Class: Coiled coil proteins

Not a true class

Lineage:

1. Root: scop
2. Class: Coiled coil proteins [57942]
   Not a true class

Folds:

1. Parallel coiled-coil [57943] (34)
   this is not a true fold; includes oligomers of shorter identical helices
   1. Triple coiled coil domain of C-type lectins [57944] (1)
      uperfamily
   2. Trimerization domain of TRAF [57953] (1)
      uperfamily
   3. Leucine zipper domain [57959] (1)
      uperfamily
   4. Inovirus (filamentous phage) major coat protein [57987] (1)
      uperfamily
   5. Tropomyosin [57997] (1)
      uperfamily
   6. Chicken cartilage matrix protein [58002] (1)
      uperfamily
   7. Assembly domain of cartilage oligomeric matrix protein [58006] (1)
      uperfamily
   8. Fibrinogen coiled-coil and central regions [58010] (1)
      uperfamily
   9. Coiled-coil domain of nucleotide exchange factor GrpE [58014] (1)
      uperfamily
   10. Coiled-coil dimerization domain from cortexillin I [58018] (1)
       uperfamily
   11. XRCC4, C-terminal oligomerization domain [58022] (1)
       uperfamily
   12. Intermediate filament protein, coiled coil region [64593] (1)
       uperfamily
   13. Delta-sleep-inducing peptide immunoreactive peptide [58026] (1)
       uperfamily
   14. Rotavirus nonstructural proteins [58030] (2)
       not a true superfamily
       uperfamily
   15. Multimerization domain of the phosphoprotein from sendai virus [58034] (1)
       uperfamily
   16. SNARE fusion complex [58038] (1)
       tetrameric parallel coiled coil
       uperfamily
   17. Outer membrane lipoprotein [58042] (1)
       uperfamily
   18. Fibritin [58046] (1)
       uperfamily
   19. N-terminal coiled coil domain from apc [58050] (1)
       uperfamily
   20. Tetrabrachion [58054] (1)
       uperfamily
   21. Eea1 homodimerisation domain [69979] (1)
       uperfamily
   22. Mitotic arrest deficient-like 1, Mad1 [75704] (1)
       uperfamily
   23. Dimerization motif of sir4 [90242] (1)
       uperfamily
   24. Head morphogenesis protein gp7 [90246] (1)
       uperfamily
   25. Troponin coil-coiled subunits [90250] (2)
       form heterodimeric coiled coil
       uperfamily
   26. Myosin rod fragments [90257] (1)
       uperfamily
   27. G protein-binding domain [103652] (2)
       uperfamily
   28. Geminin coiled-coil domain [111469] (1)
       uperfamily
   29. Vasodilator-stimulated phosphoprotein, VASP, tetramerisation domain [118370] (1)
       tetrameric parallel coiled coil with a right-handed twist
       uperfamily
   30. MPN010-like [144266] (1)
       segmented trimeric coiled coil
       uperfamily
   31. Eferin C-derminal domain-like [144270] (1)
       uperfamily
   32. Heterotrimerisation domain of extracellular hemoglobin linker subunits [144276] (1)
       uperfamily
   33. Sec2 N-terminal region [144284] (1)
       dimeric coiled coil
       uperfamily
   34. RILP dimerisation region [161256] (1)
2. Tetramerization domain of the Mnt repressor [58058] (1)
   1. Tetramerization domain of the Mnt repressor [58059] (1)
      tetrameric antiparallel bundle with a right-handed twist
      uperfamily
3. Stalk segment of viral fusion proteins [58063] (3)
   core: trimeric coiled coil
   1. Influenza hemagglutinin (stalk) [58064] (1)
      uperfamily
   2. Virus ectodomain [58069] (1)
      uperfamily
   3. Coronavirus S2 glycoprotein [111474] (1)
      uperfamily
4. Antiparallel coiled-coil [58086] (17)
   this is not a true fold; contains at least two very long antiparallel helices
   1. Variant surface glycoprotein (N-terminal domain) [58087] (1)
      uperfamily
   2. Clostridium neurotoxins, "coiled-coil" domain [58091] (1)
      uperfamily
   3. Colicin Ia, N-terminal domain [58096] (1)
      uperfamily
   4. Colicin E3 receptor domain [69985] (1)
      uperfamily
   5. Bacterial hemolysins [58100] (2)
      uperfamily
   6. Methyl-accepting chemotaxis protein (MCP) signaling domain [58104] (1)
      uperfamily
   7. Oligomerization domain of hepatitis delta antigen [58108] (1)
      uperfamily
   8. F1 ATPase inhibitor, IF1, C-terminal domain [64602] (1)
      uperfamily
   9. Chemotaxis phosphatase CheZ [75708] (1)
      dimerizes with the formation of a 4-helical bundle
      uperfamily
   10. Rad50 coiled-coil Zn hook [75712] (1)
       dimerizes via a CxxC motif in the loop, zinc-hook
       uperfamily
   11. C-terminal domain of PLC-beta [69989] (1)
       left-handed antiparallel coiled-coil; dimerizes with the formation of a 4-helical bundle
       uperfamily
   12. Tumor suppressor gene product Apc [82931] (1)
       uperfamily
   13. Proline/betaine transporter ProP, C-terminal cytoplasmic domain [103661] (1)
       uperfamily
   14. Fzo-like conserved region [111479] (1)
       antiparallel coiled-coil in the crystals
       uperfamily
   15. occludin/ELL-like [144292] (1)
       antiparallel hairpin with a kinked second helix; similar to the N-terminal structure of the thermostable carboxypeptidase 1 (scop_pr 82731)
       uperfamily
   16. Gam-like [161266] (1)
       homodimeric fold with a ring-like structure formed by kinked coiled-coil and a beta-ribboon, interrupted by small helical insertions
   17. PspA lactotransferrin-binding region [161270] (1)
       3 helices, the middle one is longer than the two others
5. Apolipoprotein A-I [58112] (1)
   tetrameric antiparallel coiled coil, closed in a circuit
   1. Apolipoprotein A-I [58113] (1)
      uperfamily
6. Apolipoprotein A-II [82935] (1)
   segmented tetrameric parallel coiled coil
   1. Apolipoprotein A-II [82936] (1)
      uperfamily
7. Synuclein [118374] (1)
   1. Synuclein [118375] (1)
      uperfamily

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk