2znf
               complexed with zn
               1. chain a [45159]
      2. HIV nucleocapsid [57760]
         duplication: two similar zinc-binding motifs
         1. Human immunodeficiency virus type 1, different isolates [TaxId: 11676] [57761] (12)
            SQ P03350 389-429
            1. 2exf
               automatically matched to d1bj6a_
               complexed with zn
               1. region a:12-53 [132525]
            2. 1esk
               complexed with zn
               1. chain a [45160]
            3. 1bj6
               protein/DNA complex; complexed with zn
               1. chain a [45163]
            4. 1ncp
               complexed with zn
               1. chain c [45168]
               2. chain n [45169]
            5. 1aaf
               complexed with zn
               1. chain a [45166]
            6. 1a1t
               protein/RNA complex; complexed with zn
               1. chain a [45165]
            7. 1mfs
               complexed with zn
               1. chain a [45167]
            8. 1hvn
               protein/DNA complex; complexed with zn
               1. chain e [45161]
            9. 1hvo
               protein/DNA complex; complexed with zn
               1. chain e [45162]
            10. 1f6u
                protein/RNA complex; complexed with ch3, nh2, zn
                1. chain a [45164]
            11. 1q3y
                complexed with zn; mutant
                1. chain a [104530]
            12. 1q3z
                complexed with zn; mutant
                1. chain a [104531]
         2. Human immunodeficiency virus type 2 [TaxId: 11709] [57762] (2)
            1. 1nc8
               complexed with zn
               1. chain a [45170]
            2. 2ec7
               automatically matched to d1nc8a_
               complexed with zn
               1. region a:1-29 [146784]
      3. Nucleocapsid protein from mason-pfizer monkey virus (MPMV) [57763]
         1. Mason-pfizer monkey virus [TaxId: 11855] [57764] (1)
            1. 1cl4
               complexed with zn; mutant
               1. chain a [45171]
      4. Zinc finger protein ncp10 [57765]
         1. Moloney murine leukemia virus, MoMLV [TaxId: 11801] [57766] (6)
            SQ P03332 479-534
            1. 1a6b
               contains a sequence of the psi-packaging domain of HIV-1
               protein/DNA complex; complexed with zn
               1. chain b [45172]
            2. 1wwd
               automatically matched to d1a6bb_
               complexed with zn
               1. region a:14-53 [121354]
            3. 1wwe
               automatically matched to d1a6bb_
               complexed with zn
               1. region a:14-53 [121355]
            4. 1wwf
               automatically matched to d1a6bb_
               complexed with zn
               1. region a:14-53 [121356]
            5. 1u6p
               complexed with ap7, zn
               1. chain a [113073]
            6. 1wwg
               automatically matched to d1a6bb_
               complexed with zn
               1. region a:14-53 [121357]
      5. Nucleic acid binding protein p14 [57767]
         1. Mouse mammary tumor virus [TaxId: 11757] [57768] (2)
            1. 1dsv
               1. chain a [45174]
            2. 1dsq
               1. chain a [45173]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk