Structural Classification of Proteins
Family: Virus ectodomain
Lineage:
Root:
scop
Class:
Coiled coil proteins
[57942]
Not a true class
Fold:
Stalk segment of viral fusion proteins
[58063]
core: trimeric coiled coil
Superfamily:
Virus ectodomain
[58069]
uperfamily
Family:
Virus ectodomain
[58070]
Protein Domains:
Retrovius gp41 protease-resistant core [58071]
coiled coil; biological unit: trimer
Human immunodeficiency virus type 1
[TaxId: 11676]
[58072] (22)
1df4
chain a
[45719]
2q5u
region a:1-45
[139884]
region b:1-45
[139885]
region c:1-45
[139886]
1czq
fusion protein between gp41 and GCN4 fragments; complex with a d-peptide inhibitor of HIV-1 entry
chain a
[45720]
2q3i
automatically matched to d1czqa_
region a:1-45
[139794]
1k33
chain a
[68092]
1i5x
chain a
[76736]
1k34
chain a
[68093]
1qr9
chain a
[45721]
2ot5
automatically matched to d1df5a_
region a:1-67
[149008]
1dlb
chain a
[45722]
1i5y
chain a
[76737]
1gzl
fusion protein between gp41 and GCN4 fragments; complex with a cell entry inhibitor
chain a,c
[76422]
chain b,d
[76423]
3cp1
automatically matched to d1df5a_
region a:11-78
[156885]
2q7c
region a:1-45
[139887]
region b:1-45
[139888]
region c:1-45
[139889]
1aik
chain n,c
[45723]
3cyo
automatically matched to d1df5a_
region a:11-78
[157147]
1f23
chain a
[59602]
chain b
[59603]
chain c
[59604]
chain d
[59605]
chain e
[59606]
chain f
[59607]
1qr8
chain a
[45724]
1env
chain a
[45726]
1szt
chain a
[45725]
1fav
fusion protein between gp41 and GCN4 fragments; complex with a cell entry inhibitor
chain a,c
[45728]
1df5
chain a
[45727]
Simian immunodeficiency virus
[TaxId: 11723]
[58073] (10)
1qbz
ectodomain
chain a
[45729]
chain b
[45730]
chain c
[45731]
1jq0
chain a
[71786]
2siv
chain a,b
[45732]
chain c,d
[45733]
chain e,f
[45734]
1jpx
chain a
[71783]
chain d
[71784]
chain g
[71785]
2ezr
ectodomain
chain a
[45741]
chain b
[45742]
chain c
[45743]
2ezq
ectodomain
chain a
[45738]
chain b
[45739]
chain c
[45740]
2ezs
ectodomain
chain a
[45744]
chain b
[45745]
chain c
[45746]
2ezp
ectodomain
chain a
[45735]
chain b
[45736]
chain c
[45737]
1qce
ectodomain
chain a
[45750]
chain b
[45751]
chain c
[45752]
2ezo
ectodomain
chain a
[45747]
chain b
[45748]
chain c
[45749]
Visna virus
[TaxId: 11741]
[64597] (1)
1jek
chain a,b
[62920]
synthetic construct
[161260] (1)
2r3c
automatically matched to d1czqa_
region a:1-45
[151556]
HTLV-1 gp21 [58074]
Human T-cell leukemia virus type 1
[TaxId: 11908]
[58075] (1)
1mg1
chimera with MBP
complexed with cl, mal
region a:371-455
[45753]
Core structure of Ebo gp2 [58076]
Ebola virus
[TaxId: 205488]
[58077] (2)
2ebo
chain a
[45754]
chain b
[45755]
chain c
[45756]
1ebo
chimeric, contains a fragment of gcn4 zipper at the N-terminus (res. 1-29)
chain a
[45757]
chain b
[45758]
chain c
[45759]
chain d
[45760]
chain e
[45761]
chain f
[45762]
MoMLV p15 core fragment [58627]
Moloney murine leukemia virus, MoMLV
[TaxId: 11801]
[58628] (1)
1mof
chain a
[46324]
Paramyxovirus sv5 fusion protein core [58078]
trimer of heterodimers
Simian virus 5, strain w3
[TaxId: 11207]
[58079] (1)
1svf
chain a
[45763]
chain b
[45764]
chain c
[45765]
chain d
[45766]
Stalk of the ectodomain of NDV fusion glycoprotein [69983]
Newcastle disease virus
[TaxId: 11176]
[69984] (1)
1g5g
complexed with man, nag
region a:67-223
[65156]
region b:67-223
[65158]
region c:67-223
[65160]
region d:67-223
[65162]
region e:67-223
[65164]
region f:67-223
[65166]
HRSV fusion protein core [58080]
Human respiratory syncytial virus
[TaxId: 11250]
[58081] (1)
1g2c
chain a,b
[45767]
chain c,d
[45768]
chain e,f
[45769]
chain g,h
[45770]
chain i,j
[45771]
chain k,l
[45772]
chain m,n
[45773]
chain o,p
[45774]
chain q,r
[45775]
chain s,t
[45776]
chain u,v
[45777]
chain w,x
[45778]
HERV-FRD_6p24.1 provirus ancestral Env polyprotein [144288]
Human (Homo sapiens)
[TaxId: 9606]
[144289] (3)
SQ
P60508
391-443
1y4m
region a:46-98
[122626]
1y4m
automatically matched to 1Y4M A:46-98
region b:46-98
[122627]
1y4m
automatically matched to 1Y4M A:46-98
region c:46-98
[122628]
Fusion glycoprotein f0 [161261]
Mumps virus
[TaxId: 11161]
[161262] (1)
SQ
P11236
123-179,448-479
2fyz
region a:123-179,b:448-479
[147054]
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Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
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© 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk