Structural Classification of Proteins
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Family: Transcriptional factor domain

Lineage:

  1. Root: scop
  2. Class: Small proteins [56992]
    Usually dominated by metal ligand, heme, and/or disulfide bridges
  3. Fold: Rubredoxin-like [57769]
    metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2
  4. Superfamily: Zinc beta-ribbon [57783]
    link to SUPERFAMILY database - Superfamily
  5. Family: Transcriptional factor domain [57784]

Protein Domains:

  1. Transcriptional factor SII, C-terminal domain [57785]
    1. Human (Homo sapiens) [TaxId: 9606] [57786] (1)
      1. 1tfi picpic
        complexed with zn
        1. chain a [45204] picpiclink
  2. Transcription initiation factor TFIIB, N-terminal domain [57789]
    1. Archaeon Pyrococcus furiosus [TaxId: 2261] [57790] (1)
      1. 1pft picpic
        complexed with zn
        1. chain a [45206] picpiclink
    2. Human (Homo sapiens) [TaxId: 9606] [57791] (3)
      SQ Q00403 2-59
      1. 1dl6 picpic
        complexed with zn
        1. chain a [45207] picpiclink
      2. 1ro4 picpic
        1. chain a [105022] picpiclink
      3. 1rly picpic
        complexed with zn
        1. chain a [104988] picpiclink
  3. RBP9 subunit of RNA polymerase II [57787]
    contains two differently decorated domains of this fold
    1. Archaeon Thermococcus celer [TaxId: 2264] [57788] (1)
      1. 1qyp picpic
        C-terminal domain
        complexed with zn
        1. chain a [45205] picpiclink
    2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64575] (41)
      SQ P27999; part of multichain biological unit
      1. 1twf picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mn, utp, zn
        1. region i:1-49 [112733] picpiclink
        2. region i:50-121 [112734] picpiclink
      2. 1i50 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mn, zn
        1. region i:1-49 [61762] picpiclink
        2. region i:50-122 [61763] picpiclink
      3. 1k83 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with ilx, mn, trx, zn
        1. region i:1-49 [68283] picpiclink
        2. region i:50-122 [68284] picpiclink
      4. 1i3q picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, zn
        1. region i:1-49 [61615] picpiclink
        2. region i:50-122 [61616] picpiclink
      5. 2nvq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi1
        complexed with dut, mg, zn
        1. region i:2-49 [138642] picpiclink
      6. 2nvq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi2
        complexed with dut, mg, zn
        1. region i:50-120 [138643] picpiclink
      7. 1twc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with gtp, mn, zn
        1. region i:1-49 [112719] picpiclink
        2. region i:50-121 [112720] picpiclink
      8. 1twa picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with atp, mn, zn
        1. region i:1-49 [112704] picpiclink
        2. region i:50-121 [112705] picpiclink
      9. 1i6h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with mg, zn
        1. region i:2-49 [61839] picpiclink
        2. region i:50-120 [61840] picpiclink
      10. 1twh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with atp, mn, zn
        1. region i:1-49 [112759] picpiclink
        2. region i:50-121 [112760] picpiclink
      11. 1twg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with ctp, mn, zn
        1. region i:1-49 [112746] picpiclink
        2. region i:50-121 [112747] picpiclink
      12. 2nvy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi1
        complexed with mn, zn
        1. region i:2-49 [138688] picpiclink
      13. 2nvy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi2
        complexed with mn, zn
        1. region i:50-120 [138689] picpiclink
      14. 2e2i picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi1
        complexed with dgt, mg, zn
        1. region i:2-49 [132002] picpiclink
      15. 2e2i picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi2
        complexed with dgt, mg, zn
        1. region i:50-120 [132003] picpiclink
      16. 2e2j picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi1
        complexed with g2p, mg, zn
        1. region i:2-49 [132015] picpiclink
      17. 2e2j picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi2
        complexed with g2p, mg, zn
        1. region i:50-120 [132016] picpiclink
      18. 2b63 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi1
        complexed with 5bu, mg, zn
        1. region i:2-49 [127927] picpiclink
      19. 2b63 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi2
        complexed with 5bu, mg, zn
        1. region i:50-120 [127928] picpiclink
      20. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi1
        complexed with bru, mg, tt, zn
        1. region i:2-49 [138201] picpiclink
      21. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi2
        complexed with bru, mg, tt, zn
        1. region i:50-117 [138202] picpiclink
      22. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi1
        complexed with bru, mg, tt, zn
        1. region u:2-49 [138217] picpiclink
      23. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi2
        complexed with bru, mg, tt, zn
        1. region u:50-117 [138218] picpiclink
      24. 2nvx picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi1
        complexed with dut, mg, zn
        1. region i:2-49 [138675] picpiclink
      25. 2nvx picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi2
        complexed with dut, mg, zn
        1. region i:50-120 [138676] picpiclink
      26. 2nvt picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi1
        complexed with g2p, mg, zn
        1. region i:2-49 [138655] picpiclink
      27. 2nvt picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi2
        complexed with g2p, mg, zn
        1. region i:50-120 [138656] picpiclink
      28. 2ja5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi1
        complexed with bru, mg, zn
        1. region i:2-49 [138169] picpiclink
      29. 2ja5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi2
        complexed with bru, mg, zn
        1. region i:50-117 [138170] picpiclink
      30. 2ja8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi1
        complexed with bru, mg, tt, zn
        1. region i:2-49 [138233] picpiclink
      31. 2ja8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi2
        complexed with bru, mg, tt, zn
        1. region i:50-117 [138234] picpiclink
      32. 2b8k picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi1
        complexed with zn
        1. region i:2-49 [128087] picpiclink
      33. 2b8k picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi2
        complexed with zn
        1. region i:50-120 [128088] picpiclink
      34. 2ja6 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi1
        complexed with bru, mg, tt, zn
        1. region i:2-49 [138185] picpiclink
      35. 2ja6 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi2
        complexed with bru, mg, tt, zn
        1. region i:50-117 [138186] picpiclink
      36. 2yu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi1
        complexed with mg, utp, zn
        1. region i:2-49 [140072] picpiclink
      37. 2yu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi2
        complexed with mg, utp, zn
        1. region i:50-120 [140073] picpiclink
      38. 2e2h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi1
        complexed with gtp, mg, zn
        1. region i:2-49 [131989] picpiclink
      39. 2e2h picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi2
        complexed with gtp, mg, zn
        1. region i:50-120 [131990] picpiclink
      40. 2nvz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi1
        complexed with mg, utp, zn
        1. region i:2-49 [138701] picpiclink
      41. 2nvz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to d1i3qi2
        complexed with mg, utp, zn
        1. region i:50-120 [138702] picpiclink
  4. Transcription initiation factor TFIIE-alpha [118283]
    1. Human (Homo sapiens) [TaxId: 9606] [118284] (1)
      SQ P29083 113-174
      1. 1vd4 picpic
        complexed with zn
        1. chain a [113613] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk