Superfamily: Retrovirus zinc finger-like domains

uperfamily

Lineage:

1. Root: scop
2. Class: Small proteins [56992]
   Usually dominated by metal ligand, heme, and/or disulfide bridges
3. Fold: Retrovirus zinc finger-like domains [57755]
   metal(zinc)-bound fold
4. Superfamily: Retrovirus zinc finger-like domains [57756]
   uperfamily

Families:

1. Retrovirus zinc finger-like domains [57757] (6)
   1. GAG protein p55 [57758]
      1. Synthetic, based on Human immunodeficiency virus [57759] (1)
         1. 2znf
            complexed with zn
            1. chain a [45159]
   2. HIV nucleocapsid [57760]
      duplication: two similar zinc-binding motifs
      1. Human immunodeficiency virus type 1, different isolates [TaxId: 11676] [57761] (12)
         SQ P03350 389-429
         1. 2exf
            automatically matched to d1bj6a_
            complexed with zn
            1. region a:12-53 [132525]
         2. 1esk
            complexed with zn
            1. chain a [45160]
         3. 1bj6
            protein/DNA complex; complexed with zn
            1. chain a [45163]
         4. 1ncp
            complexed with zn
            1. chain c [45168]
            2. chain n [45169]
         5. 1aaf
            complexed with zn
            1. chain a [45166]
         6. 1a1t
            protein/RNA complex; complexed with zn
            1. chain a [45165]
         7. 1mfs
            complexed with zn
            1. chain a [45167]
         8. 1hvn
            protein/DNA complex; complexed with zn
            1. chain e [45161]
         9. 1hvo
            protein/DNA complex; complexed with zn
            1. chain e [45162]
         10. 1f6u
             protein/RNA complex; complexed with ch3, nh2, zn
             1. chain a [45164]
         11. 1q3y
             complexed with zn; mutant
             1. chain a [104530]
         12. 1q3z
             complexed with zn; mutant
             1. chain a [104531]
      2. Human immunodeficiency virus type 2 [TaxId: 11709] [57762] (2)
         1. 1nc8
            complexed with zn
            1. chain a [45170]
         2. 2ec7
            automatically matched to d1nc8a_
            complexed with zn
            1. region a:1-29 [146784]
   3. Nucleocapsid protein from mason-pfizer monkey virus (MPMV) [57763]
      1. Mason-pfizer monkey virus [TaxId: 11855] [57764] (1)
         1. 1cl4
            complexed with zn; mutant
            1. chain a [45171]
   4. Zinc finger protein ncp10 [57765]
      1. Moloney murine leukemia virus, MoMLV [TaxId: 11801] [57766] (6)
         SQ P03332 479-534
         1. 1a6b
            contains a sequence of the psi-packaging domain of HIV-1
            protein/DNA complex; complexed with zn
            1. chain b [45172]
         2. 1wwd
            automatically matched to d1a6bb_
            complexed with zn
            1. region a:14-53 [121354]
         3. 1wwe
            automatically matched to d1a6bb_
            complexed with zn
            1. region a:14-53 [121355]
         4. 1wwf
            automatically matched to d1a6bb_
            complexed with zn
            1. region a:14-53 [121356]
         5. 1u6p
            complexed with ap7, zn
            1. chain a [113073]
         6. 1wwg
            automatically matched to d1a6bb_
            complexed with zn
            1. region a:14-53 [121357]
   5. Nucleic acid binding protein p14 [57767]
      1. Mouse mammary tumor virus [TaxId: 11757] [57768] (2)
         1. 1dsv
            1. chain a [45174]
         2. 1dsq
            1. chain a [45173]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk