Structural Classification of Proteins
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Family: Rubredoxin

Lineage:

  1. Root: scop
  2. Class: Small proteins [56992]
    Usually dominated by metal ligand, heme, and/or disulfide bridges
  3. Fold: Rubredoxin-like [57769]
    metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2
  4. Superfamily: Rubredoxin-like [57802]
    link to SUPERFAMILY database - Superfamily
  5. Family: Rubredoxin [57803]

Protein Domains:

  1. Rubredoxin [57804]
    1. Desulfovibrio vulgaris [TaxId: 881] [57805] (7)
      1. 1rb9 picpic
        complexed with fe2, for, so4
        1. chain a [45214] picpiclink
      2. 8rxn picpic
        complexed with fe, so4
        1. chain a [45215] picpiclink
      3. 7rxn picpic
        complexed with fe, so4
        1. chain a [45216] picpiclink
      4. 2rdv picpic
        complexed with fe
        1. chain a [45217] picpiclink
        2. chain b [45218] picpiclink
        3. chain c [45219] picpiclink
      5. 1rdv picpic
        complexed with fe
        1. chain a [45220] picpiclink
      6. 2ql0 picpic
        automatically matched to d1rb9a_
        complexed with zn
        1. region a:1-52 [150858] picpiclink
      7. 2qkz picpic
        automatically matched to d1rb9a_
        complexed with ni
        1. region a:1-52 [150857] picpiclink
    2. Desulfovibrio gigas [TaxId: 879] [57806] (3)
      1. 2dsx picpic
        automatically matched to d1e8ja_
        complexed with fe
        1. region a:1-52 [131699] picpiclink
      2. 1rdg picpic
        complexed with fe
        1. chain a [45221] picpiclink
      3. 1e8j picpic
        1. chain a [64796] picpiclink
    3. Desulfovibrio desulfuricans, strain 27774 [TaxId: 876] [57807] (1)
      1. 6rxn picpic
        complexed with fe
        1. chain a [45222] picpiclink
    4. Clostridium pasteurianum [TaxId: 1501] [57808] (23)
      SQ P00268
      1. 1iro picpic
        complexed with fe
        1. chain a [45223] picpiclink
      2. 1irn picpic
        complexed with zn
        1. chain a [45224] picpiclink
      3. 4rxn picpic
        complexed with fe
        1. chain a [45226] picpiclink
      4. 1smm picpic
        complexed with fe, so4; mutant
        1. chain a [98923] picpiclink
      5. 5rxn picpic
        complexed with fe
        1. chain a [45225] picpiclink
      6. 1r0i picpic
        cadmium-substituted
        complexed with cd
        1. chain a [96728] picpiclink
      7. 1smw picpic
        complexed with fe2; mutant
        1. chain a [98925] picpiclink
      8. 1b13 picpic
        complexed with fe; mutant
        1. chain a [45227] picpiclink
      9. 1c09 picpic
        complexed with fe; mutant
        1. chain a [45228] picpiclink
        2. chain b [45229] picpiclink
        3. chain c [45230] picpiclink
      10. 1r0f picpic
        gallium-substituted
        complexed with ga
        1. chain a [96725] picpiclink
      11. 1r0g picpic
        mercury-substituted
        complexed with hg
        1. chain a [96726] picpiclink
      12. 1smu picpic
        complexed with fe2; mutant
        1. chain a [98924] picpiclink
      13. 1t9p picpic
        complexed with fe; mutant
        1. chain a [112369] picpiclink
        2. chain b [112370] picpiclink
        3. chain c [112371] picpiclink
      14. 1fhh picpic
        complexed with fe
        1. chain a [59836] picpiclink
      15. 1r0h picpic
        cobalt-substituted
        complexed with co
        1. chain a [96727] picpiclink
      16. 1b2j picpic
        complexed with fe; mutant
        1. chain a [45231] picpiclink
      17. 1fhm picpic
        complexed with fe2
        1. chain a [59841] picpiclink
      18. 1be7 picpic
        complexed with fe; mutant
        1. chain a [45232] picpiclink
      19. 1b2o picpic
        complexed with fe; mutant
        1. chain a [45233] picpiclink
        2. chain b [45234] picpiclink
      20. 1t9o picpic
        complexed with fe; mutant
        1. chain a [112366] picpiclink
        2. chain b [112367] picpiclink
        3. chain c [112368] picpiclink
      21. 1t9q picpic
        complexed with fe; mutant
        1. chain a [112372] picpiclink
      22. 1r0j picpic
        nickel-substituted
        complexed with ni
        1. chain a [96729] picpiclink
      23. 1bfy picpic
        complexed with fe
        1. chain a [45235] picpiclink
    5. Archaeon Pyrococcus furiosus [TaxId: 2261] [57809] (11)
      SQ P24297
      1. 1brf picpic
        complexed with fe
        1. chain a [45236] picpiclink
      2. 1bq8 picpic
        complexed with fe; mutant
        1. chain a [45237] picpiclink
      3. 1bq9 picpic
        complexed with fe; mutant
        1. chain a [45238] picpiclink
      4. 1iu5 picpic
        complexed with fe; mutant
        1. chain a [71434] picpiclink
      5. 1vcx picpic
        complexed with fe
        1. chain a [108516] picpiclink
      6. 1iu6 picpic
        complexed with fe; mutant
        1. chain a [71435] picpiclink
      7. 1caa picpic
        complexed with fe
        1. chain a [45239] picpiclink
      8. 1cad picpic
        complexed with fe
        1. chain a [45240] picpiclink
      9. 1zrp picpic
        zn-substituted
        complexed with zn
        1. chain a [45242] picpiclink
      10. 1qcv picpic
        variant pfrd-xc4 folds without iron
        1. chain a [45241] picpiclink
      11. 1rwd picpic
        mutant
        1. chain a [97977] picpiclink
    6. Guillardia theta [TaxId: 55529] [57810] (2)
      1. 1h7v picpic
        complexed with zn
        1. chain a [65713] picpiclink
      2. 1dx8 picpic
        complexed with zn
        1. chain a [45243] picpiclink
  2. Two-iron rubredoxin [103620]
    1. Pseudomonas oleovorans [TaxId: 301] [103621] (1)
      1. 1s24 picpic
        second domain
        complexed with cd
        1. chain a [98366] picpiclink
  3. Rubrerythrin, C-terminal domain [57811]
    1. Desulfovibrio vulgaris [TaxId: 881] [57812] (10)
      SQ P24931
      1. 1lko picpicxref
        complexed with fe2
        1. region a:148-191 [78064] picpiclink
      2. 1lkp picpicxref
        complexed with azi, fe2
        1. region a:148-191 [78066] picpiclink
      3. 1lkm picpicxref
        complexed with fe
        1. region a:148-191 [78062] picpiclink
      4. 1s2z picpicxref
        complexed with fe, zn
        1. region a:148-191 [105231] picpiclink
      5. 1qyb picpicxref
        complexed with fe, so4, zn
        1. region a:148-191 [96580] picpiclink
      6. 1s30 picpicxref
        complexed with fe, zn
        1. region a:148-191 [105233] picpiclink
      7. 1ryt picpicxref
        complexed with fe
        1. region a:148-191 [45245] picpiclink
      8. 1jyb picpicxref
        complexed with fe, zn
        1. region a:148-191 [77207] picpiclink
      9. 1dvb picpicxref
        complexed with fe, zn
        1. region a:148-191 [45244] picpiclink
      10. 1b71 picpicxref
        1. region a:148-191 [45246] picpiclink
    2. Archaeon Pyrococcus furiosus [TaxId: 2261] [103622] (3)
      1. 1nnq picpicxref
        structural genomics
        complexed with zn
        1. region a:135-171 [92007] picpiclink
        2. region b:135-171 [92009] picpiclink
      2. 2hr5 picpicxrefxref
        automatically matched to d1nnqa2
        complexed with fe
        1. region a:135-171 [136683] picpiclink
      3. 2hr5 picpicxrefxref
        automatically matched to d1nnqa2
        complexed with fe
        1. region b:135-171 [136685] picpiclink
  4. Nigerythrin, C-terminal domain [144194]
    1. Desulfovibrio vulgaris [TaxId: 881] [144195] (6)
      SQ P30820 167-202
      1. 1yuz picpicxrefxref
        complexed with fe, fe2
        1. region a:167-202 [124078] picpiclink
      2. 1yuz picpicxrefxref
        automatically matched to 1YUZ A:167-202
        complexed with fe, fe2
        1. region b:167-202 [124080] picpiclink
      3. 1yv1 picpicxrefxref
        automatically matched to 1YUX A:167-202
        complexed with fe2; mutant
        1. region a:167-202 [124085] picpiclink
      4. 1yv1 picpicxrefxref
        automatically matched to 1YUX A:167-202
        complexed with fe2; mutant
        1. region b:167-202 [124087] picpiclink
      5. 1yux picpicxrefxref
        complexed with fe, fe2; mutant
        1. region a:167-202 [124074] picpiclink
      6. 1yux picpicxrefxref
        automatically matched to 1YUX A:167-202
        complexed with fe, fe2; mutant
        1. region b:167-202 [124076] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk