Structural Classification of Proteins

Superfamily: FYVE/PHD zinc finger

: uperfamily

Lineage:

Root: scop
Class: Small proteins [56992]
Usually dominated by metal ligand, heme, and/or disulfide bridges
Fold: FYVE/PHD zinc finger [57902]
dimetal(zinc)-bound alpha+beta fold
Superfamily: FYVE/PHD zinc finger [57903]
uperfamily

Families:

FYVE, a phosphatidylinositol-3-phosphate binding domain [57904] (6)
1. vps27p protein [57905]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [57906] (1)
    1. 1vfy
      complexed with zn; mutant
      1. chain a [45357]
2. Eea1 [64583]
  1. Human (Homo sapiens) [TaxId: 9606] [64584] (3)
    1. 1joc
      complexed with itp, zn
      1. region a:1348-1411 [66990]
      2. region b:1348-1411 [66992]
    2. 1hyi
      complexed with inositol 1,3-bisphosphate
      complexed with itp, zn
      1. chain a [61406]
    3. 1hyj
      complexed with zn
      1. chain a [61407]
3. Hrs [57907]
  protein involved in membrane trafficking and signal transduction
  1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [57908] (1)
    1. 1dvp
      complexed with cit, zn
      1. region a:149-220 [45358]
4. Effector domain of rabphilin-3a [57909]
  contains additional N-terminal long alpha-helix
  1. Rat (Rattus norvegicus) [TaxId: 10116] [57910] (1)
    1. 1zbd
      complexed with gtp, mg, zn; mutant
      1. chain b [45359]
5. Zinc finger FYVE domain containing protein 19 [118324]
  1. Mouse (Mus musculus) [TaxId: 10090] [118325] (1)
    SQ Q9DAZ9 1-75
    1. 1wfk
      Structural genomics target
      complexed with zn
      1. chain a [114585]
6. Rififylin (FYVE-RING finger protein Sakura) [118326]
  1. Human (Homo sapiens) [TaxId: 9606] [118327] (1)
    SQ Q8WZ73 45-139
    1. 1y02
      complexed with zn
      1. region a:20-70 [116279]
PHD domain [57911] (14)
1. Williams-Beuren syndrome transcription factor, WSTF [57912]
  1. Human (Homo sapiens) [TaxId: 9606] [57913] (1)
    1. 1f62
      complexed with zn
      1. chain a [45360]
2. Nuclear corepressor KAP-1 (TIF-1beta) [57914]
  1. Human (Homo sapiens) [TaxId: 9606] [57915] (1)
    1. 1fp0
      complexed with zn
      1. region a:19-88 [45361]
3. Mi2-beta (CHD4) [90226]
  chromodomain-helicase-DNA-binding protein 4
  1. Human (Homo sapiens) [TaxId: 9606] [90227] (2)
    1. 1mm3
      second PHD domain with the C-terminal loop replaced by the corresponding loop from WSTF
      complexed with zn
      1. chain a [85016]
    2. 1mm2
      second PHD domain
      complexed with zn
      1. chain a [85015]
4. PHD finger protein At5g26210 [118328]
  1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [118329] (1)
    SQ O81488 201-251
    1. 1we9
      Structural genomics target
      complexed with zn
      1. chain a [114549]
5. PHD finger protein At1g33420 [118330]
  1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [118331] (1)
    SQ Q9C810 595-653
    1. 1wee
      Structural genomics target
      complexed with zn
      1. chain a [114550]
6. Death associated transcription factor 1, Datf1 (DIO-1) [118332]
  1. Mouse (Mus musculus) [TaxId: 10090] [118333] (1)
    SQ Q8C9B9 257-319
    1. 1wem
      Structural genomics target
      complexed with zn
      1. chain a [114559]
7. Inhibitor of growth protein 4, Ing4 [118334]
  1. Mouse (Mus musculus) [TaxId: 10090] [118335] (2)
    SQ Q8C0D7 188-245
    1. 1wen
      Structural genomics target
      complexed with zn
      1. chain a [114560]
    2. 1weu
      Structural genomics target; the extra N-terminal region (168-187) is unstructured
      complexed with zn
      1. chain a [114565]
  2. Homo sapiens [TaxId: 9606] [161223] (5)
    1. 2pnx
      automatically matched to d1wena_
      complexed with m3l, zn
      1. region a:195-245 [149708]
    2. 2vnf
      automatically matched to d1wena_
      complexed with dtt, dtu, m3l, na, zn
      1. region a:195-244 [153333]
    3. 2vnf
      automatically matched to d1wena_
      complexed with dtt, dtu, m3l, na, zn
      1. region c:191-244 [153334]
    4. 2pnx
      automatically matched to d1wena_
      complexed with m3l, zn
      1. region c:195-244 [149709]
    5. 2k1j
      automatically matched to d1wena_
      complexed with zn
      1. region a:188-245 [148257]
8. PHD finger protein 8 [118336]
  1. Mouse (Mus musculus) [TaxId: 10090] [118337] (1)
    SQ Q80TJ7 1-66
    1. 1wep
      Structural genomics target
      complexed with zn
      1. chain a [114562]
9. PHD finger protein 7 (NYD-SP6) [118338]
  1. Mouse (Mus musculus) [TaxId: 10090] [118339] (1)
    SQ Q9DAG9 232-304
    1. 1weq
      Structural genomics target
      complexed with zn
      1. chain a [114563]
10. PHD Inhibitor of growth protein 2, Ing2 [118340]
  1. Mouse (Mus musculus) [TaxId: 10090] [118341] (1)
    SQ Q9ESK4 205-262
    1. 1wes
      Structural genomics target
      complexed with zn
      1. chain a [114564]
11. PHD finger protein 22 [118342]
  1. Mouse (Mus musculus) [TaxId: 10090] [118343] (1)
    SQ Q9D168 150-224
    1. 1wev
      Structural genomics target
      complexed with zn
      1. chain a [114566]
12. Sumoylation ligase E3, SIZ1 [118344]
  1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [118345] (1)
    SQ Q680Q4 104-168
    1. 1wew
      Structural genomics target
      complexed with zn
      1. chain a [114567]
13. V(D)J recombination-activating protein 2, Rag2 [161224]
  1. Mouse (Mus musculus) [TaxId: 10090] [161225] (14)
    SQ P21784 414-487
    1. 2v89
      automatically matched to 2JWO A:414-487
      complexed with m3l, zn
      1. region a:1414-1487 [152778]
    2. 2v89
      automatically matched to 2JWO A:414-487
      complexed with m3l, zn
      1. region b:414-487 [152779]
    3. 2v86
      automatically matched to 2JWO A:414-487
      complexed with da2, m3l, zn
      1. region a:414-487 [152772]
    4. 2v86
      automatically matched to 2JWO A:414-487
      complexed with da2, m3l, zn
      1. region b:414-487 [152773]
    5. 2v87
      automatically matched to 2JWO A:414-487
      complexed with 2mr, m3l, zn
      1. region a:414-487 [152774]
    6. 2v87
      automatically matched to 2JWO A:414-487
      complexed with 2mr, m3l, zn
      1. region b:414-487 [152775]
    7. 2v85
      automatically matched to 2JWO A:414-487
      complexed with m3l, nmm, zn
      1. region a:414-487 [152770]
    8. 2v85
      automatically matched to 2JWO A:414-487
      complexed with m3l, nmm, zn
      1. region b:414-487 [152771]
    9. 2v88
      automatically matched to 2JWO A:414-487
      complexed with 2mr, mly, zn
      1. region a:414-487 [152776]
    10. 2v88
      automatically matched to 2JWO A:414-487
      complexed with 2mr, mly, zn
      1. region b:414-487 [152777]
    11. 2v83
      automatically matched to 2JWO A:414-487
      complexed with m3l, zn
      1. region a:414-485 [152767]
    12. 2v83
      automatically matched to 2JWO A:414-487
      complexed with m3l, zn
      1. region b:414-487 [152768]
    13. 2v83
      automatically matched to 2JWO A:414-487
      complexed with m3l, zn
      1. region c:414-483 [152769]
    14. 2jwo
      complexed with zn
      1. region a:414-487 [148229]
variant PHD-like domain [118346] (1)
1. Hypothetical protein KIAA1045 [118347]
  1. Human (Homo sapiens) [TaxId: 9606] [118348] (1)
    SQ Q9UPV7 123-198
    1. 1wil
      Structural genomics target
      complexed with zn
      1. chain a [114676]