Structural Classification of Proteins
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Family: Retrovirus zinc finger-like domains

Lineage:

  1. Root: scop
  2. Class: Small proteins [56992]
    Usually dominated by metal ligand, heme, and/or disulfide bridges
  3. Fold: Retrovirus zinc finger-like domains [57755]
    metal(zinc)-bound fold
  4. Superfamily: Retrovirus zinc finger-like domains [57756]
    link to SUPERFAMILY database - Superfamily
  5. Family: Retrovirus zinc finger-like domains [57757]

Protein Domains:

  1. GAG protein p55 [57758]
    1. Synthetic, based on Human immunodeficiency virus [57759] (1)
      1. 2znf picpic
        complexed with zn
        1. chain a [45159] picpiclink
  2. HIV nucleocapsid [57760]
    duplication: two similar zinc-binding motifs
    1. Human immunodeficiency virus type 1, different isolates [TaxId: 11676] [57761] (12)
      SQ P03350 389-429
      1. 2exf picpic
        automatically matched to d1bj6a_
        complexed with zn
        1. region a:12-53 [132525] picpiclink
      2. 1esk picpic
        complexed with zn
        1. chain a [45160] picpiclink
      3. 1bj6 picpic
        protein/DNA complex; complexed with zn
        1. chain a [45163] picpiclink
      4. 1ncp picpic
        complexed with zn
        1. chain c [45168] picpiclink
        2. chain n [45169] picpiclink
      5. 1aaf picpic
        complexed with zn
        1. chain a [45166] picpiclink
      6. 1a1t picpic
        protein/RNA complex; complexed with zn
        1. chain a [45165] picpiclink
      7. 1mfs picpic
        complexed with zn
        1. chain a [45167] picpiclink
      8. 1hvn picpic
        protein/DNA complex; complexed with zn
        1. chain e [45161] picpiclink
      9. 1hvo picpic
        protein/DNA complex; complexed with zn
        1. chain e [45162] picpiclink
      10. 1f6u picpic
        protein/RNA complex; complexed with ch3, nh2, zn
        1. chain a [45164] picpiclink
      11. 1q3y picpic
        complexed with zn; mutant
        1. chain a [104530] picpiclink
      12. 1q3z picpic
        complexed with zn; mutant
        1. chain a [104531] picpiclink
    2. Human immunodeficiency virus type 2 [TaxId: 11709] [57762] (2)
      1. 1nc8 picpic
        complexed with zn
        1. chain a [45170] picpiclink
      2. 2ec7 picpic
        automatically matched to d1nc8a_
        complexed with zn
        1. region a:1-29 [146784] picpiclink
  3. Nucleocapsid protein from mason-pfizer monkey virus (MPMV) [57763]
    1. Mason-pfizer monkey virus [TaxId: 11855] [57764] (1)
      1. 1cl4 picpic
        complexed with zn; mutant
        1. chain a [45171] picpiclink
  4. Zinc finger protein ncp10 [57765]
    1. Moloney murine leukemia virus, MoMLV [TaxId: 11801] [57766] (6)
      SQ P03332 479-534
      1. 1a6b picpic
        contains a sequence of the psi-packaging domain of HIV-1
        protein/DNA complex; complexed with zn
        1. chain b [45172] picpiclink
      2. 1wwd picpic
        automatically matched to d1a6bb_
        complexed with zn
        1. region a:14-53 [121354] picpiclink
      3. 1wwe picpic
        automatically matched to d1a6bb_
        complexed with zn
        1. region a:14-53 [121355] picpiclink
      4. 1wwf picpic
        automatically matched to d1a6bb_
        complexed with zn
        1. region a:14-53 [121356] picpiclink
      5. 1u6p picpic
        complexed with ap7, zn
        1. chain a [113073] picpiclink
      6. 1wwg picpic
        automatically matched to d1a6bb_
        complexed with zn
        1. region a:14-53 [121357] picpiclink
  5. Nucleic acid binding protein p14 [57767]
    1. Mouse mammary tumor virus [TaxId: 11757] [57768] (2)
      1. 1dsv picpic
        1. chain a [45174] picpiclink
      2. 1dsq picpic
        1. chain a [45173] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk